Cs6g16400.1, Cs6g16400.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis

Transcript Overview


Name	Cs6g16400.1
Unique Name	Cs6g16400.1_Hzau_Valencia_v1.0
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	1719

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis Valencia genome v1.0 (HZAU)	2013-01-22
C. sinensis v2.0, HZAU CDS	2018-06-07
C. sinensis v2.0 peptides	2018-06-21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cs6g16400	Cs6g16400_Hzau_Valencia_v1.0	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g16400.1	Cs6g16400.1_Hzau_Valencia_v2.0-protein	Citrus sinensis	polypeptide
Cs6g16400.1_Hzau_Valencia_v1.0	Cs6g16400.1_Hzau_Valencia_v1.0	Citrus sinensis	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g16400.1.cds.6	Cs6g16400.1.cds.6_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g16400.1.cds.5	Cs6g16400.1.cds.5_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g16400.1.cds.4	Cs6g16400.1.cds.4_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g16400.1.cds.3	Cs6g16400.1.cds.3_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g16400.1.cds.2	Cs6g16400.1.cds.2_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g16400.1.cds.1	Cs6g16400.1.cds.1_Hzau_Valencia_v1.0	Citrus sinensis	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g16400.1.exon.6	Cs6g16400.1.exon.6_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g16400.1.exon.5	Cs6g16400.1.exon.5_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g16400.1.exon.4	Cs6g16400.1.exon.4_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g16400.1.exon.3	Cs6g16400.1.exon.3_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g16400.1.exon.2	Cs6g16400.1.exon.2_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g16400.1.exon.1	Cs6g16400.1.exon.1_Hzau_Valencia_v1.0	Citrus sinensis	exon

Homology

The following BLAST results are available for this feature:

BLAST of Cs6g16400.1 vs. DB:SwissProt

BLAST of Cs6g16400.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 235..255
None	No IPR available	GENE3D	3.30.310.130		coord: 478..566 e-value: 3.0E-6 score: 29.4
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 505..564 e-value: 2.6E-7 score: 30.6
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PROSITE	PS50600	ULP_PROTEASE	coord: 412..572 score: 8.681
IPR015410	Domain of unknown function DUF1985	PFAM	PF09331	DUF1985	coord: 92..197 e-value: 6.3E-10 score: 39.1
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 479..554

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
protein sequence
mRNA from alignment at chr6:17188524..17191703-
coding sequence from alignment at chr6:17188524..17191703-

mRNA sequence

>Cs6g16400.1_Hzau_Valencia_v1.0 ID=Cs6g16400.1_Hzau_Valencia_v1.0; Name=Cs6g16400.1; organism=Citrus sinensis; type=mRNA; length=1719bp
ATGGGCAAATCAAAATTAGCATTGCATAACCCACCCGGACCGATTAAAGA
ACCGGGAATGATGAAGATACCTTATGTTGATCACTTCCCTAGGCGTATCA
CGAGTATGTGCAAATTAGATGTTGTTGTTAATGCCATCCAGGAAAAATTA
ACAAGGCAACAGTTGAAGCTATTCAAAGACGATATATTTGGGCATTTCCT
ACAGTGCTGGAGCTATTCATTTAGTGGCGTGATTGTGCACAATATATTGC
TTCGGCAAGTGTCACATGGCGATGGAAATGACAAAGATGAGTTATGGTTT
CAAGTTGGCGACCATTTGATACGGCTATCGATTGGAGAGTGGTGCCTAGT
AACGGGACTTTGGTATGGCGAAAAAGTATTCCTGACGAAGCATAAAACAA
ATCATAGGTTACTTAATAAGTACTTTGGAGGCAGGATTCGCGATATAAAT
CTTGGCCAGTTCGAGGAAATATTTATGAACTTACGCTTCAAGACTATGAA
TGACATCGATGCGCTAAAAATTGCCATGTTTTACTTTGCCGATAGAGTGC
TACATGGAAGAAAGGATCATTGTCAAATCAATTTCAATTTACTTAATGAG
GCAAGGACTAAGTTCCGCAATGATTATTTCGTTGGACGACTGGATAAAAT
AGAGTCTTCCATTCACGAGTTGAGGTCGGAACTTCAGACTGGACACAGTT
CCATTAACGAACTGAGGTCAGAACTTATGGCGGAACGCAGAGAAGCACAA
CAATATAGAGCAGCGGTCATGGGGTTTATGGCTTCGTTTGGCGCGGGTGC
TTCAAAGGGTGCGTACGGTGATTCTCCGTTTGGCCCCGCACCCTCGGCCC
CAGATTGCTATGGTCCGAACGTTGATGCTGGCTATGGTACGCATACTGAT
GCTGGTAATGACGACGAGCACACCCCTATGTCCTTGTACAGTCTACATGG
GGACATATGTGATGACAGTGTACAGATATTCACGGAGGCACCTCCCGGCG
TTAGTAAGTTTGGCCGTCCGTATCGACCGTCGTATATATTTGGCAGTCCT
TACTTCATTCCTCCTTTCAAGAGAGTTAGGAATGTCAGGCCTCTACCCGC
ACTCAACATTACGGACTATGAAATTGATGAAAGATCGAGTATGGATATGA
ATCCGCTTAGGGGACTAGAAGACTCAAGACTATGTGAAGAGTTTGATCAG
TGGTTTGCCGGCAACATTTCCGTGGATCGGCCCGTCCAACAGTCTCGAAA
TTTCTTTGAAATACTCATGGGCAATGCTTCGATGGGGTGGCTTGGTGACG
AGGTGTTCCTAAAGCAATTATGGAACAATGGTAGTTGTGATGTCAATTCA
TTACAATATGGCAACAACTTGAGCAGCTATATGGATGGGCGGGAAGATCT
CATGTCCAAACCGTTTACGGATGTCGATATGGTGTTCCTAAAGCAATTAT
GGAACAATGGTAGTTGTGATGTCAATTCATTACAATATGGCAACAACTTG
AGCAGCTATATGGATGGGCGGGAAGATCTCATGTCCAAACCGTTTACGGA
TGTCGATATGATATTCATCCCTGTGAATTTGGGCGGCGATCATTGGGTAC
TAGCTCGAGCGGACCTTCGCGCGAGGAGGATGCGGATTTACGACTTGTTG
GTTACCTTTCGCGAGGACAAAACATATTTGCGTAAATTCAAACCTCTTCA
GGTCGTCTTCCCCCAATAG

protein sequence of Cs6g16400.1

>Cs6g16400.1_Hzau_Valencia_v2.0-protein ID=Cs6g16400.1_Hzau_Valencia_v2.0-protein; Name=Cs6g16400.1; organism=Citrus sinensis; type=polypeptide; length=573bp
MGKSKLALHNPPGPIKEPGMMKIPYVDHFPRRITSMCKLDVVVNAIQEKL
TRQQLKLFKDDIFGHFLQCWSYSFSGVIVHNILLRQVSHGDGNDKDELWF
QVGDHLIRLSIGEWCLVTGLWYGEKVFLTKHKTNHRLLNKYFGGRIRDIN
LGQFEEIFMNLRFKTMNDIDALKIAMFYFADRVLHGRKDHCQINFNLLNE
ARTKFRNDYFVGRLDKIESSIHELRSELQTGHSSINELRSELMAERREAQ
QYRAAVMGFMASFGAGASKGAYGDSPFGPAPSAPDCYGPNVDAGYGTHTD
AGNDDEHTPMSLYSLHGDICDDSVQIFTEAPPGVSKFGRPYRPSYIFGSP
YFIPPFKRVRNVRPLPALNITDYEIDERSSMDMNPLRGLEDSRLCEEFDQ
WFAGNISVDRPVQQSRNFFEILMGNASMGWLGDEVFLKQLWNNGSCDVNS
LQYGNNLSSYMDGREDLMSKPFTDVDMVFLKQLWNNGSCDVNSLQYGNNL
SSYMDGREDLMSKPFTDVDMIFIPVNLGGDHWVLARADLRARRMRIYDLL
VTFREDKTYLRKFKPLQVVFPQ*

protein sequence of Cs6g16400.1_Hzau_Valencia_v1.0

>Cs6g16400.1_Hzau_Valencia_v1.0 ID=Cs6g16400.1_Hzau_Valencia_v1.0; Name=Cs6g16400.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=573bp
MGKSKLALHNPPGPIKEPGMMKIPYVDHFPRRITSMCKLDVVVNAIQEKL
TRQQLKLFKDDIFGHFLQCWSYSFSGVIVHNILLRQVSHGDGNDKDELWF
QVGDHLIRLSIGEWCLVTGLWYGEKVFLTKHKTNHRLLNKYFGGRIRDIN
LGQFEEIFMNLRFKTMNDIDALKIAMFYFADRVLHGRKDHCQINFNLLNE
ARTKFRNDYFVGRLDKIESSIHELRSELQTGHSSINELRSELMAERREAQ
QYRAAVMGFMASFGAGASKGAYGDSPFGPAPSAPDCYGPNVDAGYGTHTD
AGNDDEHTPMSLYSLHGDICDDSVQIFTEAPPGVSKFGRPYRPSYIFGSP
YFIPPFKRVRNVRPLPALNITDYEIDERSSMDMNPLRGLEDSRLCEEFDQ
WFAGNISVDRPVQQSRNFFEILMGNASMGWLGDEVFLKQLWNNGSCDVNS
LQYGNNLSSYMDGREDLMSKPFTDVDMVFLKQLWNNGSCDVNSLQYGNNL
SSYMDGREDLMSKPFTDVDMIFIPVNLGGDHWVLARADLRARRMRIYDLL
VTFREDKTYLRKFKPLQVVFPQ*

mRNA from alignment at chr6:17188524..17191703-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=3180bp; location=Sequence derived from: chr6:17188524..17191703- (Citrus sinensis
ATGGGCAAATCAAAATTAGCATTGCATAACCCACCCGGACCGATTAAAGA
ACCGGGAATGATGAAGATACCTTATGTTGATCACTTCCCTAGGCGTATCA
CGAGTATGTGCAAATTAGATGTTGTTGTTAATGCCATCCAGGAAAAATTA
ACAAGGCAACAGTTGAAGCTATTCAAAGACGATATATTTGGGCATTTCCT
ACAGTGCTGGAGCTATTCATTTAGTGGCGTGATTGTGCACAATATATTGC
TTCGGCAAGTGTCACATGGCGATGGAAATGACAAAGATGAGTTATGGTTT
CAAGTTGGCGACCATTTGATACGGCTATCGATTGGAGAGTGGTGCCTAGT
AACGGGACTTTGGTATGGCGAAAAAGTATTCCTGACGAAGCATAAAACAA
ATCATAGGTTACTTAATAAGTACTTTGGAGGCAGGATTCGCGATATAAAT
CTTGGCCAGTTCGAGGAAATATTTATGAACTTACGCTTCAAGACTATGAA
TGACATCGATGCGCTAAAAATTGCCATGTTTTACTTTGCCGATAGAGTGC
TACATGGAAGAAAGGATCATTGTCAAATCAATTTCAATTTACTTAATGAG
GTAGATGACATAAATCATTTTCGAAGTATTCCGTGGGGTCGTTTGTCATG
GGAAACAATATATAAAAGCATTGATAATGTATTGAACGACAAAGCTAAAA
AATTTAAGAAGGCAAGCGCAGAAAATCCATTGCATAGAATTGAGAAATAC
AACTTTTACGGCTTTACGTCGGCAGTGCATGTGAGTGAAGAAGTTTTTTT
TATAACTTAGTTTTGTTATAATAAATATTTAATGACACGTTTTTTTACTT
CATATCTTTCCTTGTTGAAGGCATGGATTTTTGAAGCGATCGAAGGACTA
CCATTAGAGTGGGTGGAGAAAATTAAGAGGAAGGGTGCTCGGATCGTGCG
ATGGAAGCCCGTGGCTTCTTCAAATATTAACTTCGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGTGCTGC
CGACGACCATTATGAATCCGCACATGATTCAGATGACAGAAATGAGCCAG
AGGTAACTTCTGTCGTCTTGAACATTTACAATGCACATATACTTATCCGA
CATTTTGTCATTACTTTCTTATTTGCGTAAATTGTAGGCAAGGACTAAGT
TCCGCAATGATTATTTCGTTGGACGACTGGATAAAATAGAGTCTTCCATT
CACGAGTTGAGGTCGGAACTTCAGACTGGACACAGTTCCATTAACGAACT
GAGGTCAGAACTTATGGCGGAACGCAGAGAAGCACAACAATATAGAGCAG
CGGTCATGGGGTTTATGGCTTCGTTTGGCGCGGGTGCTTCAAAGGGTGCG
TACGGTGATTCTCCGTTTGGCCCCGCACCCTCGGTGAGCAAGTTTTGTAT
GTTTTCGTTATGTTATTATGATTTCAAACCCGAACTTATGTTAATATGTT
CATCTCCTCGAAACAACAGGCCCCAGATTGCTATGGTCCGAACGTTGATG
CTGGCTATGGTACGCATACTGATGCTGGTAATGACGACGAGCACACCCCT
ATGTCCTTGTACAGTCTACATGGGGACATATGTGATGACAGTGTACAGAT
ATTCACGGAGGCACCTCCCGGCGTTAGTAAGTTTGGCCGTCCGTATCGAC
CGTCGTATATATTTGGCAGTCCTTACTTCATTCCTCCTTTCAAGAGAGTT
AGGAATGTCAGGCCTCTACCCGCACTCAACATTACGGACTATGAAATTGA
TGAAAGATCGAGTATGGATATGAATCCGCTTAGGGGACTAGAAGACTCAA
GACTATGTGAAGAGTTTGATCAGTGGTTTGCCGGCAACATTTCCGTGGAT
CGGCCCGTCCAACAGTCTCGAAATTTCTTTGAAATACTCATGGGCAATGC
TTCGATGGGGTGGCTTGGTGACGAGGTAAGTGTGTTTAATGGTTAGTACA
TTACAATACACAATAATATTTCTGCTGGCATGGATATTGATATAAATTTA
CTTGGTATAATCCCTTCACAGCATATTCACACGTATTACCGCTTGATCAG
CGAGAAGCAACAGCGGTTTCCAAATGCACTACCACAGCGCGTCACGCATA
CAGATACATACTTTTGGGCATGTTTTAAAATCCATAATCACAAATTTTAT
AATCATTAATTATAATTTCGATGTTTTAAATATCTCGAAATGTTATTAAT
TTTCTACTCATCGTGTAATAGGTGTTCCTAAAGCAATTATGGAACAATGG
TAGTTGTGATGTCAATTCATTACAATATGGCAACAACTTGAGCAGCTATA
TGGATGGGCGGGAAGATCTCATGTCCAAACCGTTTACGGATGTCGATATG
GTAAAAATTGTCACTGATCTCATGTCCAAAATATCTCGAAATGTTATTAA
TTTTCTACTCATCGTGTAATAGGTGTTCCTAAAGCAATTATGGAACAATG
GTAGTTGTGATGTCAATTCATTACAATATGGCAACAACTTGAGCAGCTAT
ATGGATGGGCGGGAAGATCTCATGTCCAAACCGTTTACGGATGTCGATAT
GGTAAGAATTGTCACTTTTATGTAGATATTTTGTGTATAAAATATACTAA
TTAACCTATTTATTTATGTAGATATTCATCCCTGTGAATTTGGGCGGCGA
TCATTGGGTACTAGCTCGAGCGGACCTTCGCGCGAGGAGGATGCGGATTT
ACGACTTGTTGGTTACCTTTCGCGAGGACAAAACATATTTGCGTAAATTC
AAACCTCTTCAGGTCGTCTTCCCCCAATAG

Coding sequence (CDS) from alignment at chr6:17188524..17191703-

>Cs6g16400.1_Hzau_Valencia_v1.0 ID=Cs6g16400.1_Hzau_Valencia_v1.0; Name=Cs6g16400.1; organism=Citrus sinensis; type=CDS; length=1719bp; location=Sequence derived from: chr6:17188524..17191703- (Citrus sinensis
ATGGGCAAATCAAAATTAGCATTGCATAACCCACCCGGACCGATTAAAGA
ACCGGGAATGATGAAGATACCTTATGTTGATCACTTCCCTAGGCGTATCA
CGAGTATGTGCAAATTAGATGTTGTTGTTAATGCCATCCAGGAAAAATTA
ACAAGGCAACAGTTGAAGCTATTCAAAGACGATATATTTGGGCATTTCCT
ACAGTGCTGGAGCTATTCATTTAGTGGCGTGATTGTGCACAATATATTGC
TTCGGCAAGTGTCACATGGCGATGGAAATGACAAAGATGAGTTATGGTTT
CAAGTTGGCGACCATTTGATACGGCTATCGATTGGAGAGTGGTGCCTAGT
AACGGGACTTTGGTATGGCGAAAAAGTATTCCTGACGAAGCATAAAACAA
ATCATAGGTTACTTAATAAGTACTTTGGAGGCAGGATTCGCGATATAAAT
CTTGGCCAGTTCGAGGAAATATTTATGAACTTACGCTTCAAGACTATGAA
TGACATCGATGCGCTAAAAATTGCCATGTTTTACTTTGCCGATAGAGTGC
TACATGGAAGAAAGGATCATTGTCAAATCAATTTCAATTTACTTAATGAG
GCAAGGACTAAGTTCCGCAATGATTATTTCGTTGGACGACTGGATAAAAT
AGAGTCTTCCATTCACGAGTTGAGGTCGGAACTTCAGACTGGACACAGTT
CCATTAACGAACTGAGGTCAGAACTTATGGCGGAACGCAGAGAAGCACAA
CAATATAGAGCAGCGGTCATGGGGTTTATGGCTTCGTTTGGCGCGGGTGC
TTCAAAGGGTGCGTACGGTGATTCTCCGTTTGGCCCCGCACCCTCGGCCC
CAGATTGCTATGGTCCGAACGTTGATGCTGGCTATGGTACGCATACTGAT
GCTGGTAATGACGACGAGCACACCCCTATGTCCTTGTACAGTCTACATGG
GGACATATGTGATGACAGTGTACAGATATTCACGGAGGCACCTCCCGGCG
TTAGTAAGTTTGGCCGTCCGTATCGACCGTCGTATATATTTGGCAGTCCT
TACTTCATTCCTCCTTTCAAGAGAGTTAGGAATGTCAGGCCTCTACCCGC
ACTCAACATTACGGACTATGAAATTGATGAAAGATCGAGTATGGATATGA
ATCCGCTTAGGGGACTAGAAGACTCAAGACTATGTGAAGAGTTTGATCAG
TGGTTTGCCGGCAACATTTCCGTGGATCGGCCCGTCCAACAGTCTCGAAA
TTTCTTTGAAATACTCATGGGCAATGCTTCGATGGGGTGGCTTGGTGACG
AGGTGTTCCTAAAGCAATTATGGAACAATGGTAGTTGTGATGTCAATTCA
TTACAATATGGCAACAACTTGAGCAGCTATATGGATGGGCGGGAAGATCT
CATGTCCAAACCGTTTACGGATGTCGATATGGTGTTCCTAAAGCAATTAT
GGAACAATGGTAGTTGTGATGTCAATTCATTACAATATGGCAACAACTTG
AGCAGCTATATGGATGGGCGGGAAGATCTCATGTCCAAACCGTTTACGGA
TGTCGATATGATATTCATCCCTGTGAATTTGGGCGGCGATCATTGGGTAC
TAGCTCGAGCGGACCTTCGCGCGAGGAGGATGCGGATTTACGACTTGTTG
GTTACCTTTCGCGAGGACAAAACATATTTGCGTAAATTCAAACCTCTTCA
GGTCGTCTTCCCCCAATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003653	Peptidase_C48_C
IPR015410	DUF1985
IPR038765	Papain-like_cys_pep_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0008234	cysteine-type peptidase activity