orange1.1g036284m.v1.1, orange1.1g036284m.v1.1_Csinensis_154_v1.1 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana OX=3702 GN=SYP124 PE=2 SV=1) HSP 1 Score: 435.261 bits (1118), Expect = 3.886e-154 Identity = 223/281 (79.36%), Postives = 252/281 (89.68%), Query Frame = 1 Query: 1 MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAII 843 MNDLFS+SFKKYTDLK QA DD+E+G+E NLD FFEDVENVK MK VE LYK LQ++NEE K VHNA+ +KELRA+MD DV QVLKRVK+IK KLEALE++NA SRN+ GCGPGSS+DRTRTSVVSGLGKKLKDLMD FQ R +M EYKETVERRYFT+TG++ADE+TIENLI+SGESE+FLQKAIQEQGRGQILDTISEIQERHDA+KEIEKNL+ELHQVFLDMAALVE+QG QLNDIESHV+ A+SFVRRGT+QLQ+ARE QK SRKWTCYAI+ Sbjct: 1 MNDLFSSSFKKYTDLKQQAQMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCYAIL 281
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana OX=3702 GN=SYP125 PE=2 SV=1) HSP 1 Score: 421.779 bits (1083), Expect = 6.122e-149 Identity = 221/279 (79.21%), Postives = 246/279 (88.17%), Query Frame = 1 Query: 1 MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYA 837 MNDLFSNSFKK QA D+EAG+E NLD FFEDVENVK +MK VE LYK+LQ++NEE K VHNA+ +KELRA+MD DV VLKRVKIIK KLEALE++NA SRN+PGCGPGSS+DRTR+SVVSGLGKKLKDLMD FQ R +M EYKETVERRYFT+TG+KADE+TI+NLIASGESE+FLQKAIQEQGRGQILDTISEIQERHDA+KEIEKNLLELHQVFLDMAALVEAQG QLN+IESHVA A+SFVRRGT+QLQ+ARE QK SRKWTCYA Sbjct: 1 MNDLFSNSFKK-----NQAQLGDVEAGQETMNLDKFFEDVENVKDDMKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANANSRNVPGCGPGSSTDRTRSSVVSGLGKKLKDLMDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTCYA 274
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana OX=3702 GN=SYP123 PE=2 SV=1) HSP 1 Score: 378.252 bits (970), Expect = 1.456e-131 Identity = 198/282 (70.21%), Postives = 238/282 (84.40%), Query Frame = 1 Query: 1 MNDLFSNSFKKYTDLKTQAYQDDMEA---GRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYA 837 MNDL S+SFK+YTDL Q DD+E+ + NLD FF VE+VK +MK V++++KRLQ+ANEESK VH+++ +K+LRARMD+ V +VLKRVK+IK KL ALE+SNAA R + GCGPGSS+DRTRTSVVSGLGKKLKD+MDDFQ R KM EYKETVERRYFTVTGQKADEET+E LI+SGESE FLQKAIQEQGRGQ++DT+SEIQERHD +KEIE++LLELHQVFLDMAALVEAQG+ LNDIES+V+ A+SFV RGT+QL A+ LQ+ +RKW C A Sbjct: 1 MNDLISSSFKRYTDLNHQVQLDDIESQNVSLDSGNLDEFFGYVESVKEDMKAVDEIHKRLQDANEESKTVHDSKAVKKLRARMDSSVTEVLKRVKMIKTKLVALEKSNAAQRKVAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWACIA 282
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana OX=3702 GN=SYP121 PE=1 SV=1) HSP 1 Score: 314.309 bits (804), Expect = 8.304e-106 Identity = 162/246 (65.85%), Postives = 203/246 (82.52%), Query Frame = 1 Query: 94 NLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTC 831 NLD FFEDVE+VK E+K +++L + L +E+SK +HNA+ +K+LR++MD DV LK+ K+IK KLEAL+R+NAA+R++PGCGPGSSSDRTRTSV++GL KKL D MD F R + EY+ETV+RRYFTVTG+ DE T++ LI++GESE FLQKAIQEQGRG++LDTI+EIQERHDA+K+IEKNL ELHQVFLDMA LVE QG QL+DIESHV A+SF+R GT+QLQ AR QK +RKWTC Sbjct: 43 NLDKFFEDVESVKEELKELDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTC 288
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana OX=3702 GN=SYP122 PE=1 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 4.142e-95 Identity = 162/289 (56.06%), Postives = 208/289 (71.97%), Query Frame = 1 Query: 1 MNDLFSNSFK-KYTDLKTQAYQDDMEAGRER---------DNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYA 837 MNDL S SFK D + + ++E + + +NLD FF DVE V ++K +++L L+ +NE+SK +HNA +KEL+ +MDADV LK + +KG LEAL+R+N +R++P GPGSSSDR RTSVV+GL KKLKD M+ F R + EYKETV R FTVTG+ DE T+E LI++GESE+FLQKAIQEQGRG+ILDTI+EIQERHDA+K+IEK+L ELHQVFLDMA LVE QG QL+DIE +V ANS VR G ++L +AR QK +RKWTC+A Sbjct: 1 MNDLLSGSFKTSVADGSSPPHSHNIEMSKAKVSGGSCHGGNNLDTFFLDVEVVNEDLKELDRLCHNLRSSNEQSKTLHNANAVKELKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNVKRANSLVRSGADRLVKARFYQKNTRKWTCFA 289
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana OX=3702 GN=SYP131 PE=3 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.816e-78 Identity = 135/282 (47.87%), Postives = 189/282 (67.02%), Query Frame = 1 Query: 1 MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDN-----LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTC 831 MNDL S + D ++ + D+E+G N L FF+ V+ ++ + + ++K +LQ A+EE+K V A MK ++ RM+ DV +V + + IKGK+E L+R N +R PGCG G+ DRTRT+ + KK KD + +FQ R +Q EY+E VERR FTVTGQ+ADEE I+ LI +G+SE QKAI+EQGRGQI+DT++EIQERHDA++++EK LL+L QVFLDMA LV+AQG L++IE+ V+ A V+ G QL +A + QK SRKW C Sbjct: 1 MNDLLKGSLEFSRD---RSNRSDIESGHGPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMC 279
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana OX=3702 GN=KN PE=1 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.968e-78 Identity = 135/291 (46.39%), Postives = 190/291 (65.29%), Query Frame = 1 Query: 1 MNDLFSNSFKKYTDLKTQAYQDDMEAGRERD-------------NLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIA-SGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTC 831 MNDL + SF Y DLK A +D MEAG + D NL +F E+ E VKAEM + + R+++ +EESK VH A ++K LR ++ ++ L++ K IK KLE ++++N + + G P S T+ L KKLK++M +FQ R KM EYKETVERRYFTVTG+ A++E IE +I + E FL +AIQE G+G++L+T+ EIQ+R+DA KEIEK+LLELHQVFLDMA +VE+QG Q+++IE HV +A+ +V G +L+ A+ Q+ SRKW C Sbjct: 1 MNDLMTKSFMSYVDLKKAAMKD-MEAGPDFDLEMASTKADKMDENLSSFLEEAEYVKAEMGLISETLARIEQYHEESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEIKRLSGT-PVYRSRTAVTNG---LRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMC 286
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana OX=3702 GN=SYP132 PE=1 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 8.110e-71 Identity = 136/280 (48.57%), Postives = 189/280 (67.50%), Query Frame = 1 Query: 1 MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDN---LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTC 831 MNDL SF+ + + D+E G ++ L++FF+ V+ + + ++KL K+LQ ++EESK V A MK ++ M+ DV +V + IKGKLE L+R N A+R PGC GS DR+RT+ L KKLKD M +FQ R +Q EY++ V+RR +TVTG++ADE+TI+ LI +G SE QKAIQEQGRGQ++DT++EIQERHDA++++EK LL+L Q+FLDMA LV+AQG L++IES V+ A V+ G LQ A+ LQK SRKW C Sbjct: 1 MNDLLKGSFE--LPRGQSSREGDVELGEQQGGDQGLEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTMEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRRVYTVTGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMC 278
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana OX=3702 GN=SYP112 PE=2 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 1.066e-49 Identity = 100/295 (33.90%), Postives = 167/295 (56.61%), Query Frame = 1 Query: 1 MNDLFSNSFKKYTDLKTQAYQD-----DMEAGRE---------RDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAII 843 MNDL + SF Y +LK QA D D+E G + +NL FF+++E +K ++ + L LQ NEE+K H+ + ++ LR RM++++ + ++ +K +E LE+ N A+R G RT + + KKL+D M +F R ++ +Y+E ++R+YF TG++ E +E +I+ S S L K + + + + +ERH+A+ +I+++L LHQVFLDMA LVE QG +++DIE++VA+A SFV GT L A +++K ++ W + I Sbjct: 1 MNDLMTKSFLSYVELKKQARTDMESDRDLEKGEDFNFDFSPADEENLSGFFQEIETIKTLIEEITHLLLDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNVANRTSFKEGSCVDRTRTSITNG--VRKKLRDTMSEFHRLRERIFADYREDLKRKYFLATGEEPSNEDMEKMISGSGSCSDLVKTFEVKPEMDL-----KTKERHEAVNDIKRSLNRLHQVFLDMAVLVETQGDRIDDIEANVANAGSFVSGGTNSLYYANQMKKKTKSWVLWVSI 288
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Match: STX1A_CAEEL (Syntaxin-1A homolog OS=Caenorhabditis elegans OX=6239 GN=unc-64 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.313e-20 Identity = 75/254 (29.53%), Postives = 139/254 (54.72%), Query Frame = 1 Query: 97 LDNFFEDVENVKAEMKTVEKLYKRLQEANEE-SKIVHNARTMKELRARMDADVQQVLKRV-KIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVE---RRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQ-KGSRKWTCYAI 840 ++ FFE VE ++ +V+ + ++E ++ S I+ N ++ + +D ++ V+KR ++GKL+ +E NA + G G ++ R R + S L ++ ++M D+ NK Q +Y+E + +R + G++ +E +E +I SG F Q I + + + T+++I+ RH+ I ++E ++ ELH +F+DMA LVE+QG ++ IE +V HA FV R ++A + Q K RK C + Sbjct: 32 MEEFFEQVEEIRG---SVDIIANNVEEVKKKHSAILSNPVNDQKTKEELD-ELMAVIKRAANKVRGKLKLIE--NAIDHDEQGAG--NADLRIRKTQHSTLSRRFVEVMTDY----NKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQQAK--QTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARRKKICILV 271 The following BLAST results are available for this feature:
BLAST of orange1.1g036284m.v1.1 vs. DB:SwissProt
Analysis Date: 2018-06-08 (C. sinensis v1.1 CDS) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >orange1.1g036284m.v1.1_Csinensis_154_v1.1 ID=orange1.1g036284m.v1.1_Csinensis_154_v1.1; Name=orange1.1g036284m.v1.1; organism=Citrus sinensis; type=mRNA; length=846bpback to top mRNA from alignment at scaffold00010:1677572..1678417+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=846bp; location=Sequence derived from: scaffold00010:1677572..1678417+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at scaffold00010:1677572..1678417+ >orange1.1g036284m.v1.1_Csinensis_154_v1.1 ID=orange1.1g036284m.v1.1_Csinensis_154_v1.1; Name=orange1.1g036284m.v1.1; organism=Citrus sinensis; type=CDS; length=846bp; location=Sequence derived from: scaffold00010:1677572..1678417+ (Citrus sinensisback to top |