EVM_prediction_chr2.1_tiancheng.1905
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:29085881-29086579 FORWARD LENGTH=232) HSP 1 Score: 104.375 bits (259), Expect = 1.282e-27 Identity = 87/238 (36.55%), Postives = 118/238 (49.58%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPL--------KKLTP-----------------------------EPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKP--LRPD----------CVSPGCFPAPLLRQKASK----KRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF* 185
+ +DDS ++PG +PF WEIRPGVPK + QP KKL+P PLSP T +P+ L+ R P + F+ P SFRS+PR SERW+ +P +RP+ GCFP+P R + K +R R E++ Y SD+ET++ W+VSSR+++SP SP SSFSS + SPR +AEW GFGLF*
Sbjct: 4 IDVDDSFKRPGTIPFSWEIRPGVPKTRMSQPGNTTPLQPPKKLSPLRFKPLSHSQPLLPPALSPPSSSFISNSKSRPLSPLTPHSFST--TPSKLKPPRTPSSLSGFYSP----GPSFRSSPRAFSERWQLHRPNRIRPESEPEPSSDFSVAGFGCFPSPKFRLRKVKSGGSRRKSGSRSEND-YYCSDMETMSPWTVSSRRSVSPRWESPK-SSFSSLRFSPRFANEAEWVGFGLF* 233
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: V4V643|V4V643_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002610mg PE=4 SV=1) HSP 1 Score: 360.918 bits (925), Expect = 1.136e-125 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKPLRPDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKPLRPDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF
Sbjct: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKPLRPDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: A0A2N9FDH9|A0A2N9FDH9_FAGSY (DUF4005 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12833 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 9.157e-59 Identity = 115/197 (58.38%), Postives = 137/197 (69.54%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTR----------SSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKP---LRPDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
M IDDS KPGAVPFKWEI+PGVPK+QQQQ K+ P LS ++ NH + S + QKLRPPPA +F PP E R++SFRS+PRTRSER RF++P LRPD V GCF + LR+KA K ++ PESEP Y+SDLETL+RWSVSSRK+LS F SP SSS SY S+PRP+ D EWAGFGLF
Sbjct: 1 MAIDDSFTKPGAVPFKWEIKPGVPKVQQQQQKKQTLQPPELSKPRDY-NHRKVLPIPPSRSPSPTSSPQKLRPPPAGSYFVPPTEARTRSFRSSPRTRSERSRFDRPRSLLRPDVVPAGCFLSSFLRRKAGKTNLMKLGPESEPDYTSDLETLSRWSVSSRKSLSQFRDSPLSSSLESYPSTPRPMNDVEWAGFGLF 196
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: A0A067GLK4|A0A067GLK4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g038958mg PE=4 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 2.661e-57 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERW 92
MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERW
Sbjct: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERW 92
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: A0A2C9WEW7|A0A2C9WEW7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G166600 PE=4 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 4.079e-57 Identity = 124/192 (64.58%), Postives = 138/192 (71.88%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHT----RSSPAPL--QKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKPLR--PDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
M IDDS +KPGAVPF WEIRPGVPKI QQP KL P P + + R SPA L Q L+PPPA F PP EPR+ SFRSTPRTRSERWRF++P R P+CVSPGCFP+PLLR+K SK+R ESE Y+SDLETLARWSVSSRK+ SPF S ASS SSY+SSPR V DAEWAGFGLF
Sbjct: 1 MAIDDSFKKPGAVPFNWEIRPGVPKINTQQP--KLQPRQLSPPVLPSPSPRFAPRRPSPASLNQQMLKPPPAGFIFLPPPEPRTHSFRSTPRTRSERWRFDQPTRVGPECVSPGCFPSPLLRRKDSKRRTTH-VAESESDYTSDLETLARWSVSSRKSFSPFRESSASSY-SSYRSSPRVVSDAEWAGFGLF 188
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: A0A5C7H965|A0A5C7H965_9ROSI (DUF4005 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_022184 PE=4 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 2.297e-55 Identity = 125/190 (65.79%), Postives = 142/190 (74.74%), Query Frame = 0 Query: 1 MTIDD--SCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEP--RSQSFRSTPRTRSERWRFEKP--LRPDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
M IDD S KPG +PFKWEIRPGVPKIQ Q + PP SPA H SP P KL+PPPA F PP EP R+QSFRSTPR RSERWRF++P +RP+ VSPGCFP+P L+Q+ SK+RV + RPE EPGYSSDLE+L+RWSVSSRK+LS +ASPASSS SSYKSSP PV DAEWAGFGLF
Sbjct: 1 MAIDDDESFTKPGTIPFKWEIRPGVPKIQHHQHKQTPNSSPPESPA-----HQHKSPTPPLKLKPPPAGFQFLPPFEPQARTQSFRSTPRIRSERWRFDQPTRIRPEYVSPGCFPSPFLKQRDSKRRVNVCRPEFEPGYSSDLESLSRWSVSSRKSLSQLSASPASSSLSSYKSSPHPVSDAEWAGFGLF 185
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: B9S2W2|B9S2W2_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0562950 PE=4 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 4.904e-54 Identity = 122/197 (61.93%), Postives = 142/197 (72.08%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRS-----SPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKPLR--PDCVSPGCFP-APLLRQKASKKR-----VLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
MTIDDS +KPGAVPFKWEIRPGVPKIQ Q K+L+P SP+ F+ S +P P KL+PPPA F PP EPR+ SFRS PRTRSERWRF++P R P+CVSPGCFP +PLL++K SK+R + +P ESE Y SDLETLARWS+SSRK+ SPF S SS SS +SSPRPV DAEWAGFGLF
Sbjct: 1 MTIDDSFKKPGAVPFKWEIRPGVPKIQHHQQPKQLSPPKLPSPSPPFNLRRPSVSPLPTPQPQLKLKPPPAGFIFLPPPEPRTHSFRSAPRTRSERWRFDQPTRVGPECVSPGCFPSSPLLKRKGSKRRTSHVHIDIPGSESEGDYVSDLETLARWSLSSRKSFSPFNDSSVSSY-SSSQSSPRPVSDAEWAGFGLF 196
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: A0A067K9P8|A0A067K9P8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12119 PE=4 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 4.614e-53 Identity = 117/187 (62.57%), Postives = 143/187 (76.47%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTP-EPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKP--LRPDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
M +DDS RKPG+VPFKWEIRPGVPKIQ QQ ++ PP P+ +R +P P QKL+PPP F PP EPR++SFRS+ RTRSERWRFE+P +RP+CVSPGCFP+PLL++K SK+R + PESE Y+SDLETLARWS+SSRK+ SPF S ++SSFSSY+SSPR +AEWAGFGLF
Sbjct: 1 MAVDDSFRKPGSVPFKWEIRPGVPKIQHQQQKQQPKKLSPPTLPSPSQPFTSRLTPQPQQKLKPPPGGFVFIPPPEPRTRSFRSSQRTRSERWRFEQPTRVRPECVSPGCFPSPLLKRKDSKRRTVQ-LPESETDYTSDLETLARWSLSSRKSFSPFRDS-SASSFSSYQSSPRVPSEAEWAGFGLF 185
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: A0A5N6RQX4|A0A5N6RQX4_9ROSI (DUF4005 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_018560 PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 6.525e-53 Identity = 108/191 (56.54%), Postives = 132/191 (69.11%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKP-----LRPDCVSPGCFPAPLLRQKASKKRVLLPR--PESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
M +DDS KPGAVPFKWE +PGVPK+QQ L H P P QKLRPPP+ +F PP+EPR++S R++PRTRSERWRF++P L PD VSPGCF + L +K K+R + + P SEP Y+SDLETL+RWSVSSRK+LSPF SP+SS SSY+SSPRP+ DA+WAGFGLF
Sbjct: 1 MAVDDSFTKPGAVPFKWETKPGVPKLQQ------------LHQQQTSSYHGTELPTPPQKLRPPPSGSYFLPPLEPRTRSIRASPRTRSERWRFDQPTTLVGLGPDVVSPGCFLSSFLGRKFEKRRPRIRKMCPASEPDYTSDLETLSRWSVSSRKSLSPFQDSPSSSFSSSYQSSPRPMSDADWAGFGLF 179
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: A0A7J7DRX3|A0A7J7DRX3_TRIWF (Cyclin-A1-4 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G01012 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.512e-52 Identity = 112/189 (59.26%), Postives = 132/189 (69.84%), Query Frame = 0 Query: 1 MTIDD---SCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPLQKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKP--LRPDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
M +DD SC+KPGAVPFKWEIRPGVPKIQ K P + D + S P +KL+PPPA F P E R++SF STPRTRS WRFE+P LRPD VSPGCFP+PLLR+K +K+RV P P EP +S+LETL+RWSVSSRKT SPF ++SS+S Y+SSPRPV D EWAGFGLF
Sbjct: 351 MGVDDEDYSCKKPGAVPFKWEIRPGVPKIQHDHH-KPQPPPLSPPASPFLDENHHSLPTTPRKLKPPPAVFSFLPQPELRTRSFLSTPRTRSNHWRFEQPVPLRPDAVSPGCFPSPLLRRKENKRRVRKPDPAYEPDCNSELETLSRWSVSSRKTFSPF--RDSTSSYSPYQSSPRPVSDTEWAGFGLF 536
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Match: A0A7N2MK80|A0A7N2MK80_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.069e-49 Identity = 120/193 (62.18%), Postives = 143/193 (74.09%), Query Frame = 0 Query: 1 MTIDDSCRKPGAVPFKWEIRPGVPKIQQQQPLKKLTPEPPLSPAVEFDNHTRSSPAPL------QKLRPPPAALHFFPPVEPRSQSFRSTPRTRSERWRFEKP---LRPDCVSPGCFPAPLLRQKASKKRVLLPRPESEPGYSSDLETLARWSVSSRKTLSPFTASPASSSFSSYKSSPRPVVDAEWAGFGLF 184
M ID+SC KPGA+PFKWEI+PGVPK QQ K PP P NH + SP P QKLRPPP+ HF PP+EPR++SFRS+PRTRSERWRF++P +RP+ V+PGCF + L++K+ K R+ P PESEP YSSDLE L+RWSVSSR++LSPF SP SSSFSSY+SSPRPV DAEWAGFGLF
Sbjct: 1 MAIDESCTKPGAIPFKWEIKPGVPKQHVQQQQHKRQQSPPELPKPRDYNHRKISPLPTPPSVSPQKLRPPPSRSHFVPPMEPRTRSFRSSPRTRSERWRFDRPASFVRPEVVAPGCFLSSFLKRKSVKTRLQKPGPESEPDYSSDLEVLSRWSVSSRRSLSPFRNSPMSSSFSSYQSSPRPVSDAEWAGFGLF 193 The following BLAST results are available for this feature:
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. Araport11
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. Araport11
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of EVM_prediction_chr2.1_tiancheng.1905 vs. ExPASy TrEMBL
Analysis Date: 2023-08-23 (Blastp of Citrus sinensis cv. Newhall v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus sinensis cv. Newhall v1.0 proteins
Date Performed: 2023-08-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.chr2.1_tiancheng.1905_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1905_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.1905; organism=Citrus sinensis; type=mRNA; length=555bpback to top protein sequence of evm.model.chr2.1_tiancheng.1905_cs-GNU_v1 >evm.model.chr2.1_tiancheng.1905_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1905_cs-GNU_v1; Name=evm.model.chr2.1_tiancheng.1905_cs-GNU_v1; organism=Citrus sinensis; type=polypeptide; length=185bpback to top mRNA from alignment at chr2.1_tiancheng:32071687..32072520- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=834bp; location=Sequence derived from: chr2.1_tiancheng:32071687..32072520- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr2.1_tiancheng:32071687..32072520- >evm.model.chr2.1_tiancheng.1905_cs-GNU_v1 ID=evm.model.chr2.1_tiancheng.1905_cs-GNU_v1; Name=EVM_prediction_chr2.1_tiancheng.1905; organism=Citrus sinensis; type=CDS; length=555bp; location=Sequence derived from: chr2.1_tiancheng:32071687..32072520- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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