gene-KPL71_018640-mRNA1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3) HSP 1 Score: 230.335 bits (586), Expect = 8.643e-76 Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVR 414 MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD IEVDKETLDML ALGM+++PG+V+ Sbjct: 1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK 119
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3) HSP 1 Score: 226.483 bits (576), Expect = 2.602e-74 Identity = 109/122 (89.34%), Postives = 118/122 (96.72%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 423 MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++ PG+ V+P Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3) HSP 1 Score: 223.402 bits (568), Expect = 3.611e-73 Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 423 MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++ G+ VDP Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3) HSP 1 Score: 223.402 bits (568), Expect = 3.730e-73 Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 423 MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++ G+ V+P Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEP 122
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3) HSP 1 Score: 221.09 bits (562), Expect = 3.610e-72 Identity = 109/130 (83.85%), Postives = 120/130 (92.31%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVD---PVAPGV 438 MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D ++VDKETL+ML +LGM++I G+ +V+ +AP V Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAV 130
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rps1702 PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 6.136e-53 Identity = 81/118 (68.64%), Postives = 102/118 (86.44%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLV 411 MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+ +VP+ S ++ D+I VD++T DML+ALG + IP +V Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rps1701 PE=3 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 1.153e-52 Identity = 83/125 (66.40%), Postives = 106/125 (84.80%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAP 432 MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+ +VP+ S ++ D++ VD++T DML++LG ++IP VRV AP Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQIP--VRVLAPAP 123
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva OX=5875 GN=RPS17 PE=3 SV=3) HSP 1 Score: 166.007 bits (419), Expect = 1.203e-50 Identity = 76/117 (64.96%), Postives = 101/117 (86.32%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGL 408 MGRVRTKTVK+++RQ++E+YY ++ LDF NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++ I+VD++T DML L ++ +P L Sbjct: 1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata OX=5874 GN=RPS17 PE=2 SV=3) HSP 1 Score: 166.007 bits (419), Expect = 1.255e-50 Identity = 76/117 (64.96%), Postives = 101/117 (86.32%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGL 408 MGRVRTKTVK+++RQ++E+YY ++ LDF NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++ I+VD++T DML L ++ +P L Sbjct: 1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Match: RS17_ANOGA (40S ribosomal protein S17 OS=Anopheles gambiae OX=7165 GN=RpS17 PE=2 SV=3) HSP 1 Score: 163.696 bits (413), Expect = 7.277e-50 Identity = 82/127 (64.57%), Postives = 106/127 (83.46%), Query Frame = 1 Query: 58 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV-DPVAPG 435 MGRVRTKT+KK+S+ +IE+YY+R+T+DF TNK+I+EEVAIIP+K LRNKIAGF THLMKR++ VRGIS+KLQEEERERR ++VPD SA++ D IEVD ET +ML+ L N I +V++ +P APG Sbjct: 1 MGRVRTKTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRLRHSQVRGISIKLQEEERERRDNYVPDVSALEQDIIEVDPETKEMLKHLDFNNI--VVQLTNPTAPG 125 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018640-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018640-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018640-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018640-mRNA1; organism=Citrus sinensis; type=mRNA; length=820bpback to top protein sequence of gene-KPL71_018640-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018640-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018640-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018640-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=141bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:19904290..19905109- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=820bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19904290..19905109- (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19904290..19905109- >gene-KPL71_018640-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018640-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018640-mRNA1; organism=Citrus sinensis; type=CDS; length=426bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19904290..19905109- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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