Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01680.t01-exon1 rna-gnl|WGS:JAHMIT|DVS6B01680.t01-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01680.t01-exon2 rna-gnl|WGS:JAHMIT|DVS6B01680.t01-exon2_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon rna-gnl|WGS:JAHMIT|DVS6B01680.t01-exon3 rna-gnl|WGS:JAHMIT|DVS6B01680.t01-exon3_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01680.t01-CDS1 rna-gnl|WGS:JAHMIT|DVS6B01680.t01-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01680.t01-CDS2 rna-gnl|WGS:JAHMIT|DVS6B01680.t01-CDS2_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS rna-gnl|WGS:JAHMIT|DVS6B01680.t01-CDS3 rna-gnl|WGS:JAHMIT|DVS6B01680.t01-CDS3_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
Homology
BLAST of gene-KPL71_018783-mRNA1 vs. DB:SwissProt
Match:
PSK6_ARATH (Putative phytosulfokines 6 OS=Arabidopsis thaliana OX=3702 GN=PSK6 PE=2 SV=2)
HSP 1 Score: 63.1586 bits (152), Expect = 1.651e-13
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 136 ITHISTFKGVKQDLVNP-MGSEECSENDEECLKRRMTAEAHLDYIYTQHHK 285
I + + V++D VN MG E C E DEECL+RRM E+HLDYIYTQHHK
Sbjct: 30 INPLVSATSVEEDSVNKLMGMEYCGEGDEECLRRRMMTESHLDYIYTQHHK 80
BLAST of gene-KPL71_018783-mRNA1 vs. DB:SwissProt
Match:
PSK5_ORYSJ (Phytosulfokines 5 OS=Oryza sativa subsp. japonica OX=39947 GN=PSK5 PE=1 SV=1)
HSP 1 Score: 48.521 bits (114), Expect = 1.315e-7
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query: 82 SARPFAQNQGEMVVKADGITHISTFKGVKQDLVNPMGSEE------CSENDEECLKRRMTAEAHLDYIYTQ 276
+ARP + +V DG T G ++ MG+ E C E +EEC++RRM +AHLDYIYTQ
Sbjct: 33 AARPLPASAAAELVLQDGAT------GNGDEVSELMGAAEEEAAGLCEEGNEECVERRMLRDAHLDYIYTQ 97
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018783-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 2
50 100 150 200 250 Expect = 1.65e-13 / Id = 58.82 Expect = 1.32e-7 / Id = 39.44 Sequence PSK6_ARATH PSK5_ORYSJ
Match Name E-value Identity Description
PSK6_ARATH 1.651e-13 58.82 Putative phytosulfokines 6 OS=Arabidopsis thaliana... [more] PSK5_ORYSJ 1.315e-7 39.44 Phytosulfokines 5 OS=Oryza sativa subsp. japonica ... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018783-mRNA1; organism=Citrus sinensis; type=mRNA; length=291bp back to top protein sequence of gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1
>gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=96bp back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:20866910..20867415+
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=506bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20866910..20867415+ (Citrus sinensisATGAAGAAGCAGAGTGTTAATAATGTCTTCCTCAACTCTCTCCTCtttgc
tcttcttcttttgtccTATTCAAAGTCGATTTCTGCACGTCCCTTCGCAC
AAAACCAAG GTGAAATGGTGGTGAAGGCTGATGGGATTACTC
ATATAAGCACTTTCAAAGGGGTTAAACAAGACCTTGTGAAT CC
GATGGGGTCAGAGGAGTGTAGTGAGAATGATGAGGAATGCCTGAAGAGGA
GGATGACAGCAGAAGCTCACTTGGATTATATTTACACCCAGCACCATAAG
CCTTAG back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:20866910..20867415+
>gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018783-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018783-mRNA1; organism=Citrus sinensis; type=CDS; length=291bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:20866910..20867415+ (Citrus sinensis back to top
