DY263049

Overview
NameDY263049
Unique NameDY263049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2388 contig Ccv1_Contig2388:1..1218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY263049 vs. ExPASy Swiss-Prot
Match: CRY1_SINAL (Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.435e-53
Identity = 106/180 (58.89%), Postives = 136/180 (75.56%), Query Frame = 2
Query:  596 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIQENLVKLGISVQS-NMKICYMNFGKYMMRKEMVF--------KIFDAYLGKVVCQSKWKPAFNSSSQGVW 1108
            +TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L QSLK+LG+EL L KT ST++A+L+C+ A  ATKVVFNHLYDPVSLVRDH+++E LV+ GISVQS N  +C M+ G+Y +++  +         K  D  +  VV    W+    S+++ VW
Sbjct:    6 KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLVERGISVQSYNGDLC-MSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLMPLSAAETVW 184          
BLAST of DY263049 vs. ExPASy Swiss-Prot
Match: CRY2_ARATH (Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 6.667e-51
Identity = 102/171 (59.65%), Postives = 127/171 (74.27%), Query Frame = 2
Query:  596 RTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIQENLVKLGISVQS-NMKICYMNFGKYMMRKEMVFKIFDAYLGKVVCQSKWKPAFNSSSQGV 1105
            +TIVWFRRDLRIEDNPALAAAA +GSVFPV+ WCP+EEGQFYPGR SRWW+KQSL++L QSLK+LG++L L KT +T++A+L+CI    ATKVVFNHLYDPVSLVRDH+++E LV+ GISVQS N  + Y  +  Y   K   F  F++Y         WK   + S + V
Sbjct:    6 KTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISVQSYNGDLLYEPWEIY-CEKGKPFTSFNSY---------WKKCLDMSIESV 166          
BLAST of DY263049 vs. ExPASy Swiss-Prot
Match: CRY1_ARATH (Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.916e-36
Identity = 71/135 (52.59%), Postives = 98/135 (72.59%), Query Frame = 2
Query:  560 LRGSESVNMGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYTWCPKEEGQFYPGRVSRWWLKQSLSYLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIQENLVKLGISVQS 964
            + GS S    G  +IVWFRRDLR+EDNPALAAA R G V  ++ W P+EEG ++PGRVSRWWLK SL+ L  SL+SLG  L+  ++  ++A+LL+ + +  A+++ FNHLYDP+SLVRDH  ++ L   GI+V+S
Sbjct:    1 MSGSVSGCGSGGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRS 135          

HSP 2 Score: 25.0238 bits (53), Expect = 1.916e-36
Identity = 14/46 (30.43%), Postives = 21/46 (45.65%), Query Frame = 1
Query:  973 NLLYELWEIYDEKRNGF*NF*CLFGKSCLPKQMETRFQFFLPGRLV 1110
            +LLYE WE+ DE    F  F   F + CL    +       P +++
Sbjct:  139 DLLYEPWEVTDELGRPFSMF-AAFWERCLSMPYDPESPLLPPKKII 183          
The following BLAST results are available for this feature:
BLAST of DY263049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CRY1_SINAL1.435e-5358.89Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1[more]
CRY2_ARATH6.667e-5159.65Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=... [more]
CRY1_ARATH1.916e-3652.59Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CG01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263049 ID=DY263049; Name=DY263049; organism=Citrus clementina; type=EST; length=1218bp
ATTCACATGAAGTCTGATCTTCTGGTTGTATAAAGAAATTTGCTGTCCAT
GCTTTTAATGATTATATCTTGTGAGTTTTGAAGGAATTGTTTGTGAGTTT
CGGGTTGCTTTTTGTTTTAGCAGAGTATATCAGGGTTCAGGGTCCATGAA
CTGGAGATATTTGTGAAGTGCTGGGATTGTCTTGTGGGATTTTGGACAGG
TGAGACATGTAGGGAAGGCTTGATGGGACTTATCTATAGGTTGAAATATC
TTTGATTCACAGAGTCTCGTCGAATTTGTGGAAGAGCTTTAAAGGGCTGT
TTCTTTGGGAATTTATTGTTTATAACTAATTTTGACTCCCAAAGCTTAAC
CGGCAATTCCCCAAATATATCTTTTGATCTTTCAGCCAAACCCCAGGTCC
CATAGCTAACTTTTTGGTTAGGTATCTTTCGAACTGGTCAACCAAAAGTA
AGGTCGAAGACTTAAGGAATGAGTTCTTTGTTGGTGTTCTTAGTTTTGGA
CTGAACGAGGGTAGTGATACAAGAGGAGCATAGTGATATTTTAGTACTTA
GTTTTGTTACTGAGGGGATCTGAATCAGTGAATATGGGTGGCAATAGGAC
CATAGTATGGTTTAGAAGGGATCTTAGGATTGAGGACAATCCTGCATTAG
CTGCTGCTGCAAGGGATGGCAGCGTTTTTCCAGTCTATACATGGTGCCCT
AAAGAAGAAGGACAATTCTACCCAGGTCGGGTATCAAGGTGGTGGCTGAA
GCAGTCTCTTTCTTACTTGGGACAATCACTAAAATCTCTTGGTGCTGAAC
TTGTGCTGTTCAAAACCGAGAGTACTCTTGCTGCTCTTTTGGAGTGTATC
AGTGCCATTAAGGCGACAAAAGTAGTATTCAACCATCTTTATGATCCTGT
GTCGCTTGTTCGTGATCACAGCATTCAAGAAAACCTGGTGAAGCTTGGTA
TTTCAGTGCAAAGTAATATGAAAATTTGTTATATGAACTTTGGGAAATAT
ATGATGAGAAAAGAAATGGTTTTTAAAATTTTTGATGCCTATTTGGGAAA
AGTTGTTTGCCAAAGCAAATGGAAACCCGCTTTCAATTCTTCCTCCCAGG
GCGTTTGGTGCAAGCTTGCGGGAAACCCTTTGATGGAGGGTTTTTATTGG
GGAAATTTTAGGTTTTGGAAAAAAAAAAATTTGAAAAAAAACAAAATAAT
GGCCCTTTATTTATAAAA
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