Transcript Overview
Name | gene-KPL71_018651-mRNA3 |
Unique Name | gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1 |
Type | mRNA |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 1935 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-gnl|WGS:JAHMIT|DVS6B01548.t03-exon1 | rna-gnl|WGS:JAHMIT|DVS6B01548.t03-exon1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01548.t03-exon2 | rna-gnl|WGS:JAHMIT|DVS6B01548.t03-exon2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-gnl|WGS:JAHMIT|DVS6B01548.t03-CDS1 | rna-gnl|WGS:JAHMIT|DVS6B01548.t03-CDS1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01548.t03-CDS2 | rna-gnl|WGS:JAHMIT|DVS6B01548.t03-CDS2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1 | gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | polypeptide |
gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1 | gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1-protein | Citrus sinensis | polypeptide |
Homology
BLAST of gene-KPL71_018651-mRNA3 vs. DB:SwissProt
Match: Y5162_ARATH (Uncharacterized protein At5g41620 OS=Arabidopsis thaliana OX=3702 GN=At5g41620 PE=2 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 2.188e-32 Identity = 90/254 (35.43%), Postives = 155/254 (61.02%), Query Frame = 1 Query: 526 EVETRSRAQTPSGSTVGVKTRLKDVSNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQEQRSDQSEISYLMKCFAEEKTAWKNKEREVVGAAIESIAGELEVERKLRRRFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDINDDKSEVEELKRESAIALEEVEK--------EREMIQVADVLREERAQIKLSEAKYQLEEKNAAV-DKLRSQLEVFLGTKK 1260
EV T ++A TPS S ++ L TS ELLK++NR+W E++ S++SL+ AL E+ +R+++ +L++ Q++D+ E+ ++K AEEK KNKE E + +A++S+ LE ERKLR+R ESL++K+ +EL+E K SL VK+L+ ++ ++E +CDE A+ I + E+ LK+++ ++K ++ ++ +A+ +ER Q++L E L KN +V DKL ++E FL K+
Sbjct: 165 EVTTYNKAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKN------LDKDWAGRGGGDQLVLHIAESWLDERMQMRL-EGGDTLNGKNRSVLDKLEVEIETFLQEKR 411
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018651-mRNA3 vs. DB:SwissProt
Analysis Date: 2023-04-17 ( BLAST: C. sinensis DVS_B v1.0)
Total hits: 1
Match Name | E-value | Identity | Description | |
Y5162_ARATH | 2.188e-32 | 35.43 | Uncharacterized protein At5g41620 OS=Arabidopsis t... | [more] |
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InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 511..536 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 521..536 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 160..194 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 453..470 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 90..194 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 596..644 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 427..448 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 130..156 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 90..107 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 423..475 |
IPR043424 | Protein BRANCHLESS TRICHOME-like | PANTHER | PTHR31071 | GB|AAF24581.1 | coord: 33..640 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018651-mRNA3; organism=Citrus sinensis; type=mRNA; length=1935bp ATGTCAAGGCAGCAGAATCAGGCCCAGAATTTTTTCCCGGGAAAGATAAG GAAACGTGGGTGTTCATCGTCAGCTTCGTCAACATCATCGATCGTTCAGA ACTATAGATTCAAAAGAGCAATTCTAATAGGCAAGAGAGGGGGTGGGGGA GGATCCGCTACGCCGGTGCCCACATGGAGGCTGATGCGGACTACTCCGTC TTCGGTATTGCGTGCGATCGACTCCCAGAGTGAGTATGGTGGGTTCGTCA ATAAAGCGAAACAACACCAGCTACAGCTACAGCAACAGCATCAGCATTCT CAGCAGCCAGTTTCCGCGAGGAAGCTGGCCGCGACGCTGTGGGAGATGAA CGAGATGCCCTCGCCGAAGCTGAGAGAGActagtggtggtggtggtgggt aTGATGAGAGGAGGATTAGGAGAGAAGCTCGAGctagagaaagagaaagg gaACGGGTCACCCGGTCCCTTCATTCGGGTTCTTTGCCTCCCCATTTGTC TGATCCATCTCACAGCCCCGTTTCTGAGGTAGAGACCAGATCCCGAGCAC AGACTCCTAGTGGATCAACTGTCGGAGTTAAGACTCGTTTGAAGGATGTT AGTAATGCATTGACTACATCTAAAGAGCTTCTCAAGATCATTAATCGCAT GTGGGGTCAAGAAGATCGGCCTTCTTCGAGCATGTCTCTTGTCTCAGCCT TACATGCTGAGCTTGAGAGGGCTCGCCTGCAAGTGAACCAACTTATCCAA GAACAGCGCTCAGACCAAAGTGAGATCAGCTATCTAATGAAGTGTTTTGC TGAAGAAAAGACAGCATGGAAAAACAAGGAGCGGGAAGTGGTTGGGGCTG CTATTGAATCTATTGCAGGAGAACTTGAGGTAGAAAGGAAACTGAGGAGA AGGTTTGAAAGCTTAAACAAGAAGCTCGGGAAAGAACTAGCTGAGACTAA GCATTCCCTTCTGAAGGCGGTGAAAGATCTTGATACTGAGAAGAGAGCAA GAGTAGTAATTGAACAAGTATGTGATGAGTTAGCCAGGGATATCAATGAT GATAAATCTGAAGTGGAAGAACTTAAGAGAGAGTCTGCCATAGCTCTTGA AGAGGTTGAGAAGGAAAGGGAGATGATCCAGGTAGCTGATGTATTGCGTG AAGAGAGAGCTCAAATCAAACTCTCAGAGGCTAAATATCagcttgaagaa aaaaatgctGCAGTTGATAAATTGAGGAGTCAGCTTGAAGTTTTTCTAGG AACCAAAaaggcaaaagaaaaaggacgCAGTTCTGTAAATCAACCAACCA GTGAGGAGATTGCGGCTTATTTAAGTAGAAGCCATTTTGGTTCCAATCCG ACTGAAGAGAATGATGATATTGATGGAGAAGTAGAAGATGGAGTAGAATA TGAAGAAGACTCGGCTGAAAGTGATCTTCATTCCATTGAATTAAATATGG ACAATAATAACAAGATCTACAATTGGGCTTATGCTCCTGGAGCTGCTCTT GATTCAAGAAAGGTTCCATTTGACGAAGAAGAAATCAAGGGGAGAAAGTC AACCTCTGGCAAACTACCCAAGAGAAGCACTACTCTGCAGAGAAGCATAT CAGATGGAGTTGATTGGGGCAGCCAAGCTGAAAGACTCCAAAATGCGGGA GATGACTTGCATTGGGGAAGACAATCCGATCTAGATAAGCAAGCTCAAGT ATTAGGTTACGGAGATGAAATGCATGGGTATAAATCAGCAAAGGGTCTTA AGGACCAATTGTTGTCAAGTTCTAGGATTGGTGCTTCAAGGGTTTATGCT AGTCCGACGCGGCCTTTGCGAGATCATGGCAATGCAGCTCATGAGCGACC TCCTATGGTGCCAGCGGGTGTTTCAAAGTCGAGGCTATCAGAGTCCAGAG GTGAAAGCCAGAATGCAAGAAAATCCAGGTGGTGA back to topprotein sequence of gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=644bp MSRQQNQAQNFFPGKIRKRGCSSSASSTSSIVQNYRFKRAILIGKRGGGG GSATPVPTWRLMRTTPSSVLRAIDSQSEYGGFVNKAKQHQLQLQQQHQHS QQPVSARKLAATLWEMNEMPSPKLRETSGGGGGYDERRIRREARARERER ERVTRSLHSGSLPPHLSDPSHSPVSEVETRSRAQTPSGSTVGVKTRLKDV SNALTTSKELLKIINRMWGQEDRPSSSMSLVSALHAELERARLQVNQLIQ EQRSDQSEISYLMKCFAEEKTAWKNKEREVVGAAIESIAGELEVERKLRR RFESLNKKLGKELAETKHSLLKAVKDLDTEKRARVVIEQVCDELARDIND DKSEVEELKRESAIALEEVEKEREMIQVADVLREERAQIKLSEAKYQLEE KNAAVDKLRSQLEVFLGTKKAKEKGRSSVNQPTSEEIAAYLSRSHFGSNP TEENDDIDGEVEDGVEYEEDSAESDLHSIELNMDNNNKIYNWAYAPGAAL DSRKVPFDEEEIKGRKSTSGKLPKRSTTLQRSISDGVDWGSQAERLQNAG DDLHWGRQSDLDKQAQVLGYGDEMHGYKSAKGLKDQLLSSSRIGASRVYA SPTRPLRDHGNAAHERPPMVPAGVSKSRLSESRGESQNARKSRW back to topmRNA from alignment at CM039175.1_Chr6_DVS_B:19951619..19954650- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=3032bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19951619..19954650- (Citrus sinensis ATGTCAAGGCAGCAGAATCAGGCCCAGAATTTTTTCCCGGGAAAGATAAG
GAAACGTGGGTGTTCATCGTCAGCTTCGTCAACATCATCGATCGTTCAGA
ACTATAGATTCAAAAGAGCAATTCTAATAGGCAAGAGAGGGGGTGGGGGA
GGATCCGCTACGCCGGTGCCCACATGGAGGCTGATGCGGACTACTCCGTC
TTCGGTATTGCGTGCGATCGACTCCCAGAGTGAGTATGGTGGGTTCGTCA
ATAAAGCGAAACAACACCAGCTACAGCTACAGCAACAGCATCAGCATTCT
CAGCAGCCAGTTTCCGCGAGGAAGCTGGCCGCGACGCTGTGGGAGATGAA
CGAGATGCCCTCGCCGAAGCTGAGAGAGACTAGTGGTGGTGGTGGTGGGT
ATGATGAGAGGAGGATTAGGAGAGAAGCTCGAGCTAGAGAAAGAGAAAGG
GAACGGGTCACCCGGTCCCTTCATTCGGGTTCTTTGCCTCCCCATTTGTC
TGATCCATCTCACAGCCCCGTTTCTGAGGTGAGTTTAATTTTGCATATGT
TTGAGATTTTTTTATTTTATTTTTTGGAATTTGTGGGGGTATGCATAATG
AAATTGAAACTTTTGTTACATGTTGAATTTGCTTCTGTTTCAATGGCTTG
TGATGTTGTTGTGTTTTTTTTTTTAATTATTTTGCGGTAGGTTCGGTCGT
GTTGAAGGTAAGAGGAACGGTTTTATTTTTAAATTCAGGTTTGTTGTCTG
ATTGTTGACGTTGACACAGAGGTATTTTTAGCGCTTTGGCATATGATGCT
GGAGTTATGTCTACGTTTTGCTTTAATTTTTTTGGATCCATATATGTTCT
AATTTGTCCATATTCTGTTAGTAATCAGGCGATAACGGTGATCCTTTAGA
ACTTAGAAGAGTGCAATAAGTGTCATTTAACATGATCACATAAATAGAAA
TTTGAAATCTTGCTTCAATTTGTCTTAGTTAAATATTAAAGAATTGATCC
CCATTGGAAATCAATCAAATTGTTGGGGATAGGATTGCCAGGGCTGGTAG
GTAGCATTCAACCAGATGCAGCAGAATCATACTTCTGTTTGATATGCTTT
ATTGTCAATTAGATGTTGATGCAGCATAACAGGTCATTTCATTATTAAAT
TTATTGATTTCCAGAGGATGGATCGATCAGGCACAGGGAGTCACCATAGA
AGATCATCATCCATTTCTCAGAGGCTTAGGCTAACAGAAAGCAATGGGGG
AGTTTTGGATTCTGTTAGTAATGCTAGCTTAATGGAGGTACACCCACTTA
AGTTTAATATTTGGGCACTTGTACTCTTTAAAAATTAAAAGTGATTTTTG
CATTTTCTAGTTCATCCAGAGCATGTTTAATCTCTGTTGGACACACAAAC
ATTGACGCTGGATGCATATGCATCAGCAGCAACGCACTCACACACACATT
TTCATGGATGTTCGGTTAGTTTGTATGTATAAATTTGTTAAGGTATCACA
CTGAGATGCTCAAGTGTTAATAATTCCAAATCCAAAGTTGGAAAGATTTT
CAGATGTCATGTACCTTGTGTCAGAAAGTTAAGGATTTTGAGAAGTGTTA
TTCAACTCCTCATTTTATGAAGCAGGTAGAGACCAGATCCCGAGCACAGA
CTCCTAGTGGATCAACTGTCGGAGTTAAGACTCGTTTGAAGGATGTTAGT
AATGCATTGACTACATCTAAAGAGCTTCTCAAGATCATTAATCGCATGTG
GGGTCAAGAAGATCGGCCTTCTTCGAGCATGTCTCTTGTCTCAGCCTTAC
ATGCTGAGCTTGAGAGGGCTCGCCTGCAAGTGAACCAACTTATCCAAGAA
CAGCGCTCAGACCAAAGTGAGATCAGCTATCTAATGAAGTGTTTTGCTGA
AGAAAAGACAGCATGGAAAAACAAGGAGCGGGAAGTGGTTGGGGCTGCTA
TTGAATCTATTGCAGGAGAACTTGAGGTAGAAAGGAAACTGAGGAGAAGG
TTTGAAAGCTTAAACAAGAAGCTCGGGAAAGAACTAGCTGAGACTAAGCA
TTCCCTTCTGAAGGCGGTGAAAGATCTTGATACTGAGAAGAGAGCAAGAG
TAGTAATTGAACAAGTATGTGATGAGTTAGCCAGGGATATCAATGATGAT
AAATCTGAAGTGGAAGAACTTAAGAGAGAGTCTGCCATAGCTCTTGAAGA
GGTTGAGAAGGAAAGGGAGATGATCCAGGTAGCTGATGTATTGCGTGAAG
AGAGAGCTCAAATCAAACTCTCAGAGGCTAAATATCAGCTTGAAGAAAAA
AATGCTGCAGTTGATAAATTGAGGAGTCAGCTTGAAGTTTTTCTAGGAAC
CAAAAAGGCAAAAGAAAAAGGACGCAGTTCTGTAAATCAACCAACCAGTG
AGGAGATTGCGGCTTATTTAAGTAGAAGCCATTTTGGTTCCAATCCGACT
GAAGAGAATGATGATATTGATGGAGAAGTAGAAGATGGAGTAGAATATGA
AGAAGACTCGGCTGAAAGTGATCTTCATTCCATTGAATTAAATATGGACA
ATAATAACAAGATCTACAATTGGGCTTATGCTCCTGGAGCTGCTCTTGAT
TCAAGAAAGGTTCCATTTGACGAAGAAGAAATCAAGGGGAGAAAGTCAAC
CTCTGGCAAACTACCCAAGAGAAGCACTACTCTGCAGAGAAGCATATCAG
ATGGAGTTGATTGGGGCAGCCAAGCTGAAAGACTCCAAAATGCGGGAGAT
GACTTGCATTGGGGAAGACAATCCGATCTAGATAAGCAAGCTCAAGTATT
AGGTTACGGAGATGAAATGCATGGGTATAAATCAGCAAAGGGTCTTAAGG
ACCAATTGTTGTCAAGTTCTAGGATTGGTGCTTCAAGGGTTTATGCTAGT
CCGACGCGGCCTTTGCGAGATCATGGCAATGCAGCTCATGAGCGACCTCC
TATGGTGCCAGCGGGTGTTTCAAAGTCGAGGCTATCAGAGTCCAGAGGTG
AAAGCCAGAATGCAAGAAAATCCAGGTGGTGA back to topCoding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19951619..19954650- >gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018651-mRNA3_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018651-mRNA3; organism=Citrus sinensis; type=CDS; length=1935bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19951619..19954650- (Citrus sinensis ATGTCAAGGCAGCAGAATCAGGCCCAGAATTTTTTCCCGGGAAAGATAAG GAAACGTGGGTGTTCATCGTCAGCTTCGTCAACATCATCGATCGTTCAGA ACTATAGATTCAAAAGAGCAATTCTAATAGGCAAGAGAGGGGGTGGGGGA GGATCCGCTACGCCGGTGCCCACATGGAGGCTGATGCGGACTACTCCGTC TTCGGTATTGCGTGCGATCGACTCCCAGAGTGAGTATGGTGGGTTCGTCA ATAAAGCGAAACAACACCAGCTACAGCTACAGCAACAGCATCAGCATTCT CAGCAGCCAGTTTCCGCGAGGAAGCTGGCCGCGACGCTGTGGGAGATGAA CGAGATGCCCTCGCCGAAGCTGAGAGAGACTAGTGGTGGTGGTGGTGGGT ATGATGAGAGGAGGATTAGGAGAGAAGCTCGAGCTAGAGAAAGAGAAAGG GAACGGGTCACCCGGTCCCTTCATTCGGGTTCTTTGCCTCCCCATTTGTC TGATCCATCTCACAGCCCCGTTTCTGAGGTAGAGACCAGATCCCGAGCAC AGACTCCTAGTGGATCAACTGTCGGAGTTAAGACTCGTTTGAAGGATGTT AGTAATGCATTGACTACATCTAAAGAGCTTCTCAAGATCATTAATCGCAT GTGGGGTCAAGAAGATCGGCCTTCTTCGAGCATGTCTCTTGTCTCAGCCT TACATGCTGAGCTTGAGAGGGCTCGCCTGCAAGTGAACCAACTTATCCAA GAACAGCGCTCAGACCAAAGTGAGATCAGCTATCTAATGAAGTGTTTTGC TGAAGAAAAGACAGCATGGAAAAACAAGGAGCGGGAAGTGGTTGGGGCTG CTATTGAATCTATTGCAGGAGAACTTGAGGTAGAAAGGAAACTGAGGAGA AGGTTTGAAAGCTTAAACAAGAAGCTCGGGAAAGAACTAGCTGAGACTAA GCATTCCCTTCTGAAGGCGGTGAAAGATCTTGATACTGAGAAGAGAGCAA GAGTAGTAATTGAACAAGTATGTGATGAGTTAGCCAGGGATATCAATGAT GATAAATCTGAAGTGGAAGAACTTAAGAGAGAGTCTGCCATAGCTCTTGA AGAGGTTGAGAAGGAAAGGGAGATGATCCAGGTAGCTGATGTATTGCGTG AAGAGAGAGCTCAAATCAAACTCTCAGAGGCTAAATATCAGCTTGAAGAA AAAAATGCTGCAGTTGATAAATTGAGGAGTCAGCTTGAAGTTTTTCTAGG AACCAAAAAGGCAAAAGAAAAAGGACGCAGTTCTGTAAATCAACCAACCA GTGAGGAGATTGCGGCTTATTTAAGTAGAAGCCATTTTGGTTCCAATCCG ACTGAAGAGAATGATGATATTGATGGAGAAGTAGAAGATGGAGTAGAATA TGAAGAAGACTCGGCTGAAAGTGATCTTCATTCCATTGAATTAAATATGG ACAATAATAACAAGATCTACAATTGGGCTTATGCTCCTGGAGCTGCTCTT GATTCAAGAAAGGTTCCATTTGACGAAGAAGAAATCAAGGGGAGAAAGTC AACCTCTGGCAAACTACCCAAGAGAAGCACTACTCTGCAGAGAAGCATAT CAGATGGAGTTGATTGGGGCAGCCAAGCTGAAAGACTCCAAAATGCGGGA GATGACTTGCATTGGGGAAGACAATCCGATCTAGATAAGCAAGCTCAAGT ATTAGGTTACGGAGATGAAATGCATGGGTATAAATCAGCAAAGGGTCTTA AGGACCAATTGTTGTCAAGTTCTAGGATTGGTGCTTCAAGGGTTTATGCT AGTCCGACGCGGCCTTTGCGAGATCATGGCAATGCAGCTCATGAGCGACC TCCTATGGTGCCAGCGGGTGTTTCAAAGTCGAGGCTATCAGAGTCCAGAG GTGAAAGCCAGAATGCAAGAAAATCCAGGTGGTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR043424 | BLT-like |
|