DY263064

Overview
NameDY263064
Unique NameDY263064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1326
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY263064_ssr556 microsatellite DY263064_ssr556:556..567. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY263064 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe GN=spp27 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.513e-14
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 3 
Query:  627 KENPPVGAKRRGGP----GGLNKVCGVSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHIIPL*TYKGIF*TNSSQMPNPQTKVWNP 980
            KE+   G KR+         LNK   +SP+L   +G   + R + VK+LW YI+ ++LQDP++KR I+CDD L+ VFE D   MF MNK L   +  +            Q+P PQ K   P
Sbjct:   97 KEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLTNLMTKI---------PDDQLPKPQPKNEEP 209
[Close]
BLAST of DY263064 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae GN=UAF30 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.163e-11
Identity = 30/69 (43.48%), Postives = 54/69 (78.26%), Query Frame = 3 
Query:  693 VSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 899
            +S  L +++G+  + RTE+V++LWAYI+ +NLQ+P+NK++I+CD+ L ++     T+MF+M+K+LA H+
Sbjct:  126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKS-TNMFEMHKILASHM 193
[Close]
BLAST of DY263064 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.591e-11
Identity = 30/69 (43.48%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:  693 VSPELQAVVGQPAMPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHI 899
            +S  LQ  +G   +PRT++VK +W YI++++LQ+P ++R+I+CD+ +  +F    T MF MNKLL KH+
Sbjct:  126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKMT-MFSMNKLLTKHL 193
The following BLAST results are available for this feature:
BLAST of DY263064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UAF30_SCHPO9.513e-1437.70Upstream activation factor subunit spp27 OS=Schizo... [more]
UAF30_YEAST1.163e-1143.48Upstream activation factor subunit UAF30 OS=Saccha... [more]
TRI1_YEAST2.591e-1143.48Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 P... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CH04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263064 ID=DY263064; Name=DY263064; organism=Citrus clementina; type=EST; length=1326bp
GTGAGAGAGAAAGTGAGAGAGAAAGTGAGAGAGAAGAGAAACGTTAGTGT
ATTTGTTGGTTTGTAATTGTGTGTTAGTTTTTTCAGTTAATTTTTTTTAA
AATTTTTTTTTCATATGTTAGTAGGAGTGAACAAAAGCAAAAGCACTATT
CACTGACAATGGTATCGGACCAGGAGATAGCTAAAGGTGTCGAGACCCTG
CTCCGACAATCCGACCGGAACGCTAGCACTTCGTTAAACGGTGTCGTAAA
GCAGCTGGAGGCAAAGCTTGGGCTAGATTTGTCTCACAAGGCCGGTTTCA
TCCGAGACCAGATCAGCCTTCTCCTCCGCTCGCACCCTACGCCTCAACAA
GTTGCAACAAACACCCAACCGCAACCGCAGCCGCAACCGCAACAACTTCC
TCCAAAAGACCATTTTACCCTCCAACATCATCCGCAATTTTCTCTACCGC
CACAACAATTTCCTCCCCATTTTGCCCTCCACCACCCTCACCCCCATCTT
CCTCAGTTTCCTCAAGAACTCAACTTCAGCCAGCCCCAACCGTCGCAGGC
TGCGGCTCCTCCTCCTCAGCCGCATTCGAACGTCAGTAAAGCTGAGGCCT
TCCCTCAAATTTCGGCTGAAGTAGCTAAAGAAAATCCTCCTGTTGGAGCC
AAAAGAAGAGGCGGCCCTGGGGGTTTGAACAAAGTTTGTGGTGTTTCACC
TGAACTTCAGGCTGTCGTTGGTCAACCAGCTATGCCAAGGACTGAGATTG
TGAAGCAGTTATGGGCATACATAAGGAAGAACAACCTCCAAGATCCAAGT
AACAAGAGAAAGATAATTTGTGATGATGCCCTGCGTGTGGTTTTTGAGAC
AGACTGCACCGACATGTTCAAGATGAACAAGCTACTAGCTAAACATATTA
TTCCACTTTGAACTTACAAAGGAATCTTCTAAACCAATTCAAGCCAGATG
CCGAATCCACAAACGAAGGTATGGAATCCGGGTCAATCTTCTGTAATCAT
ATCTAAAGCACTGGGCCAGTTTTTGGGGGCCTGGGAGAAAAGGAGATGCC
TCCAGCCAAAACCAAACAAAACCGGGTCTGGGAAATACATAAAAAATTTA
CCCATTTGGAAGGAACCTTCAAAACTCCATGGGAAAAATTATGGTAAAGC
AAAACCTTTTCGGAAGCTTTTGTGGAGGGCAAAAAAACACTCCTCTCCCT
TTTGGGGAAAAAAAGGGAAAAAGGCCTTGTTCCCCCCAAACCCCCTCTTT
TTTTAAAGGCGCAACCTCGGGGAAGGTTTTGTAAAAAATTTTTTTGAAAG
GGGGGGGGGGAAAACTCTTTTGGTGG
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