Cs6g17340.1, Cs6g17340.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MYB20_ARATH (Transcription factor MYB20 OS=Arabidopsis thaliana OX=3702 GN=MYB20 PE=2 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 1.227e-94 Identity = 159/263 (60.46%), Postives = 190/263 (72.24%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLSTT--DDQQPQVKINQQEQEPLMINDESIIDRNNKEP-----ETSVQSSITEVNKEEDKAMSMTSSPLFDHIDAATMEIMNNNFCTDDVPLIEPHEILVPXXXXXXXXXXXXXXXXXXXXKLLEEWQFHDFEWA 768 MGRQPCCDKVGLKKGPWTAEED+KLINFILTNGQCCWRAVPKL+GLLRCGKSCRLRWTNYLRPDLKRGLLS+YEEKMVIDLH+QLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLS +D++P K+ +NN P E ++++I +++ E+ D MEI N + +DVPLIE + + CS S+ SSS+ + S ++ + L++ QF +FEW+ Sbjct: 1 MGRQPCCDKVGLKKGPWTAEEDRKLINFILTNGQCCWRAVPKLSGLLRCGKSCRLRWTNYLRPDLKRGLLSDYEEKMVIDLHSQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLSIVEKEDEEPLKKL-----------------QNNTVPFQETMERPLENNIKNISRLEESLG-----------DDQFMEI-NLEYGVEDVPLIETESLDLICSNSTMSSSTSTSSHSSNDSSFLKDLQFPEFEWS 234
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida OX=4102 GN=ODO1 PE=2 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 3.384e-83 Identity = 118/148 (79.73%), Postives = 133/148 (89.86%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLSTTDD--QQPQVKINQQEQ 438 MGRQPCCDK+G+KKGPWTAEEDKKLI+FILTNGQCCWRAVPKLAGL RCGKSCRLRWTNYLRPDLKRGLLS+ EEK+VIDLH++LGNRWSKIA+ LPGRTDNEIKNHWNTHIKKKL KMGIDP+TH+PL + QP + +Q ++ Sbjct: 1 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLKKEANLSDQPTTESDQNKE 148
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens OX=3218 GN=PP2 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 5.943e-69 Identity = 95/129 (73.64%), Postives = 114/129 (88.37%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPL 387 MGR+PCC+KVGL++GPWT+EED+KL++ I NG CWRA+PKLAGLLRCGKSCRLRWTNYLRPDLKRG+ SE EE +++DLHA LGNRWS+IA+ LPGRTDNEIKN+WNT +KK+LR G+DP TH PL Sbjct: 1 MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNTHLPL 129
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MYB17_ARATH (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB17 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 9.412e-65 Identity = 93/129 (72.09%), Postives = 106/129 (82.17%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPL 387 MGR PCCDK+GLKKGPWT EED+ L+ I NG WR +PKLAGLLRCGKSCRLRWTNYLRPD+KRG + EEK+VI LHA LGNRW+ IA+ LPGRTDNEIKN WNTH+KK+L MG+DP TH+PL Sbjct: 1 MGRTPCCDKIGLKKGPWTPEEDEVLVAHIKKNGHGSWRTLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKRLLSMGLDPRTHEPL 129
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus OX=4151 GN=MYB315 PE=2 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 1.531e-64 Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPL 387 M RQPC +K GLK+GPWT EED+KL +++L NG WR +PKLAGL RCGKSCRLRW NYLRPDLK+G L+E EE +I+LHA LGNRWSKIA H+PGRTDNEIKN+WNTHIKKKL+ +GIDP H+P Sbjct: 1 MERQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPNNHQPF 129
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MYB16_ARATH (Transcription factor MYB16 OS=Arabidopsis thaliana OX=3702 GN=MYB16 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 5.620e-64 Identity = 92/132 (69.70%), Postives = 110/132 (83.33%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLSTT 396 MGR PCCDK+GLKKGPWT EED+KL+ +I +G WR++P+ AGL RCGKSCRLRWTNYLRPD+KRG + EE+ +I LHA LGNRWS IA+HLP RTDNEIKN+WNTH+KK+L KMGIDP+THKP + T Sbjct: 1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNYLRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGIDPVTHKPKNET 132
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MYB41_ARATH (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.335e-63 Identity = 89/128 (69.53%), Postives = 106/128 (82.81%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKP 384 MGR PCCDK G+KKGPWTAEED+KLI++I +G WR +PK AGL RCGKSCRLRWTNYLRPD+KRG S EE+ +I LH+ +GN+WS IA+ LPGRTDNEIKNHWNTHI+K+L + GIDP+TH P Sbjct: 1 MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKRLVRSGIDPVTHSP 128
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MYB53_ARATH (Transcription factor MYB53 OS=Arabidopsis thaliana OX=3702 GN=MYB53 PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 1.448e-62 Identity = 93/134 (69.40%), Postives = 107/134 (79.85%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLSTTDD 402 MGR P D+ GLKKGPW EED KLIN+I +G W A+PKLAGL RCGKSCRLRWTNYLRPD+KRG S EE+ +++LHA LGN+WS IASHLPGRTDNEIKN WNTH+KKKL +MG DP+TH+P TDD Sbjct: 1 MGRSPSSDETGLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSAEEEETILNLHAVLGNKWSMIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQP--RTDD 132
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MY106_ARATH (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 1.609e-62 Identity = 90/127 (70.87%), Postives = 106/127 (83.46%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHK 381 MGR PCCDK GLKKGPWT EED+KL+ +I +G WR++P+ AGL RCGKSCRLRWTNYLRPD+KRG + EE+ +I LHA LGNRWS IA+HLP RTDNEIKN+WNTH+KK+L KMGIDP+THK Sbjct: 1 MGRSPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPVTHK 127
BLAST of Cs6g17340.1 vs. DB:SwissProt
Match: MYB93_ARATH (Transcription factor MYB93 OS=Arabidopsis thaliana OX=3702 GN=MYB93 PE=1 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 2.055e-62 Identity = 92/139 (66.19%), Postives = 111/139 (79.86%), Query Frame = 1 Query: 1 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPLSTTDDQQPQV 417 MGR PCCD+ GLKKGPWT EED+KLI++I +G WRA+PKLA L RCGKSCRLRWTNYLRPD+KRG S EE+ ++ LH+ LGN+WS IA+HL GRTDNEIKN WNTH+KKKL +MGIDP+TH+P + PQ+ Sbjct: 1 MGRSPCCDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNYLRPDIKRGKFSAEEEQTILHLHSILGNKWSAIATHLQGRTDNEIKNFWNTHLKKKLIQMGIDPVTHQPRTDLFASLPQL 139 The following BLAST results are available for this feature:
BLAST of Cs6g17340.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g17340.1_Hzau_Valencia_v1.0 ID=Cs6g17340.1_Hzau_Valencia_v1.0; Name=Cs6g17340.1; organism=Citrus sinensis; type=mRNA; length=1300bpback to top protein sequence of Cs6g17340.1 >Cs6g17340.1_Hzau_Valencia_v2.0-protein ID=Cs6g17340.1_Hzau_Valencia_v2.0-protein; Name=Cs6g17340.1; organism=Citrus sinensis; type=polypeptide; length=312bpback to top protein sequence of Cs6g17340.1_Hzau_Valencia_v1.0 >Cs6g17340.1_Hzau_Valencia_v1.0 ID=Cs6g17340.1_Hzau_Valencia_v1.0; Name=Cs6g17340.1_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=312bpback to top mRNA from alignment at chr6:17840358..17842813- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2456bp; location=Sequence derived from: chr6:17840358..17842813- (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:17840358..17842813- >Cs6g17340.1_Hzau_Valencia_v1.0 ID=Cs6g17340.1_Hzau_Valencia_v1.0; Name=Cs6g17340.1; organism=Citrus sinensis; type=CDS; length=936bp; location=Sequence derived from: chr6:17840358..17842813- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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