Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cs6g18030.3 Cs6g18030.3_Hzau_Valencia_v2.0-protein Citrus sinensis polypeptide Cs6g18030.3_Hzau_Valencia_v1.0 Cs6g18030.3_Hzau_Valencia_v1.0 Citrus sinensis polypeptide
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g18030.3.utr3.3 Cs6g18030.3.utr3.3_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR Cs6g18030.3.utr3.2 Cs6g18030.3.utr3.2_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR Cs6g18030.3.utr3.1 Cs6g18030.3.utr3.1_Hzau_Valencia_v1.0 Citrus sinensis three_prime_UTR
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g18030.3.exon.6 Cs6g18030.3.exon.6_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g18030.3.exon.5 Cs6g18030.3.exon.5_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g18030.3.exon.4 Cs6g18030.3.exon.4_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g18030.3.exon.3 Cs6g18030.3.exon.3_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g18030.3.exon.2 Cs6g18030.3.exon.2_Hzau_Valencia_v1.0 Citrus sinensis exon Cs6g18030.3.exon.1 Cs6g18030.3.exon.1_Hzau_Valencia_v1.0 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g18030.3.cds.4 Cs6g18030.3.cds.4_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g18030.3.cds.3 Cs6g18030.3.cds.3_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g18030.3.cds.2 Cs6g18030.3.cds.2_Hzau_Valencia_v1.0 Citrus sinensis CDS Cs6g18030.3.cds.1 Cs6g18030.3.cds.1_Hzau_Valencia_v1.0 Citrus sinensis CDS
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cs6g18030.3.utr5.1 Cs6g18030.3.utr5.1_Hzau_Valencia_v1.0 Citrus sinensis five_prime_UTR
Homology
BLAST of Cs6g18030.3 vs. DB:SwissProt
Match:
EFMT2_HUMAN (EEF1A lysine methyltransferase 2 OS=Homo sapiens OX=9606 GN=EEF1AKMT2 PE=1 SV=2)
HSP 1 Score: 107.071 bits (266), Expect = 3.130e-26
Identity = 63/160 (39.38%), Postives = 89/160 (55.62%), Query Frame = 1
Query: 229 NSDKEEPDPEG-MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---MNISVQILTYFIC 696
SDK P +G + S LG + +WD+ Y EL FRE+G GE+WFG + M+ + W Q H + P++ SVLDIGTGNG+ L EL+K GFS++TG+DYS AI L+ S+ ++G S IK V +N+S Q+ + IC
Sbjct: 16 RSDKGSPGEDGFVPSALGTREHWDAVYERELQTFREYGDTGEIWFGEESMNRLIRWM--------QKHKI---------PLDA--------SVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSIIEKEGLSNIKLKVEDFLNLSTQLSGFHIC 150
BLAST of Cs6g18030.3 vs. DB:SwissProt
Match:
EFMT2_MOUSE (EEF1A lysine methyltransferase 2 OS=Mus musculus OX=10090 GN=Eef1akmt2 PE=1 SV=1)
HSP 1 Score: 97.8265 bits (242), Expect = 3.962e-23
Identity = 62/200 (31.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query: 253 PEG-------MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---MNISVQILTYFIC---------------KSERNEHYTFDLYQI----GYYISNEC 765
PEG + S LG + +WD+ Y EL F+E+G GE+WFG + M+ + W Q H + P++ SVLDIGTGNG+ L EL K GFS++TG+DYS AI L+ S+ ++G S I V +N S ++ + +C E+ + Y L ++ G+++ C
Sbjct: 18 PEGSSAADDFVPSALGTREHWDAVYERELRTFQEYGDTGEIWFGEESMNRLIRWM--------QKHKI---------PLDA--------SVLDIGTGNGVFLVELVKHGFSNITGIDYSPSAIKLSASILEKEGLSNINLKVEDFLNPSTKLSGFHVCVDKGTYDAISLNPDNAIEKRKQYVMSLSRVLEVKGFFLITSC 192
BLAST of Cs6g18030.3 vs. DB:SwissProt
Match:
EFMT2_DANRE (EEF1A lysine methyltransferase 2 OS=Danio rerio OX=7955 GN=eef1akmt2 PE=2 SV=1)
HSP 1 Score: 92.4337 bits (228), Expect = 3.364e-21
Identity = 56/189 (29.63%), Postives = 89/189 (47.09%), Query Frame = 1
Query: 265 ASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---MNISVQILTYFIC---------------KSERNEHYTFDLYQI----GYYISNEC 765
S LG + YWD AY EL +++ G GE+WFG + M V W ++++ + EN ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L ++ +G I V +N S ++ + +C + E +HY L + G++I C
Sbjct: 25 PSKLGTKEYWDGAYKRELQTYKDIGDVGEIWFGEESMHRVIRW-------------------MEAQNISENA------AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVEEGLKNINIQVEDFLNPSTELKGFDVCIDKGTFDAISLNPEDREEAKKHYVTSLRAVMRPNGFFIITSC 188
BLAST of Cs6g18030.3 vs. DB:SwissProt
Match:
EFM4_SCHPO (Protein-lysine N-methyltransferase efm4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=see1 PE=2 SV=1)
HSP 1 Score: 70.8626 bits (172), Expect = 2.277e-13
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 1
Query: 268 SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ------GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNI 666
S LG + YWD+ Y E++NF E GEVWFG + + + W + +H+ E E + + VLD+GTGNG LL L ++ L GVDYSE AI LA+++A FS +KF ++I
Sbjct: 7 SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLE------------DHISTSFREVSEA-----APFRVLDLGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLAKNIARHRQFSDKVKFQQLDI 129
BLAST of Cs6g18030.3 vs. DB:SwissProt
Match:
EFM4_YEAST (Protein-lysine N-methyltransferase EFM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EFM4 PE=1 SV=1)
HSP 1 Score: 61.6178 bits (148), Expect = 6.484e-10
Identity = 47/148 (31.76%), Postives = 70/148 (47.30%), Query Frame = 1
Query: 229 NSDKEEPDPEGMASM----------LGLQSYWDSAYADELANFREHGH-AGEVWFGADVMDVVASWTKSLCISISQGHMLNH-VEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDG 633
N E PE + M LG + YWD YA EL NFR + G+ WF S ++ M++ V+++ + + EN SV+D+GTGNG +L EL + F L G+DYSE+++ LA ++A G
Sbjct: 15 NGIMERTQPEKVVQMQGTADLSTSKLGTKKYWDELYALELENFRRNPQDTGDCWFSD---------------SDAEQKMIDFLVDNIGAYRISENA------SVVDLGTGNGHMLFELHQTEFQGKLVGIDYSEESVKLASNIAEATG 141
The following BLAST results are available for this feature:
BLAST of Cs6g18030.3 vs. DB:SwissProt
Analysis Date: 2018-06-07 (
C. sinensis v2.0, HZAU CDS )
Total hits: 5
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 3.13e-26 / Id = 39.38 Expect = 3.96e-23 / Id = 31.00 Expect = 3.36e-21 / Id = 29.63 Expect = 2.28e-13 / Id = 35.00 Expect = 6.48e-10 / Id = 31.76 Sequence EFMT2_HUMAN EFMT2_MOUSE EFMT2_DANRE EFM4_SCHPO EFM4_YEAST
Match Name E-value Identity Description
EFMT2_HUMAN 3.130e-26 39.38 EEF1A lysine methyltransferase 2 OS=Homo sapiens O... [more] EFMT2_MOUSE 3.962e-23 31.00 EEF1A lysine methyltransferase 2 OS=Mus musculus O... [more] EFMT2_DANRE 3.364e-21 29.63 EEF1A lysine methyltransferase 2 OS=Danio rerio OX... [more] EFM4_SCHPO 2.277e-13 35.00 Protein-lysine N-methyltransferase efm4 OS=Schizos... [more] EFM4_YEAST 6.484e-10 31.76 Protein-lysine N-methyltransferase EFM4 OS=Sacchar... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cs6g18030.3_Hzau_Valencia_v1.0 ID=Cs6g18030.3_Hzau_Valencia_v1.0; Name=Cs6g18030.3; organism=Citrus sinensis; type=mRNA; length=2632bp back to top protein sequence of Cs6g18030.3
>Cs6g18030.3_Hzau_Valencia_v2.0-protein ID=Cs6g18030.3_Hzau_Valencia_v2.0-protein; Name=Cs6g18030.3; organism=Citrus sinensis; type=polypeptide; length=260bp back to top protein sequence of Cs6g18030.3_Hzau_Valencia_v1.0
>Cs6g18030.3_Hzau_Valencia_v1.0 ID=Cs6g18030.3_Hzau_Valencia_v1.0; Name=Cs6g18030.3_Hzau_Valencia_v1.0; organism=Citrus sinensis; type=polypeptide; length=260bp back to top mRNA from alignment at chr6:18326533..18331151-
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=4619bp; location=Sequence derived from: chr6:18326533..18331151- (Citrus sinensisAGCTAATTGAAATTCACCCTAAAATTTTATCCGAAGGTCCGATAGCTGTC
ACGTCATCCAATACCAAAAGGCGGTCAAAATTGAGAAGACGCCATTTGCC
AATCGTTGCTAAAACAGTCCACATAAAGTCCGTTCTGCGAAACGCATCGT
A ATGGCCGGATTCCGATTGCCGCCGGAAGAACCCGAGGTTTCGCCGCAAC
AGCCGCCGCAGCAGGTCCGCGTCGCGGGCGATCTAGTGTCTGACGACGAG
CGGTCAGTCGCTGCGGACTCGTGGTCAATAAAGAGCGAGTATGGAAGCAC
TCTCGACGATGATCAGCGCCACGCCGATGCCGCTGAGGCCCTCTCCTCCG
CCGCAAACTTCCGCGCTAATTCTGATTACAA TTCTGACAAGGAGGAGCCAGATCCAGAAGGGATGGCAT
CAATGTTAGGTCTTCAGAGTTACTGGGATTCTGCTTACGCAGATGAGTTG
GCTAATTTTCGTGAACATGGCCATGCTGGTGAAGTTTG GTTTGGAGCTGATGTCATGGATGTTGTTGCTTCTTGGACAA
AAAGCTTGTGCATTAGCATATCACAAGGTCACATGCTGAATCATGTTGAA
GATCTTAAGTCTGAGCCTGTGGAAGAGAATGATAAGTATTTGTCTTCTTG
GAGTGTACTTGATATTGGTACTGGCAATGGTCTGCTTCTTCAAGAACTTT
CCAAGCAGGG GTTCTCTGATTTAACTGGAGTTGATTATAGTGAAGATGCAATAAA
CCTTGCTCAAAGCCTTGCTAATCGTGATGGATTTTCCTGTATTAAATTTT
TGGTAATGAATATTTCGGTGCAAATATTGACTTATTTCATCTGTAAGTCA
GAAAGAAACGAGCACTATACATTTGATTTATATCAAATTGGTTACTATAT
ATCAAATGAATGCTTTCTTTTAAAATGA ATCATTCTTTTGTCCTTTTTCC
CCCTAGATGTTACAGTCAGATTTGTATCCTTGAATTAGATATTTGCTTAT
CTATGGGAATTTCGCCTTATTTCTTGAAACCTCCTGGTTTAACTTTATTT
TTTTTTAATATAAAGTTCATTTCTTGCATTTACATGATGACCATCTTGCA
TGTGAGTTGGCTATCCAAAACTTTTCTTTTTAGATAAATGTTGCCATTTT
CTTCTCTAAAGGTGTAACAAACTTGATCTTTGGTTAGAGCCAAGAATAAA
ACTTTCAAGTTGTTCCTGATAAGTTGAGGAGAACTGTGGGATGCTGATCT
TTTTGAGTTATAAGGCAAGAATATAATATCTGATGGTTTTGCTGAATTTA
GTTGTGTTCACAAACAGTGTGAACGAGTTCTCAGACTGTACGTTTTCAGT
ACTTATAACAAAATCGTTATCCTTTTGTATCCTAATCTTTTAGCAATTGC
TCAGTGAACATATGTATGATGGTCGTTTCATTTGAATTTCTGTCACTGCT
GGTTTTAGGTTGATGATGTTCTTGACACAAAGCTCGAAAGACAATTTCAG
CTTGTCATGGATAAAGGGACTTTAGATGCCATTGGACTGCATCCTGATGG
TCCTCTCAAAAG GATCATGTATTGGG
ATTCTGTTTCAAAGTTGGTGGCTCCTGGTGGATTATTG GTGATCACATCGTGTAACAGTACAAAAGATGAGTTGGTGCATGAAG
TGTCAAATTTAAGTCAAAGAAGGATTGGTGTGTCCCAGGAACATGAGATC
AAAGATGAAGAAGCATGCAGGGAGCCTCCATTCCGTTACCTTAATCATGT
TCGCACATACCCAACCTTCATGTTTGGTGGATCGGAGGGATCTCGTGTTG
CCACTGTGGCATTCCTTCGGAATTGAAATTATCTCATGTTGCCACTCGGG
CCTTTCTTTGGAATTGAAATCAATTAGCTATGTCTTGGGTGGATTGTAGT
TTTAGATTTTGTTGCAGATTCAGTTCATGTTTGTTGGCCTTCAAGAGAGT
GAGATAGTGGAAAACACACAACTTCTTGGCGATGATGAATTCATTGTATC
CTACAATTGAAAACATGTCTTTTCTGTTTTAAGCATATGTTACTGCATGA
CTTCTTGTTAAGTCAAGGATGCAATTTTTGGGTCAAGTAGGTGGAGTACG
GTTGAGATGGTTCAAGACCTTCATTGGAGTCACTTTCTTGACGAAAAATT
ATTGTGTACGGAATATTTTTCAACTATGATACCTTCATTTGTAAAGCTAA
ACACGCTTGCCGTTTAGAGGGATGTATTATTATTGATCATCATTCGCTTT
TCAAGTTGATCAAAGTCCAGAATCCAACCTCTGGTGGCGAAAACAAAAAA
TTAAAAGGTGATGGTCCAGGTGGGATCAACTAATTGAGACAGTTGTCGAG
CCAGGAGCAGGTGGTGGTCGCCGGTCCGTGAAGCCAGCCTCAGGCGGTGC
TCACTCTAGGAAGCATGAGCCTCCAGGCCTTTGACTTGGAACAGGCAATT
AATGATGGTATGTTTACCCAAAGCCAATAAATGATGTTCACACTTCACCA
AACGGTTAGAGTGAGAATGATAAATGAAAATAAAAATAAGTTGTTTATTT
GAATTATAGAAATATGAATCAAAACAGATTTTATGTTCATTCATGTGTTT
ATTTTATTTTGAAATGAAA back to top Coding sequence (CDS) from alignment at chr6:18326533..18331151-
>Cs6g18030.3_Hzau_Valencia_v1.0 ID=Cs6g18030.3_Hzau_Valencia_v1.0; Name=Cs6g18030.3; organism=Citrus sinensis; type=CDS; length=780bp; location=Sequence derived from: chr6:18326533..18331151- (Citrus sinensis back to top
