gene-KPL71_018684-mRNA2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_ARATH (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At2g23930 PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 3.584e-48 Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVSKS 237
MSRSGQPPDLKKYMDKKLQIKLNANRM+ GTLRGFDQFMNLV+DNTVEVNGN+K DIGMVVIRGNS+VTVEALEPV +S
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGRS 79
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_MEDSA (Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 6.892e-45 Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 228
MS SGQPP LKKYMDK+LQI L ANRMIVGTLRGFDQFMNLV+DNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV
Sbjct: 1 MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_MOUSE (Small nuclear ribonucleoprotein G OS=Mus musculus OX=10090 GN=Snrpg PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.197e-26 Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 228
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGMVVIRGNS++ +EALE V
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_HUMAN (Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.197e-26 Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 228
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGMVVIRGNS++ +EALE V
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_BOVIN (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.197e-26 Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV 228
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGMVVIRGNS++ +EALE V
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_DROME (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.516e-26 Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV-EVNGNEKNDIGMVVIRGNSVVTVEALEPV 228
MS++ PP++KKYMDK++ +KLN R + G LRGFD FMN+V+D+TV E N KN+IGMVVIRGNS+V VEAL+ V
Sbjct: 1 MSKA-HPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXGL_HUMAN (Putative small nuclear ribonucleoprotein G-like protein 15 OS=Homo sapiens OX=9606 GN=SNRPGP15 PE=5 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 3.736e-23 Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIGMVVIRGNSVVTVEALEPV 228
MS++ PP+LKK+ DKK +KLN R + G LRGFD FMNLVID VE+ +G +KN IGMV IRGNS++ +EALE V
Sbjct: 1 MSKA-HPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN-IGMVEIRGNSIIMLEALERV 76
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_DICDI (Probable small nuclear ribonucleoprotein G OS=Dictyostelium discoideum OX=44689 GN=snrpG PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.130e-22 Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1 Query: 22 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNSVVTVEALEPVS 231
PDL K +DKKL IKLN NR + G LRGFD FMN+ + +TVE V+ EK +IGMV+IRGNS++ +E LE ++
Sbjct: 9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSILLMEPLESMA 79
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_CAEEL (Probable small nuclear ribonucleoprotein G OS=Caenorhabditis elegans OX=6239 GN=snr-7 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.198e-21 Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN-DIGMVVIRGNSVVTVEALEPVS 231
MS++ PP+LKKYMDK++ +KLN NR + G LRGFD FMN+VID VE + + ++GM VIRGNSVV +E E +S
Sbjct: 1 MSKT-HPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGNSVVIMEPKERIS 77
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Match: RUXG_SCHPO (Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=smg1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.415e-18 Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = 1 Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 231
MS++G PDLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E V+G EK IG V IRGNSV+ +E L+ ++
Sbjct: 1 MSKAG-APDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018684-mRNA2 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018684-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018684-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018684-mRNA2; organism=Citrus sinensis; type=mRNA; length=243bpback to top protein sequence of gene-KPL71_018684-mRNA2_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018684-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018684-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018684-mRNA2_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=80bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:20145854..20147359+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1506bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20145854..20147359+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:20145854..20147359+ >gene-KPL71_018684-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018684-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018684-mRNA2; organism=Citrus sinensis; type=CDS; length=243bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20145854..20147359+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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