Cs6g20940.1, Cs6g20940.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis

Transcript Overview


Name	Cs6g20940.1
Unique Name	Cs6g20940.1_Hzau_Valencia_v1.0
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	1026

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis Valencia genome v1.0 (HZAU)	2013-01-22
C. sinensis v2.0, HZAU CDS	2018-06-07
C. sinensis v2.0 peptides	2018-06-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cscsiL107	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
csicsiL108	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
csicsiR147	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
cmcsiL339	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcsiL385	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csifhR525	Fortunella hindsii genome v1.0	Fortunella hindsii
csifhR567	Fortunella hindsii genome v1.0	Fortunella hindsii
csiptR372	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
csiptR374	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
csiptR387	Poncirus trifoliata genome v1.3.1 (JGI)	Poncirus trifoliata
clpcsiL346	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clpcsiL398	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
clpcsiL443	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon
csidvaR333	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
csidvbR352	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
csiswoR359	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
csiswR404	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
csiswR407	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis

Orthologs


Gene/Transcript	Assembly	Species
Cg6g024290.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
CL6G024605011.t1_pri	Citrus limon L. Burm f. genome v1.0 - Primary	Citrus limon

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
orange1.1g003465m.v1.1	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
Cs6g_pb019460.1	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
gene-KPL71_019328-mRNA2	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
gene-KPL70_019147-mRNA2	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cs6g20940	Cs6g20940_Hzau_Valencia_v1.0	Citrus sinensis	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g20940.1	Cs6g20940.1_Hzau_Valencia_v2.0-protein	Citrus sinensis	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g20940.1.exon.1	Cs6g20940.1.exon.1_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g20940.1.exon.2	Cs6g20940.1.exon.2_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g20940.1.exon.3	Cs6g20940.1.exon.3_Hzau_Valencia_v1.0	Citrus sinensis	exon
Cs6g20940.1.exon.4	Cs6g20940.1.exon.4_Hzau_Valencia_v1.0	Citrus sinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cs6g20940.1.cds.1	Cs6g20940.1.cds.1_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g20940.1.cds.2	Cs6g20940.1.cds.2_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g20940.1.cds.3	Cs6g20940.1.cds.3_Hzau_Valencia_v1.0	Citrus sinensis	CDS
Cs6g20940.1.cds.4	Cs6g20940.1.cds.4_Hzau_Valencia_v1.0	Citrus sinensis	CDS

Homology

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: IRK_ARATH (Probable LRR receptor-like serine/threonine-protein kinase IRK OS=Arabidopsis thaliana OX=3702 GN=IRK PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.834e-14
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE---FINRIMPADLVHNNLEEETPTTFGYSSPAPAPVT 396
            +  N+LTGPI ST   L  L+ ++   N+L+G IP   GG   L           G++PS I NCS L ++ LS+N L G+IP E+ K+  LE +DLS+N + GT+P+    +  +   ++ HN+L  E P    ++  +P+ V+
Sbjct:  407 LSRNSLTGPIPSTIGELKHLSVLDVSHNQLNGMIPRETGGAVSLEELRLENNLLEGNIPSSIKNCSSLRSLILSHNKLLGSIPPELAKLTRLEEVDLSFNELAGTLPKQLANLGYLHTFNISHNHLFGELPAGGIFNGLSPSSVS 551

HSP 2 Score: 62.3882 bits (150), Expect = 2.637e-9
Identity = 48/137 (35.04%), Postives = 67/137 (48.91%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFL-LTKLTYVNHQFNRLSGQIP----MTIGGL-------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINR---IMPADLVHNNLEEETPTTFG 366
            + +NNLTG I+    L L  L  V+   N LSG +P       G L       +KL+G +P  I +CS L  + LS+N   G++PL +  +  L  LDLS N + G  PE I+R   +   DL  N L    P+  G
Sbjct:  100 LSNNNLTGIINPNMLLSLVNLKVVDLSSNGLSGSLPDEFFRQCGSLRVLSLAKNKLTGKIPVSISSCSSLAALNLSSNGFSGSMPLGIWSLNTLRSLDLSRNELEGEFPEKIDRLNNLRALDLSRNRLSGPIPSEIG 236

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: PXC2_ARATH (Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana OX=3702 GN=PXC2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.458e-14
Identity = 50/155 (32.26%), Postives = 74/155 (47.74%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGL----------------------------------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP---EFINRIMPADLVHNNLEEETP 354
            +  N  TG + S  ++LT L  +N   N L G IP  IGGL                                  ++LSG +P++I NCS L  + LS N L G IP  +G +  LEY+DLS NN+ G++P   E ++ ++  ++ HNN+  E P
Sbjct:  392 LSSNGFTGELPSNIWILTSLLQLNMSTNSLFGSIPTGIGGLKVAEILDLSSNLLNGTLPSEIGGAVSLKQLHLHRNRLSGQIPAKISNCSALNTINLSENELSGAIPGSIGSLSNLEYIDLSRNNLSGSLPKEIEKLSHLLTFNISHNNITGELP 546

HSP 2 Score: 60.4622 bits (145), Expect = 9.382e-9
Identity = 55/165 (33.33%), Postives = 69/165 (41.82%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLS------------------------NNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP------EFINRIMPADLVHNNLEEETPTTFGYSS 375
            +  N L+G +    + L  L  ++   N L G IP  +GGL  L          SG VPS+IG CS L ++ LS                         NSL G IP  +G I  LE LDLS NN  GTVP      EF+  +   +L  N L  E P T    S
Sbjct:  172 LSSNQLSGRLPRDIWFLKSLKSLDFSHNFLQGDIPDGLGGLYDLRHINLSRNWFSGDVPSDIGRCSSLKSLDLSENYFSGNLPDSMKSLGSCSSIRLRGNSLIGEIPDWIGDIATLEILDLSANNFTGTVPFSLGNLEFLKDL---NLSANMLAGELPQTLSNCS 333

HSP 3 Score: 56.6102 bits (135), Expect = 1.966e-7
Identity = 62/211 (29.38%), Postives = 99/211 (46.92%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIP----MTIGGL-------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVHNNLEEETPTTFGYSSPAPAPVTVQAHGTLFLLRRKNKRAELTSGEIKSQDRDAFSIWNCDG-RIAFEEIIRATEDLISDIA-LE-LDVTA 591
            + +NNLTG ++     L  L  V+   N LSG+IP       G L       +KL+GS+P  +  CS L ++ LS+N L G +P ++  +  L+ LD S+N + G +P+ +  +   DL H NL         +S   P+ +     G    L+  +      SG +    +   S+ +C   R+    +I    D I DIA LE LD++A
Sbjct:   99 LSNNNLTGTLNPEFPHLGSLQVVDFSGNNLSGRIPDGFFEQCGSLRSVSLANNKLTGSIPVSLSYCSTLTHLNLSSNQLSGRLPRDIWFLKSLKSLDFSHNFLQGDIPDGLGGLY--DLRHINLSRNW-----FSGDVPSDI-----GRCSSLKSLDLSENYFSGNLPDSMK---SLGSCSSIRLRGNSLIGEIPDWIGDIATLEILDLSA 294

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: BAME3_ARATH (Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.844e-13
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE---FINRIMPADLVHNNLEEETPTTFGYS 372
            + +N L+GPI  +   L  L  +    NRLSGQIP  IG L  L          SG  P E G+C  L  + LS+N + G IP+++ +I  L YL++S+N+   ++P    ++  +  AD  HNN     PT+  +S
Sbjct:  473 LSNNRLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTSGQFS 609

HSP 2 Score: 70.0922 bits (170), Expect = 7.915e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1

Query:   49 LTKLTYVNHQFNRLSGQIPMTIG----------GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVH---NNLEEETPTTFGY 369
             + LT +N   NRLSG IP +I           G ++LSG +P EIG+   LL + +S N+  G  P E G  + L YLDLS+N I G +P  I++I   + ++   N+  +  P   GY
Sbjct:  465 FSSLTQINLSNNRLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGY 584

HSP 3 Score: 66.6254 bits (161), Expect = 1.121e-10
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 1

Query:    7 HNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINR---IMPADLVHNNLEEETPTTFG 366
            +N+  G I +    L  L +++     L G IP  +G L          ++L+GSVP E+GN + L  + LSNN L+G IPLE+  +  L+  +L +N + G +PEF++    +    L HNN   + P+  G
Sbjct:  232 YNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTGKIPSKLG 364

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana OX=3702 GN=RCH1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.358e-13
Identity = 47/134 (35.07%), Postives = 71/134 (52.99%), Query Frame = 1

Query:    4 GHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE---FINRIMPADLVHNNLEEETPTTFG 366
            G++ L+G I         L  +     ++SG +P+++G LSKL          SG +P E+GNCS L+N+ L +N L GT+P E+GK+  LE + L  NN+ G +PE   F+  +   DL  N      P +FG
Sbjct:  211 GNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFG 344

HSP 2 Score: 67.0106 bits (162), Expect = 8.540e-11
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1

Query:   49 LTKLTYVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPAD---LVHNNLEEETPTTFGYSS 375
            L +L  VN   NR++G+IP  IG L          + LSG VP EI NC  L  + LSNN+L G +PL +  +  L+ LD+S N++ G +P+ +  ++  +   L  N+   E P++ G+ +
Sbjct:  469 LVRLRLVN---NRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCT 587

HSP 3 Score: 65.4698 bits (158), Expect = 2.924e-10
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVHN 333
            +  NNL+GP+        +L  +N   N L G +P+++  L+KL          +G +P  +G+   L  + LS NS +G IP  +G    L+ LDLS NNI GT+PE +  I   D+  N
Sbjct:  498 LSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALN 618

HSP 4 Score: 55.4546 bits (132), Expect = 4.479e-7
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNN-IPGTVPEFI 300
            + + NLTG I S     ++L  ++   N L G+IP ++G L            L+G +P E+G+C  L N+ + +N L   +PLE+GKI  LE +    N+ + G +PE I
Sbjct:  113 ISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEI 223

HSP 5 Score: 55.0694 bits (131), Expect = 6.494e-7
Identity = 44/136 (32.35%), Postives = 64/136 (47.06%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINR---IMPADLVHNNLEEETPTTFGY 369
            +  NN+TG I S     TKL       N++SG IP  IG L          +KL G++P E+  C  L  + LS N L G++P  + ++  L  L L  N I G +P  I     ++   LV+N +  E P   G+
Sbjct:  354 LSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGF 489

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.593e-13
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIM---PADLVHNNLEEETPTTFG 366
            +  N L+GP+ ++   L  L Y++   NRLSG IP  IG ++ L           G VP+ +GNCS LL + + +N L+GTIPLE+ KI  L  LD+S N++ G++P+ I  +       L  N L  + P T G
Sbjct:  392 LDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLG 526

HSP 2 Score: 64.3142 bits (155), Expect = 7.160e-10
Identity = 40/112 (35.71%), Postives = 56/112 (50.00%), Query Frame = 1

Query:   82 NRLSGQIPMTIGGLSK-----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIM---PADLVHNNLEEETPTTFGYSS 375
            NRL G +P++I  LS            +SGS+P +IGN   L  + L  N L G +P  +GK++ L YL L  N + G +P FI  +      DL +N  E   PT+ G  S
Sbjct:  346 NRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCS 457

HSP 3 Score: 61.2326 bits (147), Expect = 5.859e-9
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 1

Query:   49 LTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI---NRIMPADLVHNNLEEETP 354
            L++L Y++   N L G IP+ +   S+L           GSVPSE+G+ + L+ + L  N++ G +P  +G +  LE L LS+NN+ G +P  +    +I    LV NN     P
Sbjct:  113 LSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFP 227

HSP 4 Score: 59.3066 bits (142), Expect = 2.915e-8
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPAD---LVHNNLEEETPT 357
            +G   L G I  +   L+ L  ++   N   G IP  +G LS+L           G +P  + NCS LLN+ L +N L G++P E+G +  L  L+L  NN+ G +P  +  +   +   L HNNLE E P+
Sbjct:   73 LGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPS 204

HSP 5 Score: 55.0694 bits (131), Expect = 5.080e-7
Identity = 42/130 (32.31%), Postives = 56/130 (43.08%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNC-----------------------SGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 291
            +G N L G I      + +L  ++   N L G +P  IG L          +KLSG +P  +GNC                        G+  V LSNN L G+IP        LEYL+LS+NN+ G VP
Sbjct:  464 IGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKGLVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVP 593

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana OX=3702 GN=GSO2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.769e-13
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGG-----------LSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPAD---LVHNNLEEETPTTFGY 369
            +  NNLTG IH   + + +L ++    NRLSG +P TI              ++LSG +P+EI NC  L  + LSNN+L G IP  + +++ L  L L+ N++ GT+   I+ +       L HNNLE + P   G+
Sbjct:  295 LSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGF 431

HSP 2 Score: 64.6994 bits (156), Expect = 5.543e-10
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI---NRIMPADLVHNNLEEETPTTFGY 369
            + +N+L G + S+   LT L       N L G++P  IG L KL          SG +P EIGNC+ L  +    N L G IP  +G++  L  L L  N + G +P  +   +++   DL  N L    P++FG+
Sbjct:  392 LNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGF 527

HSP 3 Score: 62.3882 bits (150), Expect = 2.824e-9
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 1

Query:   10 NNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLE-YLDLSYNNIPGTVPEFIN---RIMPADLVHNNLEEETPTTFG 366
            N+L G I      L  L  +N + N+LSG +P TIG LSK              L  + LS N+L G IP+E+G++  L+  LDLSYNN  G +P  I+   ++   DL HN L  E P   G
Sbjct:  706 NSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSK--------------LFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIG 814

HSP 4 Score: 61.6178 bits (148), Expect = 5.091e-9
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 1

Query:    7 HNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL-----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPADLVHN 333
             N L+GP+ ST   L+KL  +    N L+G+IP+ IG L  L           +G +PS I     L ++ LS+N L G +P ++G +  L YL+LSYNN+ G + +  +R      V N
Sbjct:  729 ENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAFVGN 848

HSP 5 Score: 61.6178 bits (148), Expect = 5.182e-9
Identity = 45/135 (33.33%), Postives = 69/135 (51.11%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI---NRIMPADLVHNNLEEETPTTFG 366
            +  N+L+G I     L  KLT+++   N LSG IP  +G L          +K  GS+P+EI + + +L + L  NSL+G+IP E+G +  L  L+L  N + G +P  I   +++    L  N L  E P   G
Sbjct:  631 ISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIG 765

HSP 6 Score: 61.2326 bits (147), Expect = 7.273e-9
Identity = 82/300 (27.33%), Postives = 123/300 (41.00%), Query Frame = 1

Query:   82 NRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI---NRIMPADLVHNNLEEETPTTFGYSSP------------APAPVTVQAHGTLFLLRRKNKRAELTSGEI-----KSQDRDA---FSIWNCDGRI--------AFEEIIRATEDLISDIALELDVTAAFTKHGCLVAEYGSEQGRSAFFKSFQN-EAHAFFGNFGVARLLNSDSSNRTLIAGTYRYIAPDQRISPPKKQKIVQDIALASIVALACL 855
            N+ +G+IP T G +S+LS          G +P E+G C  L ++ L+NN L G IP  +GK+  L  L LS N   G++P  I     I+   L  N+L    P   G                 P P T+     LF LR    R  LT GEI     + QD  +    S  N  GRI          E +  +   L+ ++  ++    +    G L   Y + +G+    K F   +A AF GN G+           + ++   R  + +QR   PK   I+  I+  + +AL  L
Sbjct:  610 NQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRL--SRNALT-GEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSL---GYLNLSYNNLEGK--LKKQFSRWQADAFVGNAGLC---------GSPLSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVL 892

HSP 7 Score: 55.4546 bits (132), Expect = 4.065e-7
Identity = 39/121 (32.23%), Postives = 61/121 (50.41%), Query Frame = 1

Query:   16 LTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIG----------GLSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINR---IMPADLVHNNL 339
            LTG I S    L +L  +  Q N L G IP  IG            ++L+GS+P+E+     L  + L +NS  G IP ++G ++ ++YL+L  N + G +P+ +     +   DL  NNL
Sbjct:  180 LTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNL 300

HSP 8 Score: 55.0694 bits (131), Expect = 5.999e-7
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 1

Query:   52 TKLTYVNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE 294
            T+L  ++   NRLSG+IP +IG L  L+          G++P+ +GNC  +  + L++N L G+IP   G +  LE   +  N++ G +P+
Sbjct:  457 TRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPD 547

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: XA21_ORYSI (Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.431e-12
Identity = 52/150 (34.67%), Postives = 79/150 (52.67%), Query Frame = 1

Query:   10 NNLTGPIHSTPFLLTKLT-YVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEF---INRIMPADLVHNNLEEETPTTFGYSSPAPAPVTVQAHGTL 417
            NNL+GPI S  F +  L+  +N   N L G IP  IG L          ++LSG +P+ +G+C  L  + L NN L G+IP  +G++  LE LDLS NN+ G +P     I  +   +L  N+   E PT   ++  A + +++Q +  L
Sbjct:  482 NNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFA--AASGISIQGNAKL 629

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: Y2241_ARATH (Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana OX=3702 GN=At2g24130 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.923e-12
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 1

Query:   22 GPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 291
            GPI      L+KL  V    N L+G+IPM +G + +L          SGS+P   GN S L  + L  N L GT+P  +GK I LE LDLS+NN+ GT+P
Sbjct:  335 GPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIP 434

HSP 2 Score: 64.6994 bits (156), Expect = 5.190e-10
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 1

Query:    1 MGHNNLTG--PIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGL----------SKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 291
            + HNNLTG  P+     L     Y+N   N LSG IP+ +  +          ++LSG +P ++G+C  L ++ LS N    T+P  +G++ +L+ LD+S+N + G +P
Sbjct:  424 LSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIP 532

HSP 3 Score: 59.3066 bits (142), Expect = 2.532e-8
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKII--FLEYLDLSYNNIPGTVP---EFINRIMPADLVHNNLEEETPTTFG 366
            + +N+LTG I      + +L  ++   N LSG IP + G LS+L          SG+VP  +G C  L  + LS+N+L GTIP+E+   +     YL+LS N++ G +P     ++ ++  DL  N L  + P   G
Sbjct:  352 LSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLG 488

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana OX=3702 GN=GSO1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.272e-12
Identity = 49/122 (40.16%), Postives = 65/122 (53.28%), Query Frame = 1

Query:   43 FLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLE-YLDLSYNNIPGTVPEFI---NRIMPADLVHNNLEEETPTTFG 366
            F  TKL  ++   N L+G IP  IG L  L          SGS+P  +G  S L  + LS NSL G IP+E+G++  L+  LDLSYNN  G +P  I   +++   DL HN L  E P + G
Sbjct:  692 FNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVG 813

HSP 2 Score: 69.707 bits (169), Expect = 1.292e-11
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKLSG----------SVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEF---INRIMPADLVHNNLEEETPTTFG 366
            M  N LTG I     L  KLT+++   N LSG IP  +G LS+L            S+P+E+ NC+ LL ++L  NSL+G+IP E+G +  L  L+L  N   G++P+    ++++    L  N+L  E P   G
Sbjct:  630 MSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIG 764

HSP 3 Score: 65.0846 bits (157), Expect = 3.294e-10
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 1

Query:   16 LTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKLS----------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEF---INRIMPADLVHNNLEEETPTTF 363
            LTGPI S    L ++  +  Q N L G IP  +G  S L+          G++P+E+G    L  + L+NNSL G IP ++G++  L+YL L  N + G +P+    +  +   DL  NNL  E P  F
Sbjct:  179 LTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEF 307

HSP 4 Score: 63.1586 bits (152), Expect = 1.608e-9
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSK----------LSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP 291
            +G N L G I  T   L  L  +     RL+G IP  +G L +          L G +P+E+GNCS L   T + N L+GTIP E+G++  LE L+L+ N++ G +P
Sbjct:  150 IGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP 256

HSP 5 Score: 62.003 bits (149), Expect = 3.199e-9
Identity = 43/135 (31.85%), Postives = 66/135 (48.89%), Query Frame = 1

Query:    7 HNN-LTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI---NRIMPADLVHNNLEEETPTTFGY 369
            HNN L G +  +   LT L ++    N L G++P  I  L KL          SG +P EIGNC+ L  + +  N  +G IP  +G++  L  L L  N + G +P  +   +++   DL  N L    P++FG+
Sbjct:  392 HNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGF 526

HSP 6 Score: 56.9954 bits (136), Expect = 1.632e-7
Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL-----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPAD 321
            +  N  +G +      L+KL  +    N L+G+IP+ IG L  L           +G +PS IG  S L  + LS+N L G +P  +G +  L YL++S+NN+ G + +  +R  PAD
Sbjct:  726 LDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSR-WPAD 842

HSP 7 Score: 55.8398 bits (133), Expect = 3.344e-7
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1

Query:   10 NNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGG-----------LSKLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINRIMPAD---LVHNNLEEETP 354
            NNLTG I    + +++L  +    N LSG +P +I              ++LSG +P E+  C  L  + LSNNSL G+IP  + +++ L  L L  N + GT+   I+ +       L HNNLE + P
Sbjct:  297 NNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLP 425

HSP 8 Score: 55.8398 bits (133), Expect = 3.922e-7
Identity = 44/132 (33.33%), Postives = 60/132 (45.45%), Query Frame = 1

Query:    7 HNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKLS---------GSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVP---EFINRIMPADLVHNNLEEETPTTFG 366
            +N+L G +  +   L  LT +N   NRL+G I    G  S LS           +P E+GN   L  + L  N L G IP  +GKI  L  LD+S N + GT+P       ++   DL +N L    P   G
Sbjct:  537 NNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG 668

[Close]

BLAST of Cs6g20940.1 vs. DB:SwissProt
Match: BAME2_ARATH (Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana OX=3702 GN=BAM2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.680e-12
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLS-----------KLSGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFINR---IMPADLVHNNLEEETP 354
            MG N L G I    F L KL+ V  Q N L+G++P++ GG+S           +LSGS+P+ IGN SG+  + L  N   G+IP E+G++  L  LD S+N   G +   I+R   +   DL  N L  + P
Sbjct:  414 MGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIP 545

HSP 2 Score: 57.7658 bits (138), Expect = 8.919e-8
Identity = 45/135 (33.33%), Postives = 64/135 (47.41%), Query Frame = 1

Query:    1 MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKL-----------SGSVPSEIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPE---FINRIMPADLVHNNLEEETPTTF 363
            +G N  +G I +T      L Y+    N L+G+IP  IG L+ L              +P EIGN S L+    +N  L G IP E+GK+  L+ L L  N   GT+ +    I+ +   DL +N    E PT+F
Sbjct:  173 LGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSF 307

The following BLAST results are available for this feature:

BLAST of Cs6g20940.1 vs. DB:SwissProt

BLAST of Cs6g20940.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS)
Total hits: 10

Position :

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x 1


Match Name	E-value	Identity	Description
IRK_ARATH	1.834e-14	35.17	Probable LRR receptor-like serine/threonine-protei...	[more]
PXC2_ARATH	2.458e-14	32.26	Leucine-rich repeat receptor-like protein kinase P...	[more]
BAME3_ARATH	2.844e-13	34.31	Leucine-rich repeat receptor-like serine/threonine...	[more]
RCH1_ARATH	4.358e-13	35.07	LRR receptor-like serine/threonine-protein kinase ...	[more]
Y3475_ARATH	6.593e-13	37.04	Probable LRR receptor-like serine/threonine-protei...	[more]
GSO2_ARATH	6.769e-13	35.04	LRR receptor-like serine/threonine-protein kinase ...	[more]
XA21_ORYSI	1.431e-12	34.67	Receptor kinase-like protein Xa21 OS=Oryza sativa ...	[more]
Y2241_ARATH	1.923e-12	43.00	Putative leucine-rich repeat receptor-like serine/...	[more]
GSO1_ARATH	3.272e-12	40.16	LRR receptor-like serine/threonine-protein kinase ...	[more]
BAME2_ARATH	3.680e-12	37.12	Leucine-rich repeat receptor-like serine/threonine...	[more]

InterPro

Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 44..107 e-value: 4.2E-15 score: 57.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 1..43 e-value: 5.0E-6 score: 28.0
None	No IPR available	PANTHER	PTHR45465	FAMILY NOT NAMED	coord: 139..185 coord: 224..259 coord: 259..327 coord: 3..121
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 2..122
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 225..265

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:20231412..20233056+
coding sequence from alignment at chr6:20231412..20233056+

mRNA sequence

>Cs6g20940.1_Hzau_Valencia_v1.0 ID=Cs6g20940.1_Hzau_Valencia_v1.0; Name=Cs6g20940.1; organism=Citrus sinensis; type=mRNA; length=1026bp
ATGGGGCATAACAACCTTACTGGACCTATTCATTCCACTCCTTTTCTTTT
AACCAAGCTGACGTACGTAAACCATCAATTTAATCGACTTTCTGGCCAAA
TACCAATGACGATTGGAGGCCTTTCCAAACTTAGTGGTTCAGTTCCATCA
GAGATAGGCAATTGCTCCGGGTTGCTGAATGTAACCTTGAGCAACAACAG
TTTAGACGGAACCATTCCTCTAGAGATGGGTAAGATTATATTCTTAGAAT
ACTTGGATCTTTCCTATAATAACATTCCTGGTACAGTCCCTGAATTTATT
AATAGAATAATGCCCGCAGACTTAGTACATAATAATTTGGAGGAAGAAAC
TCCTACTACTTTTGGATATTCATCCCCTGCGCCTGCACCTGTCACTGTCC
AAGCTCATGGAACCTTGTTTCTTCTTAGACGTAAGAACAAAAGAGCTGAG
CTCACGTCAGGAGAAATCAAGAGTCAAGACAGAGATGCTTTCTCAATATG
GAATTGTGATGGTAGAATTGCATTTGAAGAAATAATTAGAGCAACAGAGG
ATTTGATATCAGATATTGCATTGGAGCTGGATGTTACGGCAGCGTTTACA
AAGCACGGCTGCCTAGTGGCAGAATATGGTTCAGAACAGGGGAGATCTGC
TTTCTTCAAAAGTTTCCAGAATGAAGCGCATGCATTTTTTGGTAATTTTG
GCGTGGCTAGGCTTCTGAATTCCGACTCATCCAATAGAACTCTAATAGCA
GGCACTTACAGATACATTGCTCCAGACCAACGTATATCACCTCCAAAGAA
GCAAAAGATTGTTCAGGATATTGCTCTTGCTTCAATAGTTGCTCTTGCGT
GCTTGCAGTCCAAACCCAAGTCTGTACCTACAATGCAACGTGTGTCTCAA
GAATTTCTTGTCCGGAAAACACCATTGGAACGACCTGCTCTTGAAGAAAT
TTCCATATCTGGACTTAGAAACCAGGGGATGTATTTGATTGATCACATCG
ATGGATTTAATCAAGGAACAAAATGA

protein sequence of Cs6g20940.1

>Cs6g20940.1_Hzau_Valencia_v2.0-protein ID=Cs6g20940.1_Hzau_Valencia_v2.0-protein; Name=Cs6g20940.1; organism=Citrus sinensis; type=polypeptide; length=342bp
MGHNNLTGPIHSTPFLLTKLTYVNHQFNRLSGQIPMTIGGLSKLSGSVPS
EIGNCSGLLNVTLSNNSLDGTIPLEMGKIIFLEYLDLSYNNIPGTVPEFI
NRIMPADLVHNNLEEETPTTFGYSSPAPAPVTVQAHGTLFLLRRKNKRAE
LTSGEIKSQDRDAFSIWNCDGRIAFEEIIRATEDLISDIALELDVTAAFT
KHGCLVAEYGSEQGRSAFFKSFQNEAHAFFGNFGVARLLNSDSSNRTLIA
GTYRYIAPDQRISPPKKQKIVQDIALASIVALACLQSKPKSVPTMQRVSQ
EFLVRKTPLERPALEEISISGLRNQGMYLIDHIDGFNQGTK*

mRNA from alignment at chr6:20231412..20233056+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1645bp; location=Sequence derived from: chr6:20231412..20233056+ (Citrus sinensis
ATGGGGCATAACAACCTTACTGGACCTATTCATTCCACTCCTTTTCTTTT
AACCAAGCTGACGTACGTAAACCATCAATTTAATCGACTTTCTGGCCAAA
TACCAATGACGATTGGAGGCCTTTCCAAACTTAGTGGTTCAGTTCCATCA
GAGATAGGCAATTGCTCCGGGTTGCTGAATGTAACCTTGAGCAACAACAG
TTTAGACGGAACCATTCCTCTAGAGATGGGTAAGATTATATTCTTAGAAT
ACTTGGATCTTTCCTATAATAACATTCCTGGTACAGTCCCTGAATTTATT
AATAGAATAATGCCCGCAGACTTAGTACATAATAATTTGGAGGAAGAAAC
TCCTACTACTTTTGGATATTCATCCCCTGCGCCTGCACCTGTCACTGTCC
AAGGTACCGATGATTAATTTCAGTATTTCTCCTACACCATCACCTGCATC
TCCACAACAGGAACCCAATAAGGTAATGATCCTCTTGATTTCAATTATTT
TTCCAATCGCGGCATTTGTCGCCTTCTTAGCTCATGGAACCTTGTTTCTT
CTTAGACGTAAGAACAAAAGAGCTGAGCTCACGTCAGGAGAAATCAAGAG
TCAAGACAGAGATGCTTTCTCAATATGGAATTGTGATGGTAGAATTGCAT
TTGAAGAAATAATTAGAGCAACAGAGGATTTGATATCAGATATTGCATTG
GAGCTGGATGTTACGGCAGCGTTTACAAAGCACGGCTGCCTAGTGGCAGA
ATATGGTTCAGAACAGGGGAGATCTGCTTTCTTCAAAAGTTTCCAGAATG
AAGCGCATGTATTGTTTTTGTTTGCACAAAAGATACATGTTTTTGATTTG
TCAGTACATGGAGTGGGGAAGCTTGTTTTGTGTTTTGCTCAATGATGATT
AAGCTATGGAGTTGGATTGGACTACGTGGGTGAATATCCTCAGGCGTGTG
GCACACGCTTTGGCTTACTTCCATCATGACTGCTGACCATCAATTGTCCA
CCGTGACATTTCAAGTAACAACATTTTGTTAAACTCAGAATTTGAGGCAT
TTTTTGGTAATTTTGGCGTGGCTAGGCTTCTGAATTCCGACTCATCCAAT
AGAACTCTAATAGCAGGCACTTACAGATACATTGCTCCAGGTGAACTAGT
TCTTGTTATATCTTTCTTGTTTTCTTCATTTTCAACGACACCTACAATAA
TTAAACTTATATATATTTCTTTAAACTTTTGTTTTGATGTTGAACATGCC
TACACCATGGTTATGACAGAGAAATGTGATGTTTACAGCTTTGGTGCGGT
GACACTTGAATACTAATAGCAAAGCATCCCCAAGAAATCCTCTCTTTGTT
TTCATCAACATCTGATCCACATATAACGTTAACCTATATATTAGACCAAC
GTATATCACCTCCAAAGAAGCAAAAGATTGTTCAGGATATTGCTCTTGCT
TCAATAGTTGCTCTTGCGTGCTTGCAGTCCAAACCCAAGTCTGTACCTAC
AATGCAACGTGTGTCTCAAGAATTTCTTGTCCGGAAAACACCATTGGAAC
GACCTGCTCTTGAAGAAATTTCCATATCTGGACTTAGAAACCAGGGGATG
TATTTGATTGATCACATCGATGGATTTAATCAAGGAACAAAATGA

Coding sequence (CDS) from alignment at chr6:20231412..20233056+

>Cs6g20940.1_Hzau_Valencia_v1.0 ID=Cs6g20940.1_Hzau_Valencia_v1.0; Name=Cs6g20940.1; organism=Citrus sinensis; type=CDS; length=1026bp; location=Sequence derived from: chr6:20231412..20233056+ (Citrus sinensis
ATGGGGCATAACAACCTTACTGGACCTATTCATTCCACTCCTTTTCTTTT
AACCAAGCTGACGTACGTAAACCATCAATTTAATCGACTTTCTGGCCAAA
TACCAATGACGATTGGAGGCCTTTCCAAACTTAGTGGTTCAGTTCCATCA
GAGATAGGCAATTGCTCCGGGTTGCTGAATGTAACCTTGAGCAACAACAG
TTTAGACGGAACCATTCCTCTAGAGATGGGTAAGATTATATTCTTAGAAT
ACTTGGATCTTTCCTATAATAACATTCCTGGTACAGTCCCTGAATTTATT
AATAGAATAATGCCCGCAGACTTAGTACATAATAATTTGGAGGAAGAAAC
TCCTACTACTTTTGGATATTCATCCCCTGCGCCTGCACCTGTCACTGTCC
AAGCTCATGGAACCTTGTTTCTTCTTAGACGTAAGAACAAAAGAGCTGAG
CTCACGTCAGGAGAAATCAAGAGTCAAGACAGAGATGCTTTCTCAATATG
GAATTGTGATGGTAGAATTGCATTTGAAGAAATAATTAGAGCAACAGAGG
ATTTGATATCAGATATTGCATTGGAGCTGGATGTTACGGCAGCGTTTACA
AAGCACGGCTGCCTAGTGGCAGAATATGGTTCAGAACAGGGGAGATCTGC
TTTCTTCAAAAGTTTCCAGAATGAAGCGCATGCATTTTTTGGTAATTTTG
GCGTGGCTAGGCTTCTGAATTCCGACTCATCCAATAGAACTCTAATAGCA
GGCACTTACAGATACATTGCTCCAGACCAACGTATATCACCTCCAAAGAA
GCAAAAGATTGTTCAGGATATTGCTCTTGCTTCAATAGTTGCTCTTGCGT
GCTTGCAGTCCAAACCCAAGTCTGTACCTACAATGCAACGTGTGTCTCAA
GAATTTCTTGTCCGGAAAACACCATTGGAACGACCTGCTCTTGAAGAAAT
TTCCATATCTGGACTTAGAAACCAGGGGATGTATTTGATTGATCACATCG
ATGGATTTAATCAAGGAACAAAATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR011009	Kinase-like_dom_sf