Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01554.t01-exon1 rna-gnl|WGS:JAHMIT|DVS6B01554.t01-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01554.t01-exon2 rna-gnl|WGS:JAHMIT|DVS6B01554.t01-exon2_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01554.t01-exon3 rna-gnl|WGS:JAHMIT|DVS6B01554.t01-exon3_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01554.t01-CDS1 rna-gnl|WGS:JAHMIT|DVS6B01554.t01-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
Homology
BLAST of gene-KPL71_018657-mRNA1 vs. DB:SwissProt
Match:
FB322_ARATH (Probable F-box protein At2g36090 OS=Arabidopsis thaliana OX=3702 GN=At2g36090 PE=2 SV=1)
HSP 1 Score: 286.574 bits (732), Expect = 1.465e-85
Identity = 173/329 (52.58%), Postives = 225/329 (68.39%), Query Frame = 2
Query: 4676 ISAVHPDIIETHILTRLDGPTLASASCVSSQLHSLASDESLWTNICHSTWPSTNTPRLRHVISSFPYGPRSFFSDSFTNXXXXXXXXXXXXXXXXXXXEIISAVDVYYKNKLIFSRVVETETASGWFNCSPFRVDLLDPKDSVPTRIPHPD-NEDTCRELAEDLTLSWILIDPIGRRAMNLSSYKPVTVQRHWLSGEAHVRFSLVLSGGDKGSSSEFVQCGI-VVTCGGSQGGEMHVREVNLQVEDMDGTNLNGKDSLVILQRGLEGKRRNVKGREDEGXXXXXXXXXXXXXXXXXXXXXXGALDMLCVAFGVFTFFSSGLYLLWR*NI 5656
IS VH DIIE+HILTRLDG TLAS SC SS LH LAS+E LW+ IC STWPS + G RSFFSD+++ + + S E+ISAVD++Y+ KLIFSRVV+TET + WF SP R+DL+D KD+V T I EDTCR+L +DLTLSWI+IDPIG+RA N+SS++PV+VQR+W+SGE +F+ V+ V+C I VVTCG EMHVREV+L+VE M+GT+LNG+DSLVIL+ +EGKR N RE E K+++E+++EKKRE +EKK+R E D+L VAFG+ F ++ LWR +I
Sbjct: 17 ISTVHDDIIESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTWPSCSG------------GSRSFFSDAYS----MVETAGTVSDLDRPFPELISAVDLHYRGKLIFSRVVKTETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDTCRDLEKDLTLSWIVIDPIGKRAANISSHRPVSVQRNWISGEVEAQFATVVGA---------VECVITVVTCGEE---EMHVREVSLKVEKMEGTHLNGRDSLVILRSVMEGKRVNGSRREVESKKRHEEFMEKKREMKEKKMRVESVFDILTVAFGILGFVLLVVFCLWRTSI 317
BLAST of gene-KPL71_018657-mRNA1 vs. DB:SwissProt
Match:
FB346_ARATH (F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1)
HSP 1 Score: 246.128 bits (627), Expect = 8.324e-71
Identity = 138/285 (48.42%), Postives = 185/285 (64.91%), Query Frame = 2
Query: 4676 ISAVHPDIIETHILTRLDGPTLASASCVSSQLHSLASDESLWTNICHSTWPSTNTPRLRHVISSFPYGPRSFFSDSFTNXXXXXXXXXXXXXXXXXXXEIISAVDVYYKNKLIFSRVVETETASGWFNCSPFRVDLLDPKDSVPTRIPHPD--NEDTCR-ELAEDLTLSWILIDPIGRRAMNLSSYKPVTVQRHWLSGEAHVRFSLVLSGGDKGSSSEFVQCGIVVTCG-----GSQGGEMHVREVNLQVEDMDGTNLNGKDSLVILQRGLEGKRRNVKGREDEG 5506
I+AV D++ ++ILTRLDG +LA+ SC S L+S SDESLW C +TWPST+ R++ +IS+FP G R+FFSDSF + P SE+ISAVD++YK+ +IFSRV TET SGWF CSP RVDL++PK+ +PTR+ D +DT + +L E+L+LSWILIDP +RA ++S+ KPV+V RHWL+GE HV+FS + G+K SE V+ + V + M +REV+L ED DG NL GK SL IL + KRR G E+EG
Sbjct: 21 INAVSSDVLRSNILTRLDGSSLAALSCTCSNLNSFCSDESLWRQQCSATWPSTSDTRVQSIISTFPDGHRTFFSDSFP---FLEHDVGINLPPSVDTSELISAVDIFYKDDVIFSRVHVTETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSLSWILIDPTCKRAADVSTRKPVSVHRHWLTGEVHVKFSSIFVVGNK-KRSEQVEFTVTVVLAVFNRREEETAVMQIREVSLVAEDKDGRNLGGKVSLEILVAAMGMKRRFRAGGEEEG 301
BLAST of gene-KPL71_018657-mRNA1 vs. DB:SwissProt
Match:
FB119_ARATH (F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1)
HSP 1 Score: 243.817 bits (621), Expect = 2.398e-70
Identity = 158/341 (46.33%), Postives = 213/341 (62.46%), Query Frame = 2
Query: 4664 NTARISAVHPDIIETHILTRLDGPTLASASCVSSQLHSLASDESLWTNICHSTWPSTNTPRLRHVISSFPYGPRSFFSDSFTNXXXXXXXXXXXXXXXXXXXEIISAVDVYYKNKLIFSRVVETET---ASGWFNCSPFRVDLLDPKDSVPTRIPHP--DNEDTCRELAEDLTLSWILIDPIGRRAMNLSSYKPVTVQRHWLSGEAHVRFSLVLSGGDKGSSSEFVQCGIVVTCGGSQ---------GGEMHVREVNLQVEDMDGTNLNGKDSLVILQRGLEGKRRNVKGREDEGXXXXXXXXXXXXXXXXXXXXXXGALDMLCVAFGVFTFFSSGLYLLW 5644
N IS +H DII+T ILTRLDGPTLAS + SS L +L ++E LW + TWPS N PR+ ISSFP G RSFF+DS+ + S P+ +ISAVD+YY+ ++I+S+V E ET SGWF SPFRVD+LDPK+SV TRI +P D E +++ E + L+WILIDPI +RA N+SS K V+ +R+WL+G+ +RFS V++ ++ VV+CG ++ GGE+HVR+V LQVED++G + G+DSLVILQ L+GKR E K +YE+YV K + RE K R E A D +C+ FG F+ F LLW
Sbjct: 8 NGDSISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEEKLWQELSIDTWPSINDPRVVQAISSFPSGYRSFFADSYPFTEHTWQSEKHDPPTG-----LISAVDLYYRGEIIYSKVQEMETEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKLNWILIDPIKKRAANISSRKAVSARRNWLTGDLEIRFSTVVTAEAAEVAA-------VVSCGSAEAWKEVDEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVILQGLLDGKRSCKDDEERRAKERYEEYVRMKIQWRENKERREKAQDTICMIFG-FSMF----VLLW 331
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018657-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 3
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 1.47e-85 / Id = 52.58 Expect = 8.32e-71 / Id = 48.42 Expect = 2.40e-70 / Id = 46.33 Sequence FB322_ARATH FB346_ARATH FB119_ARATH
Match Name E-value Identity Description
FB322_ARATH 1.465e-85 52.58 Probable F-box protein At2g36090 OS=Arabidopsis th... [more] FB346_ARATH 8.324e-71 48.42 F-box protein At3g44326 OS=Arabidopsis thaliana OX... [more] FB119_ARATH 2.398e-70 46.33 F-box protein At2g27310 OS=Arabidopsis thaliana OX... [more]
back to top
Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018657-mRNA1; organism=Citrus sinensis; type=mRNA; length=5773bp back to top protein sequence of gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1
>gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=336bp back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:19999699..20006866+
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=7168bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19999699..20006866+ (Citrus sinensisCCACATTTATTTGTTAACgaaattgttattaaaataaattatttctattt
tagttattaattattgtaattattcaaatttattaatgttatcgttgttg
ttgttgttgatttattaattattgctatcatttattaatgttattattat
tattaattattactattatttatttactaattatttaaatattataaatc
atcatcatcatcaaatgaCAATATGACACAAAGGgcattataataaatta
taattattcattCCGATTCtaggataaaataaatatatcaatataaataa
agttcATTCCGGTTCCGATTCCTACAGctcaagtaaataatttattctga
tttccattcatgattttgattttagtCTATTTCAATTTTAGCCCATTCca
attattgattaataaatgCAGTAcaagttcttttgattttcaGGATTGTG
Tgccatatatattttaatagtagtatatgtatataatctatttttttaat
tcttttattcattaacCACCCAtcacaatttaaattttttctcattACAT
GAGTCATGAGAGAATCCTAATCGGAGTAGTAATATTCTCCCAACAAgatt
taatttgaagaaaattaaaagttatctttctctttaaaatatccttttaa
tttcaataaacgaTTTTGAATCGTGTACTATTTTCCTTTTAGTTTCCATT
CAAATATATTTCTAAAAGATACAACGATCGATAAACTGACTGCAACTCGT
TAAAGAGATTAATTCTCACTCATTATATATTATGAAAGAGCTGCGTAATT
ATATATCGAACCGCAAATTCTTGTTAAAACtcattttgtataaattaaga
TCACATAAATGAAagcacataaataaaaaaattaaattatacgaGGGTAT
TGATGTAACATCATTTTCGGATTATAATTCTTACGCACTATATATTATGA
GAGAGCTGTGTAATTCTGCACCGCCTCTTTGAACCCACTAAACAAAAGCA
CCGGCGGGGCTGCATGGCTAGCTGCCTTGCATCATTGTTTGTGCAGGGTC
ACTGAAAGCaacaataattgatttttattttcggatggcatatttttatt
tgacagaATTCGAAAGACACCGAAATAGTAGTTGGAAATTTCGAACTGAA
TTGACCAGGCTTTCCAGTAGAAGAGTGGAGATGTAATTGGGATTGTAATT
GTATTAAgaggaaaacaaaatatataataatagaaataaataaattggtc
TAAAACAGAGAAGAttgattatgaaaaaaaaagataagataaTAGTAATT
TCACTgaaatacattaattaataagagaaatgttaaaaattttaatattt
gagtcttaatttaaatttcaactaATATGACATTCATAGattgaatgaaa
tatttaaataataaataattttatatttattatttaataaataagtgatA
GTGAGATAAtgattgaataaattaagaaatattttgtgGGCCATAGATCC
Tgcaagtttaattaatttaattttaataattgcggggaagatataataaa
attatctgaATTAGTTGTATTAGGTTAAATAAGATATTCGAAGCAAAAAT
TTGTCTTTTTGAACAATTATAGGACCGATGAAAATTTTCTTGCCGTAAGC
GATTTTTTTAGACagagttaaataaattaatctgaaaagattcaattata
tatgatgcatcaaaaaattaaaaaaaaaaatgattatggCCCGCATAGta
ttgatttatatatattcagCACATCT GTAAGTGTTtggtaatcttaaaaa
tactTAGATACTGTTTGAGGTTGCTGTAAAATAGTCGggccttaaaaatt
acaaaatgttaGTAAACATTTGTAGtcgtaatttttttaacttcaattga
ttttatttcataattaatctataaaaaatctataatatctttattagttt
tattaaataaaacttatatcttatatttttcacatataatcaacattttt
ttataattattaatttttttttttcacaatagctATAATTTAAACTACAA
CATCTCTTTAACCACTTATGCCCTCGTCGGTTTTTTactttgaaatgttg
aaataaacaaaaatattttctttcacttAAATTAAGGAACATTCAAATTA
CATGCATGCATTAGTATTACAACTTTGAAACAGATCCAATGCAACATTTC
TTTTCCCCCAGCTGATTTCTAACTGTCACAAACATTCTTCTTGGCCAAAT
TGTGTACCTACAAATACCAGAACTCAACTTGCAAGAATTAGCTGTGATTC
TACAATCCAACTAATAATGACAGCTCAAATTACTTGTTTAAATTGGTCAA
TGATAATTAGCAAATCCTGATGCTAACACCCTGCCCTAAACGTAATTTAA
CTTttggaaaattgaaaatatcatGCCTTAATCCAGACGCTAACGTCATG
CCCTAATcctaatttaacttttaaaaaaatggtaaacaATTGAACATCAT
TTTCACTTCCATATGTATCTTGGAATTTAGTacccaattaaaaattttgt
tttaatttattataatcatataaaCAGGCAGCGGCCTGTTGTCCGTATTC
GTTAATTCTGATTGAGATGCAATCATGCAATGTCTTTGACCTAATCCAAT
CTGAAAAGTCATtgcctcattttttttttttaaatgtctaagtattttct
ttggtttaaaaattaatcaaatttagttGAAAATTGACTATCAAGTTTga
taccaatttttttttatgtgcatCCTTTGAGTCATTAGCAAACGATAAAA
GTGATTCCTTAGCTAATCTCAAAtgactgataatttttttttttttccca
aattaGCCAAAGCTGGCAATTAATCTTACAACGCATAAATTCGAACCACG
TAGCATATTCTATCGAAGGGAAAATGTTATCTTATTGGACTGCAGGTTTG
TCTTAGCATATTTTATTggaatcatttttatttattttcgaGTGTGAACT
GATGGGCTGCATCAATTTAAACATTCAGCTATCTTGACAGCATTATCAGA
ATAATATCTCTCCCGCAgacttttacttttttaaaacttaattttaatag
ttgagttcatatcaatttatattttagtatttataatattatatgcaTTC
CATGAGTTTTGATCGAGTAATTTTCAAACAACTTTAACAATGTTGATAAT
GTGTGACAATGATAAAACAGtaatatctaataatttttattaaataaatt
tttgtatatctagtttgtgtgtgtgtgtgtgtatttaatCATTCTTCTTT
CAAAAATATCATGTCTTTGTTAAATTGAGGATATCCTCACTAGAGactca
ttatcatcatcatcatcatcatcaaatgtCTTTTGatactttatatttaa
attaacatttaatttttaatttttttttgttaattagtCTAATAGGTCAT
CAATCTTTagctaaatataataaaaaaaaagagattaaggTATGAACACA
TGAGCTGCTAGAGAAACCTCCGCTCATAAAATCCAATTTAGAAGCTCGGC
AATTTGTGATGATCTTGAGCACCTCAGCTGATTTTCGTAAATCTTATTCT
TATTCCATCTTTTGAACTTAAGTTTGTTAGGTTTCTACTTCCATCCTCGG
GTTATTTGACTAAAAGATAACATCGTCGTATGTACAAATTGATTGAAGGT
TCTAAACGATTTAGTACCCTTGATTATCAAAGACACATTGACCAGACGCa
ttgtgatttttttagtgttttttttttcaagtgcATTTATAATACAATCT
AATTATTAGAATATTTTAAGACAAAAATCaacatttttatatattttcga
ATACttatattgataaattattaaaaattgccCTTTGCAAGGACATTGTC
AAACGCGTATTCATTTAGTAAGcattcatttgaaaaaatatcgaggaaaa
aaaaaagcattcatttgaaaatgataTCGAGCTATCAccgtttatatttt
attctccgtgtatatataaaataaaatacgcTATCACGCACACGGTATCA
CATTATTTAACTATATATTCTGATATTAAATCAATCAAcatctagggatg
gcaatggattggatttgatcCAAGATCCATgtgatccaaatccaatcggA
TCGGATTTGGATCGgtttaaaatggatttggaTCGGATTTGGATATCGAT
GTGCGGATCTAAGACGGATCTGGAGCAGATATGGATCtatcttaatatct
aaatccatatccatatccactcatcttttaattttattttattttaaaag
tttcttaataattgtggaatgataatgataataaattttattcatagcaT
ATTAGTAGTATTTACCATGAATTTAaactcttaaaacttaaag gttagtt
ttgtaaatttaaaggtcAGCCAAGCCTCAAAGCATGTACATgcaatattc
aaattgcaaTCCAAGTAATATAACTtggtaatttattatatcatattgac
caaataatttttaaggaatatagttattcatatatttagtcaaatatggt
cataataaaaataataaaggactgaatataaatcatatttaatttatatg
tcattatcTAATGTTGTAGGAATGAAGGTAGGTGTATCGTGGATACTAGA
ATGATGAAGGAGACAATAGAATATTAGATTGATCTTACTCCTGCAATTAC
TTctgaatgatattttattatctttcttatttattgttttggtGTAGAAG
TATAagctacaatatttattatatttttgagaaaaattatataatttatt
tgttatcaatacATTTTAGCACTCAATTttcaatctaaaaaattattact
tttttattacaaaattttaaaattcatgacGGATCTAGAGcagatttgga
ttttaattttttttttcggattTAGAGCAgatatagatatttatttcttt
tttggatctGGATATGGAGCGAAAAATATGGATTCATAACGGATCTGGAG
CAGATACGGatcttgaattttattatggatttgGATCTGGAGCAGAGTAG
ATCCAACCCATATCtgccccattgccatccctatcaACATcaaggaataa
aaaaaaaactttatattttaataactacTAATAACAAGATTGAGACGTTA
AATACATTATTccattaaaataatcaaacccTAACAATTAGATATAAGCA
ATTGGTCCCACATGAACTACGTGACTTCCCTTCTTAGACATTCTACCGCC
TTTGAAGGTTATCTAATTCACATCGcataaatactaaaattacGCAACTG
CCTTGAGATTAGAAAATTACTTCTCCTTAATTAGTGACATCGATTGGTAA
TAAGAAATACAAATTAACACTTTCAATAATTGGAAAACAATTTAGAATAT
ATTAGAATtcatacaattaaataataatacatgtATCATATGTGCAATTG
AACTTTTTATAACTATCAATTGCATGctagttttttaaataaatatacat
atgtCATAACATGACTTATTTATTGTATGATTGATATATTATCTCACaga
tattctaaaatttttccaacattagataataaaagaaaatataaaaaaaa
atctactttattatatgatttttcgatattttttaaatcacatattatta
atagtattcattttttatagttattttattatactaatattaaataagat
aataaaaatatcaattattgaaGATTACGAACATAAccctaatattatta
aataaatattattttattcaatcatGCAATGGATATGAGGGGGGCGTTAC
TCGTGTACTCGGGTAATCGAGTTCATTCACGAGGACCACGGAAGCAAGAG
TGGATGgcaattttgttattaacataaaaaacaATGTCATTTGAAAAACA
GTCTAACCCATCTCTGTCTTTCTTCATCTCCTATATAAACttctatataa
actcaaaaacaTTTCTCAAATCACACAAACTCTATATCAAAACAGTGGGA
AACATTAAACAAAGCAGCCAACAGTAACATGCAGATGGCTCCTCCATCGT
TCGATCAAAACACCGCCAGAATCTCCGCCGTCCATCCCGACATCATCGAA
ACTCACATCTTAACTCGCTTAGACGGGCCCACCCTCGCCTCCGCCTCCTG
CGTCTCCTCTCAGCTCCACTCCCTCGCTTCCGACGAATCCCTCTGGACGA
ACATTTGCCACTCCACGTGGCCGTCCACTAACACGCCACGTCTTCGCCAC
GTGATTTCCTCGTTCCCCTACGGCCCCCGCTCTTTCTTCTCCGACTCCTT
CACTAACCCCGACCAGAAACCTGCCTCCACGTCATCTTCCTCTCCCAGTC
TCAACCGTCCGTCGGAAATAATCTCAGCCGTTGATGTGTATTACAAAAAC
AAGCTCATATTTAGCAGAGTTGTCGAGACGGAGACTGCTAGCGGGTGGTT
TAACTGCTCCCCGTTTAGAGTTGACTTACTCGACCCGAAAGACTCTGTGC
CGACCCGAATTCCTCACCCCGACAATGAGGACACGTGCCGCGAGCTCGCC
GAAGATTTGACGTTGAGTTGGATTTTGATCGACCCGATCGGACGGCGGGC
GATGAACTTGTCAAGTTACAAGCCGGTGACCGTGCAGCGTCACTGGCTAA
GCGGAGAAGCGCACGTGcgcttttctttggttttgtCCGGAGGCGACAAG
GGATCATCCTCGGAGTTCGTGCAGTGCGGGATTGTGGTCACGTGTGGGGG
GTCTCAGGGGGGGGAGATGCACGTGAGGGAGGTGAATTTACAAGTGGAGG
ACATGGACGGAACGAATTTGAACGGGAAGGACAGTTTGGTCATTTTGCAG
AGGGGGTTGGAGGGCAAAAGGCGAAATGTGAAAGggagggaagatgaagg
aaagAGGAAATACGAAGATTATGTAGAAAAGAAGagggaaagaagagaaa
agaagttGAGGACAGAAGGGGCATTAGATATGCTGTGCGTGGCTTTCGGG
GTTTTCACGTTTTTTTCTTCAGGCTTATATCTTCTAtggagataa back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19999699..20006866+
>gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018657-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018657-mRNA1; organism=Citrus sinensis; type=CDS; length=1011bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19999699..20006866+ (Citrus sinensis back to top
