Cs6g15890.5, Cs6g15890.5_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis

Transcript Overview


Name	Cs6g15890.5
Unique Name	Cs6g15890.5_Hzau_Valencia_v1.0
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	4469

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis Valencia genome v1.0 (HZAU)	2013-01-22
C. sinensis v2.0, HZAU CDS	2018-06-07
C. sinensis v2.0 peptides	2018-06-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccsiL182	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cmcsiL380	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csifhR525	Fortunella hindsii genome v1.0	Fortunella hindsii
csiptR387	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
clpcsiL397	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clacsiL383	Citrus limon L. Burm f. genome v1.0 - Alternative	Citrus limon
csidvaR333	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csidvbR352	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csiswoR359	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswR406	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis

Orthologs


Gene/Transcript	Assembly	Species
Ptrif.0006s1605.5.v1.3.1	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cs6g_pb010870.1	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
Cs_ont_6g006990.5	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
gene-KPL70_018648-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
gene-KPL71_018827-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cs6g15890	Cs6g15890_Hzau_Valencia_v1.0	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g15890.5	Cs6g15890.5_Hzau_Valencia_v2.0-protein	Citrus sinensis	polypeptide
Cs6g15890.5_Hzau_Valencia_v1.0	Cs6g15890.5_Hzau_Valencia_v1.0	Citrus sinensis	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g15890.5.utr3.1	Cs6g15890.5.utr3.1_Hzau_Valencia_v1.0	Citrus sinensis	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g15890.5.cds.13	Cs6g15890.5.cds.13_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.12	Cs6g15890.5.cds.12_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.11	Cs6g15890.5.cds.11_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.10	Cs6g15890.5.cds.10_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.9	Cs6g15890.5.cds.9_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.8	Cs6g15890.5.cds.8_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.7	Cs6g15890.5.cds.7_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.6	Cs6g15890.5.cds.6_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.5	Cs6g15890.5.cds.5_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.4	Cs6g15890.5.cds.4_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.3	Cs6g15890.5.cds.3_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.2	Cs6g15890.5.cds.2_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g15890.5.cds.1	Cs6g15890.5.cds.1_Hzau_Valencia_v1.0	Citrus sinensis	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g15890.5.exon.14	Cs6g15890.5.exon.14_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.13	Cs6g15890.5.exon.13_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.12	Cs6g15890.5.exon.12_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.11	Cs6g15890.5.exon.11_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.10	Cs6g15890.5.exon.10_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.9	Cs6g15890.5.exon.9_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.8	Cs6g15890.5.exon.8_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.7	Cs6g15890.5.exon.7_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.6	Cs6g15890.5.exon.6_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.5	Cs6g15890.5.exon.5_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.4	Cs6g15890.5.exon.4_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.3	Cs6g15890.5.exon.3_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.2	Cs6g15890.5.exon.2_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g15890.5.exon.1	Cs6g15890.5.exon.1_Hzau_Valencia_v1.0	Citrus sinensis	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g15890.5.utr5.2	Cs6g15890.5.utr5.2_Hzau_Valencia_v1.0	Citrus sinensis	five_prime_UTR
Cs6g15890.5.utr5.1	Cs6g15890.5.utr5.1_Hzau_Valencia_v1.0	Citrus sinensis	five_prime_UTR

Homology

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: SUA_ARATH (SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana OX=3702 GN=SUA PE=1 SV=2)

HSP 1 Score: 600.512 bits (1547), Expect = 0.000e+0
Identity = 381/658 (57.90%), Postives = 459/658 (69.76%), Query Frame = 1

Query:  832 HYAVAPSGTIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTI-PCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGTTLEKNGQILRVAYAKSILGPGXXXXXXXXXXXXXXXXXXXXXXXQQYDAVGWAPKEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDNKTSGNGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPDAVQXXXXXXXXXXXXXXXXXXXXXXXXXXTIVANKKKLNNA-TMWKQWSH------------DNQQSASADDRPGPAGQASKTKFKSDSAATKENNAFSSGAAASTAIPQAVGLDXXXXXXXXXXXXXXXLMGVIRNSGRGFQXXXXXXXXXXXXXXXXXXXXXXXVNSDTITAVTPFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQPQTTYRDRAAERRSLYGSSFSAGDDLPD 2763
            H++  PS T+VVKGLS K+TEEDLYQILAEWGPL HVRVI+E+NSG+SRGFAFIDFP+V AAR MMDRI  DG+V+DGRKL F YS +PTG +G    QE A    +   ++ I P DW+CTICGC+NFARRTSCFQCNE +T D+P A++  SN    GK+ S+TGPTHVLVVRGLDE ADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAF+HF+SVEDA+KALEATN T LE+NG+ILRVAYAKS+ G G+G+SA S S++LAAAAIEAA FSQQYD VGWAPKEYN  +KQ T GQ Q       QK   A QSG+VWDEASGYYYDAASG+YYDGN+GLYYD NSG+WYSYDQQTQQY+PC DQN N++    ++P       S  +KV+IS  AAT  +VEK  SLPDAVQAAA AAIA+EK+ KE+ KE+K+ SK++++A+KKK++N  TMWKQ SH            DN  + SA+ R   +   S  K KSD    KE +  + G +A T    +            SST+GGTLMGV+R S  G                     +    +S     + P    AS          +GSG+RRFSE P    T +EQPQT+YRDRAAERR+LYGSS S+G+D+ D
Sbjct:  265 HFSATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGRKLMFHYS-QPTGRAGVSRRQEHASRRSYGGSRNMIVPTDWICTICGCINFARRTSCFQCNEPKTKDSPSADVGLSNSA-AGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAKSVHGSGTGISAPSHSNNLAAAAIEAATFSQQYDGVGWAPKEYNTGEKQNTGGQAQGVGEIESQKGTSAPQSGYVWDEASGYYYDAASGYYYDGNSGLYYDSNSGLWYSYDQQTQQYVPCPDQN-NESKVTENQPDSAKKEKSSQQKVIIS--AATTPNVEKVLSLPDAVQAAAAAAIASEKREKERVKEIKLASKTSLLASKKKMSNVLTMWKQRSHETQIQRPSPSLGDNPPTVSAEARSSFSTGQSMGKLKSDVIIAKERSTSNHGVSALTTAESSS-----------SSTTGGTLMGVMRGSFGG---------------------TLGGASSSASVQMPPILPSASPASV----SVSGSGRRRFSETPTAGPTHREQPQTSYRDRAAERRNLYGSSTSSGNDVID 881

HSP 2 Score: 121.709 bits (304), Expect = 9.607e-27
Identity = 100/203 (49.26%), Postives = 124/203 (61.08%), Query Frame = 1

Query:    1 MDPGRYGLQQGWDNNSALEGYGAIHEPNFRVGGSYDERRFLDERYSRDNIYPRNAFQRENYPP--PPVGLWPQSRRRNYEEDYSLDRESRRHEKPYIDSYHEMDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFGGXXXXXXXXXXXXXXXXHQSREDSREGDCDFGRLXXXXXXXXXXXXXXXXXXHESRDRERD 603
            MDP RYG QQ WDNNSA EGYG  H+PN R G SYD+  + DER  RD++Y        NYPP    +G  PQSR+RNYEE+Y    E RR EKPYIDS +  D Y   E  S       R+G+     YRDH  ER  R+ G D    +D +YRS++ H SR+D RE D D+ R SYDS+Y+R S RDGS +  + +DRER+
Sbjct:    1 MDPSRYGRQQEWDNNSAPEGYGTQHDPNHRFGVSYDD-GYPDERLMRDDVY--------NYPPGHNTLGDLPQSRKRNYEENYP--SELRRQEKPYIDSNYAADYYHDSEAGS-------RNGH-----YRDHEHERSSRYDGCDDYSCNDNNYRSKNYHHSRDDGREKDYDYTRRSYDSEYERASVRDGSRKSRDPQDRERN 180

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM5B_XENLA (RNA-binding protein 5-B OS=Xenopus laevis OX=8355 GN=rbm5-b PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.337e-18
Identity = 73/253 (28.85%), Postives = 121/253 (47.83%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG-PTHVLVVRGLDEYADEEMLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA--TNGTTLEKNGQILRVAYAKS 1578
            S TI+++GL     E D+ +++  + GP    VR++K R +G+SRGFAF++F  +  A   M+      LV+ G+ +   YS                      N +     DW+C  CG  NF RR  CF+C  A+ +    A   SS         SD+G  +  +++R +  +   + +    S  AP     + ++RL++DK T  +RGFAF+   S  +AS+ L+   T    L+ +G+ + V +AKS
Sbjct:  101 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDATRWME-ANQKKLVIQGKTIAMHYS----------------------NPRPKFE-DWLCNKCGLYNFRRRLKCFRCGAAKAESDMEAPSGSSETPQSADYYSDSGYVSSAIILRNIGPHTVVDSI---LSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSALEASQLLQILQTLHPPLKIDGKTIGVDFAKS 325

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM5A_XENLA (RNA-binding protein 5-A OS=Xenopus laevis OX=8355 GN=rbm5-a PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.456e-18
Identity = 72/253 (28.46%), Postives = 122/253 (48.22%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG-PTHVLVVRGLDEYADEEMLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA--TNGTTLEKNGQILRVAYAKS 1578
            S TI+++GL     E D+ +++  + GP    VR++K R +G+SRGFAF++F  +  + + M+      LV+ G+ +   YS                      N +     DW+C  CG  NF RR  CF+C  A+ +    A   SS         SD+G  +  +++R +  +   + +    S  AP     + ++RL++DK T  +RGFAF+   S  +AS+ L+   T    L+ +G+ + V +AKS
Sbjct:  101 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDSTSWME-ANQKKLVIQGKTIAMHYS----------------------NPRPKFE-DWLCNKCGLYNFRRRLKCFRCGAAKAESDMEAPSGSSEAPQSADYYSDSGYVSSAIILRNIGPHTVVDSI---LSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSALEASQLLQILQTLHPPLKIDGKTIGVDFAKS 325

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM5_XENTR (RNA-binding protein 5 OS=Xenopus tropicalis OX=8364 GN=rbm5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.113e-18
Identity = 73/253 (28.85%), Postives = 122/253 (48.22%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTG-PTHVLVVRGLDEYADEEMLRYEFSKHAP-----IKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEA--TNGTTLEKNGQILRVAYAKS 1578
            S TI+++GL     E D+ +++  + GP    VR++K R +G+SRGFAF++F  +  A   M+      LV+ G+ +   YS                      N +     DW+C  CG  NF RR  CF+C  A+ +    A   SS+        SD+G  +  +++R +  +   + +    S  AP     + ++RL++DK T  +RGFAF+   S  +AS+ L+   T    L+ +G+ + V +AKS
Sbjct:  102 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMK-RKTGLSRGFAFVEFYHLQDATRWME-ANQKKLVIQGKTIAMHYS----------------------NPRPKFE-DWLCNKCGLYNFRRRLKCFRCGAAKAESDLEAPSGSSDAPQSTDYYSDSGYVSSAIILRNIGPHTVVDSI---LSALAPYVSLVVSNIRLIKDKQTQQNRGFAFVQLPSTLEASQLLQILQTLHPPLKIDGKTVGVDFAKS 326

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM5_MOUSE (RNA-binding protein 5 OS=Mus musculus OX=10090 GN=Rbm5 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.583e-18
Identity = 69/252 (27.38%), Postives = 118/252 (46.83%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 1578
            S TI+++GL    TE D+ +++  + GP    VR++K R +GVSRGFAF++F  +  A + M+      LV+ G+ +   YS                      N +     DW+C  C   NF +R  CF+C   + D   + PP    S+  +              +++R +  +   + +    S +A   + ++RL++DK T  +RGFAF+   S  DAS+ L+        L+ +G+ + V +AKS
Sbjct:   97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATSWME-ANQKKLVIQGKHIAMHYS----------------------NPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESAQSVDYY--------CDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM5_RAT (RNA-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Rbm5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.031e-18
Identity = 71/252 (28.17%), Postives = 119/252 (47.22%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 1578
            S TI+++GL    TE D+ +++  + GP    VR++K R +GVSRGFAF++F  +  A + M+      LV+ G+ +   YS                      N +     DW+C  C   NF +R  CF+C   + D   + PP    S   +       DT     +++R +  +   + +    S +A   + ++RL++DK T  +RGFAF+   S  DAS+ L+        L+ +G+ + V +AKS
Sbjct:   97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATSWME-ANQKKLVIQGKHIAMHYS----------------------NPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQSVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM5_HUMAN (RNA-binding protein 5 OS=Homo sapiens OX=9606 GN=RBM5 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.189e-17
Identity = 71/252 (28.17%), Postives = 119/252 (47.22%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 1578
            S TI+++GL    TE D+ +++  + GP    VR++K R +GVSRGFAF++F  +  A + M+      LV+ G+ +   YS                      N +     DW+C  C   NF +R  CF+C   + D   + PP    S   +       DT     +++R +  +   + +    S +A   + ++RL++DK T  +RGFAF+   S  DAS+ L+        L+ +G+ + V +AKS
Sbjct:   97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATSWME-ANQKKLVIQGKHIAMHYS----------------------NPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQSVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM5_BOVIN (RNA-binding protein 5 OS=Bos taurus OX=9913 GN=RBM5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.411e-17
Identity = 71/252 (28.17%), Postives = 119/252 (47.22%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEW-GPL-RHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSNPIPLGKKGSDTGPTHVLVVRGLDEYADEEMLRYEFSKHA--PIKDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAKS 1578
            S TI+++GL    TE D+ +++  + GP    VR++K R +GVSRGFAF++F  +  A + M+      LV+ G+ +   YS                      N +     DW+C  C   NF +R  CF+C   + D   + PP    S   +       DT     +++R +  +   + +    S +A   + ++RL++DK T  +RGFAF+   S  DAS+ L+        L+ +G+ + V +AKS
Sbjct:   97 SKTIMLRGLPITITESDIREMMESFEGPQPADVRLMK-RKTGVSRGFAFVEFYHLQDATSWME-ANQKKLVIQGKHIAMHYS----------------------NPRPKFE-DWLCNKCCLNNFRKRLKCFRCGADKFDSEQEVPPGTTESVQSVDYY---CDT-----IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 315

[Close]

BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM10_MOUSE (RNA-binding protein 10 OS=Mus musculus OX=10090 GN=Rbm10 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.164e-17
Identity = 66/279 (23.66%), Postives = 123/279 (44.09%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSNPIPLG--------------------------KKGSDTGPTH---VLVVRGLDEYADEEMLRYEFSKHAPI--KDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAK 1575
            S  ++++ L Q  TE+D+   L   G   R VR+++ ++SG SRGFAF++F  +  A   M+      L + G+K+   YS                      + K  I  DW+C  CG  NF RR  CF+C   +++     P         +PLG                           +GS+    +    +++R L+ ++  + +    + +A +   ++R+++DK T ++RGFAF+   ++ +A++ L+        L  +G+ + V +AK
Sbjct:  128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME-ANQHSLNILGQKVSMHYS----------------------DPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQALPLGGRELSQGLLPLPQPYQAQGVLTSQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 383

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BLAST of Cs6g15890.5 vs. DB:SwissProt
Match: RBM10_HUMAN (RNA-binding protein 10 OS=Homo sapiens OX=9606 GN=RBM10 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 3.628e-17
Identity = 66/279 (23.66%), Postives = 123/279 (44.09%), Query Frame = 1

Query:  850 SGTIVVKGLSQKTTEEDLYQILAEWG-PLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDGLVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTICGCVNFARRTSCFQCNEARTD---DAPPAEMNSSNPIPLG--------------------------KKGSDTGPTH---VLVVRGLDEYADEEMLRYEFSKHAPI--KDLRLVRDKFTHVSRGFAFLHFHSVEDASKALEATNGT--TLEKNGQILRVAYAK 1575
            S  ++++ L Q  TE+D+   L   G   R VR+++ ++SG SRGFAF++F  +  A   M+      L + G+K+   YS                      + K  I  DW+C  CG  NF RR  CF+C   +++     P         +PLG                           +GS+    +    +++R L+ ++  + +    + +A +   ++R+++DK T ++RGFAF+   ++ +A++ L+        L  +G+ + V +AK
Sbjct:  128 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME-ANQHSLNILGQKVSMHYS----------------------DPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAK 383

The following BLAST results are available for this feature:

BLAST of Cs6g15890.5 vs. DB:SwissProt

BLAST of Cs6g15890.5 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
SUA_ARATH	9.607e-27	57.90	SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana OX=37...	[more]
RBM5B_XENLA	1.337e-18	28.85	RNA-binding protein 5-B OS=Xenopus laevis OX=8355 ...	[more]
RBM5A_XENLA	2.456e-18	28.46	RNA-binding protein 5-A OS=Xenopus laevis OX=8355 ...	[more]
RBM5_XENTR	3.113e-18	28.85	RNA-binding protein 5 OS=Xenopus tropicalis OX=836...	[more]
RBM5_MOUSE	5.583e-18	27.38	RNA-binding protein 5 OS=Mus musculus OX=10090 GN=...	[more]
RBM5_RAT	9.031e-18	28.17	RNA-binding protein 5 OS=Rattus norvegicus OX=1011...	[more]
RBM5_HUMAN	1.189e-17	28.17	RNA-binding protein 5 OS=Homo sapiens OX=9606 GN=R...	[more]
RBM5_BOVIN	1.411e-17	28.17	RNA-binding protein 5 OS=Bos taurus OX=9913 GN=RBM...	[more]
RBM10_MOUSE	3.164e-17	23.66	RNA-binding protein 10 OS=Mus musculus OX=10090 GN...	[more]
RBM10_HUMAN	3.628e-17	23.66	RNA-binding protein 10 OS=Homo sapiens OX=9606 GN=...	[more]

InterPro

Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 286..361 e-value: 8.2E-19 score: 78.5 coord: 447..522 e-value: 2.1E-21 score: 87.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 448..514 e-value: 2.6E-16 score: 59.1 coord: 287..345 e-value: 4.9E-12 score: 45.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 285..365 score: 15.903
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 446..526 score: 17.012
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 428..554 e-value: 4.6E-23 score: 83.4 coord: 264..381 e-value: 2.8E-19 score: 71.2
None	No IPR available	GENE3D	4.10.1060.10		coord: 384..422 e-value: 1.2E-7 score: 32.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 644..670
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 563..587
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..441
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 740..931
None	No IPR available	PANTHER	PTHR13948:SF3	SUPPRESSOR OF ABI3-5	coord: 123..910
None	No IPR available	PANTHER	PTHR13948:SF3	SUPPRESSOR OF ABI3-5	coord: 31..91
None	No IPR available	PANTHER	PTHR13948	RNA-BINDING PROTEIN	coord: 123..910
None	No IPR available	PANTHER	PTHR13948	RNA-BINDING PROTEIN	coord: 31..91
None	No IPR available	CDD	cd12313	RRM1_RRM2_RBM5_like	coord: 444..524 e-value: 4.00745E-29 score: 108.796
None	No IPR available	CDD	cd12313	RRM1_RRM2_RBM5_like	coord: 283..363 e-value: 7.99969E-28 score: 105.329
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 395..414
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 388..420 score: 9.1
IPR035623	SUA-like, OCRE domain	CDD	cd16166	OCRE_SUA_like	coord: 595..644 e-value: 7.37659E-24 score: 93.1301
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 279..363 coord: 198..251
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 426..527
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 389..421

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
protein sequence
mRNA from alignment at chr6:16872160..16879846-
coding sequence from alignment at chr6:16872160..16879846-

mRNA sequence

>Cs6g15890.5_Hzau_Valencia_v1.0 ID=Cs6g15890.5_Hzau_Valencia_v1.0; Name=Cs6g15890.5; organism=Citrus sinensis; type=mRNA; length=4469bp
AATTAAAATTGGGCACTTCTGTCCGAGAGAAAAAGATAAAAATAAAATAA
AATAACCCTAACGAAACGACCAAGCGAGGAAGAAGTAGAAAGACCCGCAA
TTCCACATCATCCCCTGGAAGTGATTTTAAATACTCCACTTGTGAAACTT
CTGAACGATCATCAAGAAGCCTTTGCAGGGGTTTACTGCTGAGACTTGCA
AGAAATGGATCCTGGTCGCTATGGCCTTCAGCAAGGATGGGATAATAACA
GCGCTCTGGAGGGGTATGGTGCTATCCATGAACCAAATTTCCGGGTTGGT
GGTTCATACGATGAGAGGAGGTTTTTAGATGAAAGGTACTCAAGAGACAA
CATATACCCAAGAAATGCCTTCCAGAGGGAGAACTATCCACCGCCACCTG
TTGGTCTTTGGCCTCAATCAAGAAGGAGAAATTATGAAGAAGATTATTCA
CTTGATAGGGAATCCAGGCGACATGAGAAACCTTACATTGATTCATACCA
TGAGATGGATGCTTATTGTGGCCACGAGATTGATTCTTTTCCGGAATTTG
ATAAGTTCCGTGATGGCTATCGCAATATAGAAAATTATCGTGATCATGGT
TTTGAAAGGCCTCCCAGGTTTGGGGGCCGTGACCGTGATGATTATGATGA
TTATGACTATAGATCCCGTTCTTCCCATCAAAGTAGGGAGGATAGCCGAG
AGGGGGATTGTGATTTTGGTCGTCTTAGCTATGATTCTGATTATGACAGA
GGCAGCCGAAGAGATGGTAGTTGGAGGAGACATGAATCCCGTGATAGAGA
ACGTGATAAGAGATGTTTGAGTCGGGAAAGAGAGTTGAGTCCACGTAGAA
GGCATGAGCACTCTGCATCCCGATCTCAGTCTCGATCTAGGTCTCGTGGA
CGTGATGATCGTCCTAGATCGCGGTCACCTCGTGGTCGAAGCCATGGTAG
AAGTCATCGAGAGGACAGCTATGATGATGGTCGATATGAGCGAATTGAGA
AGCGAAGGGACCGTGAAGAGAGGCGTCAGCGGGAGCACTATGCTGTGGCC
CCATCAGGCACTATTGTTGTGAAGGGTCTTTCTCAAAAGACGACTGAAGA
AGATTTATACCAGATCCTTGCTGAGTGGGGACCTCTTCGCCATGTTCGTG
TGATCAAAGAGCGAAATTCCGGCGTCTCACGTGGATTTGCCTTCATTGAT
TTTCCTTCTGTGGGAGCAGCACGTGCAATGATGGATAGGATTGGGGATGA
TGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAGTACAGTAGCAAGC
CAACTGGGGGTTCAGGTGGGCATTATGGTCAAGAAAGTGCTATGGGAGCT
AGGCATTCTAACCATAAAAGCACAATACCATGTGATTGGATGTGCACCAT
TTGTGGCTGTGTGAATTTTGCTCGGCGTACGTCTTGCTTTCAGTGCAATG
AGGCAAGAACTGATGATGCTCCCCCAGCAGAAATGAATTCATCCAATCCA
ATACCTCTGGGGAAGAAAGGATCGGACACAGGTCCCACTCATGTTCTGGT
TGTTCGTGGATTGGATGAGTACGCTGATGAAGAAATGCTTCGTTATGAAT
TTTCTAAACACGCTCCAATTAAGGATCTTCGCCTTGTCAGAGACAAGTTC
ACTCATGTATCTAGGGGATTTGCATTCTTACATTTCCATTCGGTTGAGGA
TGCTTCTAAAGCTCTAGAAGCAACAAATGGAACAACTCTGGAGAAGAATG
GGCAGATACTAAGAGTAGCTTATGCAAAAAGCATTCTTGGTCCAGGATCA
GGGATGTCAGCATCTTCACAGTCAAGTAGTCTTGCTGCTGCGGCAATTGA
GGCAGCAGCATTTTCCCAGCAGTATGATGCTGTTGGATGGGCACCAAAAG
AATATAATCCAGATGACAAGCAGCCTACTCGCGGCCAGGAGCAACGCAGT
GACGGAGATATGGTTCAAAAGGATGGTTTGGCTTTGCAATCCGGCTTTGT
ATGGGATGAAGCATCTGGCTATTACTATGATGCTGCTTCTGGGTTCTACT
ATGACGGAAATACTGGTCTTTATTATGATGGTAACAGTGGGATTTGGTAT
TCCTATGACCAACAAACGCAGCAATATATTCCTTGTACTGATCAAAATGA
CAACAAAACATCTGGTAACGGATCTGAGCCTTCCAAGCAAGTGGATGGTG
GTTCCAAAAACAGGAAAGTGGTAATCTCTGCACCGGCTGCAACTGTTTCA
TCAGTGGAGAAGCCTGCATCACTACCAGATGCTGTACAGGCTGCTGCAAC
AGCAGCAATAGCTGCGGAAAAGAAAGGGAAGGAGAAGTCAAAAGAGGTGA
AAGTCGTTTCAAAGAGCACTATAGTGGCTAACAAAAAGAAGTTAAATAAT
GCAACAATGTGGAAACAGTGGAGTCATGATAATCAACAATCCGCTTCAGC
TGATGATAGACCTGGTCCAGCTGGTCAAGCCTCAAAGACCAAGTTCAAAT
CTGATTCGGCTGCTACAAAAGAGAACAATGCGTTTAGTTCCGGAGCTGCC
GCATCTACGGCAATTCCCCAGGCTGTTGGTTTGGATTCTCCAGTCAAGTC
AAAGCCTGTGAGTAGCACCTCAGGAGGAACTTTGATGGGGGTCATAAGGA
ACTCTGGAAGGGGTTTTCAGCCAGGATCATCTGGTGGTCTTTCTGCCTCT
TCAACTGCTCCGCCATCAAGTGCGGGATCATCTTCATCAGTGAATTCTGA
TACAATTACAGCTGTGACTCCCTTCAGAACTGATGCATCGGCTCTAGGTT
CTTATACCCCACCCGTGGCAACTGGGAGTGGTAAGAGAAGGTTTTCTGAA
ATGCCACTACCTCCTGCCACTCAAAAGGAACAACCTCAGACTACCTATAG
GGATCGTGCAGCTGAGAGGAGGAGCTTGTATGGTTCATCATTTTCCGCTG
GAGATGATCTGCCTGATGTTGGATCCGGAGATTCAAGTAAGATTCCTTAG
CAATTGCTTTTGGGTGGCATGTTCCTTGATGCCGAATTAAGAACTCATAA
TACATGATGGACCCTTACAGTCGGTACATTTTACATTCAACTTCATTATT
AGGTTTGTTAGTCTGTTAGATAATGGTTCTTTGTAAGTCTTTTAGTTATC
CAACTTGATGGCTCCGGTCTATGCTTTATCTCTCAGTATTTATATTGACT
TGTGAGAAATTGTCTCTGCTATCTTCTTTTGGTGAATTTTCAAGATCGAG
ATTTTGCTTTAAAAAAGGGTTCTGTGGATTCAATGCCTTTTCCCCCTGGT
GTTGGAGGACGCGGGTTTACTGCCGATAGTGTTCAAAGTTATGAGGTGAT
TACAGCCGACAAAGCCATTGATGAGAACAATGTGGGGAATCGAATGCTAC
GGAGCATGGGCTGGCATGAAGGCTTGGTATCATCTCTATCTTTTGCACTT
GAATGATAATAAATAAATCATCATCCTTTATTTAGTGTATGTGGGATTTT
GGTGTGTTGGTGAATACTTATTTGGTAATCTACACCCAAATTATATTTGA
TAATCACTTATTTGTGGTGACTGTCAGTGTTAGGTCCAAAAGAACAACTC
CAGTAGGCTATGTTTGGTAAAAATAATTTGACGACTCAAAAATTGTTTGG
GGTTAGATTGTCAAATAATGTGATTATTTGAGAATCCACAATCCCAAACA
TGCACTAAATACATTTTGTGTGGTTGGCTTTGCATGTTAATGTCATTTTA
TTACAGGACGTAGTATTTTACTTGTTTATGACCCTTCTTTTTACATTGAA
AGTTGAATGGCATATCAGTAATCAGTTGGCAATTTGTTAAAGCAAAAATC
ATGAAATTCTAACAATTGATTGTTGTGGTGGTATTTTTCTGGCCTTGGAT
TTTGATATGATGCCATAGGGATTAGGCAAGGATGGAAGTGGAATGATAGA
ACCGGTCCAAGCACAGGCCATGGACAGCAGAGCAGGACTGGGGAGTCAGC
AGAAGAAGGTGGATCCTAGTCTTGAGGTGCAGGCAGGTGATAGTTACAAG
ACACTCATTCATAAGAAGGCTCTTGCTAGGTTCCGTGAGATGTCGTAGGA
AGCTTCTTGCTTCCATTTACAAGTCATGTGATGTGAACGGTGAGCAGACT
TTGTGAATGTTTCCTTTGTAGAAATTAGCTTCGTTTTTATAGAAATTTGA
TTATTTAATTTAAAGTATGTGTGATAGCATTCCTTCTCCCGGAAATGACC
AGTCATATTTTTGAAAAACAAAACAAATGCCATGGAACACAGCTTACTTT
GTGATATGATGGTTTCAATGCTTCATCAAGGGTGTAGACATAAATCAAAG
GATATGTTAATTATTTCAATATGAAACCGCCCGTTATTTAGGAGGTAGTT
TCTGAAAAGGGGATCTCAACTAAGGACAAGATGGCTTTATAATGTTCACA
TTTACAAATTACTGTACTT

protein sequence of Cs6g15890.5

>Cs6g15890.5_Hzau_Valencia_v2.0-protein ID=Cs6g15890.5_Hzau_Valencia_v2.0-protein; Name=Cs6g15890.5; organism=Citrus sinensis; type=polypeptide; length=932bp
MDPGRYGLQQGWDNNSALEGYGAIHEPNFRVGGSYDERRFLDERYSRDNI
YPRNAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEKPYIDSYHE
MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFGGRDRDDYDDY
DYRSRSSHQSREDSREGDCDFGRLSYDSDYDRGSRRDGSWRRHESRDRER
DKRCLSRERELSPRRRHEHSASRSQSRSRSRGRDDRPRSRSPRGRSHGRS
HREDSYDDGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEED
LYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG
LVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTIC
GCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVV
RGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDA
SKALEATNGTTLEKNGQILRVAYAKSILGPGSGMSASSQSSSLAAAAIEA
AAFSQQYDAVGWAPKEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSGFVW
DEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDN
KTSGNGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPDAVQAAATA
AIAAEKKGKEKSKEVKVVSKSTIVANKKKLNNATMWKQWSHDNQQSASAD
DRPGPAGQASKTKFKSDSAATKENNAFSSGAAASTAIPQAVGLDSPVKSK
PVSSTSGGTLMGVIRNSGRGFQPGSSGGLSASSTAPPSSAGSSSSVNSDT
ITAVTPFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQPQTTYRD
RAAERRSLYGSSFSAGDDLPDVGSGDSSKIP*

protein sequence of Cs6g15890.5_Hzau_Valencia_v1.0

>Cs6g15890.5_Hzau_Valencia_v1.0 ID=Cs6g15890.5_Hzau_Valencia_v1.0; Name=Cs6g15890.5_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=932bp
MDPGRYGLQQGWDNNSALEGYGAIHEPNFRVGGSYDERRFLDERYSRDNI
YPRNAFQRENYPPPPVGLWPQSRRRNYEEDYSLDRESRRHEKPYIDSYHE
MDAYCGHEIDSFPEFDKFRDGYRNIENYRDHGFERPPRFGGRDRDDYDDY
DYRSRSSHQSREDSREGDCDFGRLSYDSDYDRGSRRDGSWRRHESRDRER
DKRCLSRERELSPRRRHEHSASRSQSRSRSRGRDDRPRSRSPRGRSHGRS
HREDSYDDGRYERIEKRRDREERRQREHYAVAPSGTIVVKGLSQKTTEED
LYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAARAMMDRIGDDG
LVVDGRKLFFEYSSKPTGGSGGHYGQESAMGARHSNHKSTIPCDWMCTIC
GCVNFARRTSCFQCNEARTDDAPPAEMNSSNPIPLGKKGSDTGPTHVLVV
RGLDEYADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDA
SKALEATNGTTLEKNGQILRVAYAKSILGPGSGMSASSQSSSLAAAAIEA
AAFSQQYDAVGWAPKEYNPDDKQPTRGQEQRSDGDMVQKDGLALQSGFVW
DEASGYYYDAASGFYYDGNTGLYYDGNSGIWYSYDQQTQQYIPCTDQNDN
KTSGNGSEPSKQVDGGSKNRKVVISAPAATVSSVEKPASLPDAVQAAATA
AIAAEKKGKEKSKEVKVVSKSTIVANKKKLNNATMWKQWSHDNQQSASAD
DRPGPAGQASKTKFKSDSAATKENNAFSSGAAASTAIPQAVGLDSPVKSK
PVSSTSGGTLMGVIRNSGRGFQPGSSGGLSASSTAPPSSAGSSSSVNSDT
ITAVTPFRTDASALGSYTPPVATGSGKRRFSEMPLPPATQKEQPQTTYRD
RAAERRSLYGSSFSAGDDLPDVGSGDSSKIP*

mRNA from alignment at chr6:16872160..16879846-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=7687bp; location=Sequence derived from: chr6:16872160..16879846- (Citrus sinensis
AATTAAAATTGGGCACTTCTGTCCGAGAGAAAAAGATAAAAATAAAATAA
AATAACCCTAACGAAACGACCAAGCGAGGAAGAAGTAGAAAGACCCGCAA
TTCCACATCATCCCCTGGTACGTCGACGACTCCTTTTCACCTGAATCGCC
AATTTAGGGTTTTAATTGATTTCTGATTATCTAAGTGCATGATATTATTA
TTGTTTCTGTGAAAAGCTTGTGATTTTATTATTAGCTGATGGTTTGGTTG
CTACTATACATGTATCAAGATCCTCTGCTGTGTTTTGTTTTAAGAGAGAT
TGGAAGATGGGTTGTTTCTGAGTTTGTGGAAAAGGATTCAAAGTTGTTAA
AAAAAAAAAAAAAAGAACGCCAAGGTCAAGTCGTGGGATTATTGCTACTT
GGTTCATCACGGGCATAACTGTCTCTGTTTGTGCATATATTTACAGGAAG
TGATTTTAAATACTCCACTTGTGAAACTTCTGAACGATCATCAAGAAGCC
TTTGCAGGGGTTTACTGCTGAGACTTGCAAGAAATGGATCCTGGTCGCTA
TGGCCTTCAGCAAGGATGGGATAATAACAGCGTAATTGTGGTTTCCTCCT
TAATAATCACCTATGTGGGATGATAATACCAGAAAAATTTTAGGGCTCAT
GTGATGTGATTGTCCATTTTTTTTTGGTCATCTCATCCTTAAAGAATAAT
GAGAGAGAGCCGTGGGGCAGTGAGGATATGGACTGGATTTCCCTAACCTC
CTATCATGATTGTTTTTGTTGCTGACATTACTTATTCTCTTGAATCCACA
GGCTCTGGAGGGGTATGGTGCTATCCATGAACCAAATTTCCGGTGAGTTC
TGAATGAAGCTTATCATCATCAAAAAGCTTTTTTAGAGCTCATGGGTAAA
AGAGTTTCCTTTGGGAGTTTTTGTATGGTTATTAGTGTATATCTTTTATG
CATGATGTATCATTAATGCTTACTGAATATTTTCTTTATAATTGTGCTAA
TTTTTTGGTTATCATGTGTTTGGTGTGCGTAATATTGCATTTTGCCTTTT
TTTCTTCTATCCCATCATATGTCATCTTGGCAGGGTTGGTGGTTCATACG
ATGAGAGGAGGTTTTTAGATGAAAGGTACTCAAGAGACAACATATACCCA
AGAAATGCCTTCCAGAGGGAGAACTATCCACCGCCACCTGTTGGTCTTTG
GCCTCAATCAAGAAGGAGAAATTATGAAGAAGATTATTCACTTGATAGGG
AATCCAGGCGACATGAGAAACCTTACATTGATTCATACCATGAGATGGAT
GCTTATTGTGGCCACGAGATTGATTCTTTTCCGGAATTTGATAAGTTCCG
TGATGGCTATCGCAATATAGAAAATTATCGTGATCATGGTTTTGAAAGGC
CTCCCAGGTTTGGGGGCCGTGACCGTGATGATTATGATGATTATGACTAT
AGATCCCGTTCTTCCCATCAAAGTAGGGAGGATAGCCGAGAGGGGGATTG
TGATTTTGGTCGTCTTAGCTATGATTCTGATTATGACAGAGGCAGCCGAA
GAGATGGTAGTTGGAGGAGACATGAATCCCGTGATAGAGAACGTGATAAG
AGATGTTTGAGTCGGGAAAGAGAGTTGAGTCCACGTAGAAGGCATGAGCA
CTCTGCATCCCGATCTCAGTCTCGATCTAGGTCTCGTGGACGTGATGATC
GTCCTAGATCGCGGTCACCTCGTGGTCGAAGCCATGGTAGAAGTCATCGA
GAGGACAGCTATGATGATGGTCGATATGAGCGAATTGAGAAGCGAAGGGA
CCGTGAAGAGAGGCGTCAGCGGGAGCACTATGCTGTGGTATAGTTTTGAT
GTGTAATCTTGCTTATTTTCTGGAGTTTATGATTGTTATAGATGATAGCC
AGAGCTCTTTGTAAGTATTCTGTTTGCTTGCAGGCCCCATCAGGCACTAT
TGTTGTGAAGGGTCTTTCTCAAAAGACGACTGAAGAAGATTTATACCAGA
TCCTTGTATTTTTACTATCCCTTCTTGTTTTGACTTCTCTCTATCTTTAA
TTCTAGTTATCTTAGCACATTTACTCTTCTCTTTTAATTTATTCAGGCTG
AGTGGGGACCTCTTCGCCATGTTCGTGTGATCAAAGAGCGAAATTCCGGC
GTCTCACGTGGATTTGCCTTCATTGATTTTCCTTCTGTGGTACTCCTTCC
TTCTTCTTGGGTAAATTTGACAATATTTTGTTTCAATTTTGACGAATTGA
CTACAAGAGAGGCAATTGTTGTGGAACAGGGAGCAGCACGTGCAATGATG
GATAGGATTGGGGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTT
TGAGTACAGGTTTTTTTTTTTTTGGTGTTTGGGTCAGCCAACCATATTGG
TGTGTGTCACTTCAACTCGTTAGACTTCCATGTTGCTAGTTCCACATTAA
GATCTCGATAGATCTTGTAACATCATCATATGAAAATGTGGTTTCGTGCT
ATGTGTGAAATTCGGACAAACATTAACTTCTTTTTCAGCCATAAAAAATT
TGCACCATCAGTTTTGTCTTTTAGTGCTCTAATAATGCTTATTTCCCATA
TGCCAATGCAATGATGTGTAACTTTATGCTAAGCATAAATCTTGCCGATT
TGAATCGTGTTATACTGCAGTAGCAAGCCAACTGGGGGTTCAGGTGGGCA
TTATGGTCAAGAAAGTGCTATGGGAGCTAGGCATTCTAACCATAAAAGCA
CAATACCATGTGATTGGATGTGCACCATTTGTGGCTGTGTGAATTTTGCT
CGGCGTACGTCTTGCTTTCAGGTTTGTTTTCTGTTCTTTTCTGTGACCTG
TTTACTGCTGCTGCTTTTCTTTAGATGGTTTAGGAGCATGGTATTTTTTA
ATTAACCTCTGCATGTAATGGTGAGAATTGTGAGCACGTAACACTGCTTG
GTGATCGGGTATCAAATGAATTATATGTTCTGTGTGTCTTGTTGAGGGCT
AATGAAACTTAACAACGTTAGTTTGACAATTTTTTAAAGTATTTGTATAA
GATCCATTTTCCCTTTGATGCAGTGCAATGAGGCAAGAACTGATGATGCT
CCCCCAGCAGAAATGAATTCATCCAATCCAATACCTCTGGGGAAGAAAGG
ATCGGACACAGGTTGGTCTAATACGTTACTTTTAGAAGAATAATTCCATG
CATTTGCTGCAAATTACTAAGTTGATATGTAAGCAGGTCCCACTCATGTT
CTGGTTGTTCGTGGATTGGATGAGTACGCTGATGAAGAAATGCTTCGTTA
TGAATTTTCTAAACACGCTCCAATTAAGGTAACACTTAAAGTGATCAAAT
ATGATTTCAGTTTCTTTTCCATCTAGCATGAGCAGTGATGTTATTGGTTT
GACATGCAGGATCTTCGCCTTGTCAGAGACAAGTTCACTCATGTATCTAG
GGGATTTGCATTCTTACATTTCCATTCGGTATGTCCATCATTAGCTGGTA
ACTGGTTTATATATTCCTTTTTGTCTCCTGTATTCCATGCTAAGGTTGGT
TCGGGTAAAAGTTACATGATAAATGTAACTTATACCCTTCCAAGAAAATT
GTGAGGAACTTGTGGTTTTGAAGCTGTCAATACTATTTGTCTTTATGGGT
GCATGGTATGTGACTAAGAATTTATTTTATTTTGGGCAGTGTATTCTTCA
AAAACTTCTATCACTATTTTATTAATTCTGAATTTTGATGGTATGAGATA
ATTCTATGGGAATAGAAGCAAAGAATATCAAGGGTTCTAAAATTTACCTC
CAATAATGCAACAACCAAACCATAAACAAAATATACATAATTTTGGTTTG
AATTCTTTTGAAAATTTTCCTGTTATTCATGCTCAGTATTTCCAAGGAAT
TTCTTTAGGTGGCAACTCTTTGTACCATGATCTATTTGATAAAATTAATC
ATGTTTATTTAAATAGGAGGATAATGATGACAACATATCATCCCTGATTG
AAATGGATCCCAGAACCAATGGGACTTGTCTTATCATTGTCTTCTGCTCA
TTGACATTGAGAATCTAAAAAGATTATAATTCTGATTAGATGTGATCATG
AGGATTTAGTTTGTGGGCGCAATGTTAATTAAAGTTTAGATTGACCCAAT
TATGGCAGATTACTCTGTAATTTTTGGTAAAAAACTTGTAGGTAGGAAGG
GAATAAGAAGCTGCGTAGTATGGTTGCTTGCTAAAACTATCATGTTATAT
GAACTAATGGAGGTATGCCGTCTGGTGTCCTGTAGGTTGAGGATGCTTCT
AAAGCTCTAGAAGCAACAAATGGAACAACTCTGGAGAAGAATGGGCAGAT
ACTAAGAGTAGCTTATGCAAAAAGCATTCTTGGTCCAGGATCAGGGATGT
CAGCATCTTCACAGTCAAGTAGTCTTGCTGCTGCGGCAATTGAGGCAGCA
GCATTTTCCCAGCAGGTATTTTACATCGGTTGTTTATGTAATATTTGATG
TGTAATCTATATACCTGTTCTGAAAGCCAAATATATAATGTCAAAATATC
AAAAGTTGACATGGATTTTTGGTAGAATTATAGGAGTGAACCTGCGGCTA
CTATTTTTCTCCAAGAATAAGGGGAACATGTTCAATGTGTTATTGTACGA
CTGTGCAATTTATTATACTAGGATTGTCTTCTAATATTTGTTAAGACACT
AAACTAAACGTTTATGTTTTTTTCTTTTTTGTTTAAATTTTCCCTACCAA
TTTCTTGAGTACCACAAACTTTGGCCGCCAATTAAACTTGTTATATCATA
ATTAGTAGAAAGCACAGGTGCAGGCAGAGGTATCCTTGGGGTCCACATCA
ATGAATTCTGAGGGCAATTTATGGTCCCTGGTTTCTAATAAAATATTAAG
TTATAGAAAGCAAAGTGGGAAGAGTTACTTGATAGTTATTCGTGGACTTT
AAATGTTGAGCAAATCTCATAATCCTTGCTTTCATCCCTTTAGTATGATG
CTGTTGGATGGGCACCAAAAGAATATAATCCAGATGACAAGCAGCCTACT
CGCGGCCAGGAGCAACGCAGTGACGGAGATATGGTTCAAAAGGATGGTTT
GGCTTTGCAATCCGGCTTTGTATGGGATGAAGCATCTGGCTATTACTATG
ATGCTGCTTCTGGGTTCTACTATGACGGAAATACTGGTTTGATTCTTGTT
CAATTGCATTTTATGGTAGATGAAATGTCCTGAGTGGAATTTTACACTTA
CCCTTGATTCTGTTCTGTAATTGTAACATGCAGGTCTTTATTATGATGGT
AACAGTGGGATTTGGTATTCCTATGACCAACAAACGCAGCAATATATTCC
TTGTACTGATCAAAATGACAACAAAACATCTGGTAACGGATCTGAGCCTT
CCAAGCAAGTGGATGGTGGTTCCAAAAACAGGAAAGTGGTAATCTCTGCA
CCGGCTGCAACTGTTTCATCAGTGGAGAAGCCTGCATCACTACCAGATGC
TGTACAGGCTGCTGCAACAGCAGCAATAGCTGCGGAAAAGAAAGGGAAGG
AGAAGTCAAAAGAGGTGAAAGTCGTTTCAAAGAGCACTATAGTGGCTAAC
AAAAAGAAGTTAAATAATGCAACAATGTGGAAACAGTGGAGTCATGATAA
TCAACAATCCGCTTCAGCTGATGATAGACCTGGTCCAGCTGGTCAAGCCT
CAAAGACCAAGTTCAAATCTGATTCGGCTGCTACAAAAGAGAACAATGCG
TTTAGTTCCGGAGCTGCCGCATCTACGGCAATTCCCCAGGCTGTTGGTTT
GGATTCTCCAGTCAAGTCAAAGCCTGTGAGTAGCACCTCAGGAGGAACTT
TGATGGGGGTCATAAGGAACTCTGGAAGGGGTTTTCAGCCAGGATCATCT
GGTGGTCTTTCTGCCTCTTCAACTGCTCCGCCATCAAGTGCGGGATCATC
TTCATCAGTGAATTCTGATACAATTACAGCTGTGACTCCCTTCAGAACTG
ATGCATCGGCTCTAGGTTCTTATACCCCACCCGTGGCAACTGGGAGTGGT
AAGAGAAGGTTTTCTGAAATGCCACTACCTCCTGCCACTCAAAAGGAACA
ACCTCAGACTACCTATAGGGATCGTGCAGCTGAGAGGAGGAGCTTGTATG
GTTCATCATTTTCCGCTGGAGATGATCTGCCTGATGTTGGATCCGGAGAT
TCAAGTAAGATTCCTTAGCAATTGCTTTTGGGTGGCATGTTCCTTGATGC
CGAATTAAGAACTCATAATACATGATGGACCCTTACAGTCGGTACATTTT
ACATTCAACTTCATTATTAGGTTTGTTAGTCTGTTAGATAATGGTTCTTT
GTAAGTCTTTTAGTTATCCAACTTGATGGCTCCGGTCTATGCTTTATCTC
TCAGTATTTATATTGACTTGTGAGAAATTGTCTCTGCTATCTTCTTTTGG
TGAATTTTCAAGATCGAGATTTTGCTTTAAAAAAGGGTTCTGTGGATTCA
ATGCCTTTTCCCCCTGGTGTTGGAGGACGCGGGTTTACTGCCGATAGTGT
TCAAAGTTATGAGGTGATTACAGCCGACAAAGCCATTGATGAGAACAATG
TGGGGAATCGAATGCTACGGAGCATGGGCTGGCATGAAGGCTTGGTATCA
TCTCTATCTTTTGCACTTGAATGATAATAAATAAATCATCATCCTTTATT
TAGTGTATGTGGGATTTTGGTGTGTTGGTGAATACTTATTTGGTAATCTA
CACCCAAATTATATTTGATAATCACTTATTTGTGGTGACTGTCAGTGTTA
GGTCCAAAAGAACAACTCCAGTAGGCTATGTTTGGTAAAAATAATTTGAC
GACTCAAAAATTGTTTGGGGTTAGATTGTCAAATAATGTGATTATTTGAG
AATCCACAATCCCAAACATGCACTAAATACATTTTGTGTGGTTGGCTTTG
CATGTTAATGTCATTTTATTACAGGACGTAGTATTTTACTTGTTTATGAC
CCTTCTTTTTACATTGAAAGTTGAATGGCATATCAGTAATCAGTTGGCAA
TTTGTTAAAGCAAAAATCATGAAATTCTAACAATTGATTGTTGTGGTGGT
ATTTTTCTGGCCTTGGATTTTGATATGATGCCATAGGGATTAGGCAAGGA
TGGAAGTGGAATGATAGAACCGGTCCAAGCACAGGCCATGGACAGCAGAG
CAGGACTGGGGAGTCAGCAGAAGAAGGTGGATCCTAGTCTTGAGGTGCAG
GCAGGTGATAGTTACAAGACACTCATTCATAAGAAGGCTCTTGCTAGGTT
CCGTGAGATGTCGTAGGAAGCTTCTTGCTTCCATTTACAAGTCATGTGAT
GTGAACGGTGAGCAGACTTTGTGAATGTTTCCTTTGTAGAAATTAGCTTC
GTTTTTATAGAAATTTGATTATTTAATTTAAAGTATGTGTGATAGCATTC
CTTCTCCCGGAAATGACCAGTCATATTTTTGAAAAACAAAACAAATGCCA
TGGAACACAGCTTACTTTGTGATATGATGGTTTCAATGCTTCATCAAGGG
TGTAGACATAAATCAAAGGATATGTTAATTATTTCAATATGAAACCGCCC
GTTATTTAGGAGGTAGTTTCTGAAAAGGGGATCTCAACTAAGGACAAGAT
GGCTTTATAATGTTCACATTTACAAATTACTGTACTT

Coding sequence (CDS) from alignment at chr6:16872160..16879846-

>Cs6g15890.5_Hzau_Valencia_v1.0 ID=Cs6g15890.5_Hzau_Valencia_v1.0; Name=Cs6g15890.5; organism=Citrus sinensis; type=CDS; length=2796bp; location=Sequence derived from: chr6:16872160..16879846- (Citrus sinensis
ATGGATCCTGGTCGCTATGGCCTTCAGCAAGGATGGGATAATAACAGCGC
TCTGGAGGGGTATGGTGCTATCCATGAACCAAATTTCCGGGTTGGTGGTT
CATACGATGAGAGGAGGTTTTTAGATGAAAGGTACTCAAGAGACAACATA
TACCCAAGAAATGCCTTCCAGAGGGAGAACTATCCACCGCCACCTGTTGG
TCTTTGGCCTCAATCAAGAAGGAGAAATTATGAAGAAGATTATTCACTTG
ATAGGGAATCCAGGCGACATGAGAAACCTTACATTGATTCATACCATGAG
ATGGATGCTTATTGTGGCCACGAGATTGATTCTTTTCCGGAATTTGATAA
GTTCCGTGATGGCTATCGCAATATAGAAAATTATCGTGATCATGGTTTTG
AAAGGCCTCCCAGGTTTGGGGGCCGTGACCGTGATGATTATGATGATTAT
GACTATAGATCCCGTTCTTCCCATCAAAGTAGGGAGGATAGCCGAGAGGG
GGATTGTGATTTTGGTCGTCTTAGCTATGATTCTGATTATGACAGAGGCA
GCCGAAGAGATGGTAGTTGGAGGAGACATGAATCCCGTGATAGAGAACGT
GATAAGAGATGTTTGAGTCGGGAAAGAGAGTTGAGTCCACGTAGAAGGCA
TGAGCACTCTGCATCCCGATCTCAGTCTCGATCTAGGTCTCGTGGACGTG
ATGATCGTCCTAGATCGCGGTCACCTCGTGGTCGAAGCCATGGTAGAAGT
CATCGAGAGGACAGCTATGATGATGGTCGATATGAGCGAATTGAGAAGCG
AAGGGACCGTGAAGAGAGGCGTCAGCGGGAGCACTATGCTGTGGCCCCAT
CAGGCACTATTGTTGTGAAGGGTCTTTCTCAAAAGACGACTGAAGAAGAT
TTATACCAGATCCTTGCTGAGTGGGGACCTCTTCGCCATGTTCGTGTGAT
CAAAGAGCGAAATTCCGGCGTCTCACGTGGATTTGCCTTCATTGATTTTC
CTTCTGTGGGAGCAGCACGTGCAATGATGGATAGGATTGGGGATGATGGT
CTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAGTACAGTAGCAAGCCAAC
TGGGGGTTCAGGTGGGCATTATGGTCAAGAAAGTGCTATGGGAGCTAGGC
ATTCTAACCATAAAAGCACAATACCATGTGATTGGATGTGCACCATTTGT
GGCTGTGTGAATTTTGCTCGGCGTACGTCTTGCTTTCAGTGCAATGAGGC
AAGAACTGATGATGCTCCCCCAGCAGAAATGAATTCATCCAATCCAATAC
CTCTGGGGAAGAAAGGATCGGACACAGGTCCCACTCATGTTCTGGTTGTT
CGTGGATTGGATGAGTACGCTGATGAAGAAATGCTTCGTTATGAATTTTC
TAAACACGCTCCAATTAAGGATCTTCGCCTTGTCAGAGACAAGTTCACTC
ATGTATCTAGGGGATTTGCATTCTTACATTTCCATTCGGTTGAGGATGCT
TCTAAAGCTCTAGAAGCAACAAATGGAACAACTCTGGAGAAGAATGGGCA
GATACTAAGAGTAGCTTATGCAAAAAGCATTCTTGGTCCAGGATCAGGGA
TGTCAGCATCTTCACAGTCAAGTAGTCTTGCTGCTGCGGCAATTGAGGCA
GCAGCATTTTCCCAGCAGTATGATGCTGTTGGATGGGCACCAAAAGAATA
TAATCCAGATGACAAGCAGCCTACTCGCGGCCAGGAGCAACGCAGTGACG
GAGATATGGTTCAAAAGGATGGTTTGGCTTTGCAATCCGGCTTTGTATGG
GATGAAGCATCTGGCTATTACTATGATGCTGCTTCTGGGTTCTACTATGA
CGGAAATACTGGTCTTTATTATGATGGTAACAGTGGGATTTGGTATTCCT
ATGACCAACAAACGCAGCAATATATTCCTTGTACTGATCAAAATGACAAC
AAAACATCTGGTAACGGATCTGAGCCTTCCAAGCAAGTGGATGGTGGTTC
CAAAAACAGGAAAGTGGTAATCTCTGCACCGGCTGCAACTGTTTCATCAG
TGGAGAAGCCTGCATCACTACCAGATGCTGTACAGGCTGCTGCAACAGCA
GCAATAGCTGCGGAAAAGAAAGGGAAGGAGAAGTCAAAAGAGGTGAAAGT
CGTTTCAAAGAGCACTATAGTGGCTAACAAAAAGAAGTTAAATAATGCAA
CAATGTGGAAACAGTGGAGTCATGATAATCAACAATCCGCTTCAGCTGAT
GATAGACCTGGTCCAGCTGGTCAAGCCTCAAAGACCAAGTTCAAATCTGA
TTCGGCTGCTACAAAAGAGAACAATGCGTTTAGTTCCGGAGCTGCCGCAT
CTACGGCAATTCCCCAGGCTGTTGGTTTGGATTCTCCAGTCAAGTCAAAG
CCTGTGAGTAGCACCTCAGGAGGAACTTTGATGGGGGTCATAAGGAACTC
TGGAAGGGGTTTTCAGCCAGGATCATCTGGTGGTCTTTCTGCCTCTTCAA
CTGCTCCGCCATCAAGTGCGGGATCATCTTCATCAGTGAATTCTGATACA
ATTACAGCTGTGACTCCCTTCAGAACTGATGCATCGGCTCTAGGTTCTTA
TACCCCACCCGTGGCAACTGGGAGTGGTAAGAGAAGGTTTTCTGAAATGC
CACTACCTCCTGCCACTCAAAAGGAACAACCTCAGACTACCTATAGGGAT
CGTGCAGCTGAGAGGAGGAGCTTGTATGGTTCATCATTTTCCGCTGGAGA
TGATCTGCCTGATGTTGGATCCGGAGATTCAAGTAAGATTCCTTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR001876	Znf_RanBP2
IPR035623	SUA-like_OCRE
IPR035979	RBD_domain_sf
IPR036443	Znf_RanBP2_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding