Cs6g21400.1, Cs6g21400.1_Hzau_Valencia_v2.0 (mRNA) Citrus sinensis
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: CDF2_ARATH (Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2) HSP 1 Score: 330.872 bits (847), Expect = 1.627e-107 Identity = 234/524 (44.66%), Postives = 291/524 (55.53%), Query Frame = 1 Query: 16 DQGIKLFGRTIPLPEV------TPSVGAAPSVDDRIDQDPTCSTNSSRESDKSRDGEERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGS------TSGISENPKALPVXXXXXXXXXXXXXXXXXXXXXXXXXXLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHY-RHITVS--EALQNV-RTDV--PNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVPVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAP--WPYPWNSAQWS--PPVTPPAILXXXXXXXXXXXXXXWGC--TVPGAWN-IPWIPQPTSPKTPSSAPNSPTLGKHSREESLVK------ASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDK-ADSIGRGGLFKAFQQKND--GRGHIAGTSPVLQANPAALSRSLNFQESS 1485
D IKLFG+TIPLPE+ + G + +C+ + E + + ET +++E E EES S TSGI+E + K +KT EE + SQE LKKPDKILPCPRCNSM+TKFCYYNNYNVNQPRHFCK CQRYWTAGGTMRNVPVGAGRRKNK+ ASHY RH++++ EA+Q V RTD+ PNG + +LTFGSD+ LCESMAS LN+ +K++ T+ +P E +++T VP++ + +EAG + P V CFPG P WPY WN W+ P PPA W C PGAWN W+PQP SP S PNSPTLGKHSR+E+ + + S G+E+ K ERCLWVPKTLRIDDP +AAKSSIW TLGIK D+ AD+ G F++ ++ G + G P LQANPAALSRS NF ESS
Sbjct: 3 DPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGREEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTET---------TKAAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPASHYNRHVSITSAEAMQKVARTDLQHPNGAN---------LLTFGSDSVLCESMASGLNLVEKSLLK-TQTVLQEPNE-GLKIT---------------VPLNQTNEEAGTVSPL-----------PKVPCFPGPPPTWPYAWNGVSWTILPFYPPPAY---------------WSCPGVSPGAWNSFTWMPQPNSPS--GSNPNSPTLGKHSRDENAAEPGTAFDETESLGREKSK---PERCLWVPKTLRIDDPEEAAKSSIWETLGIKKDENADTF---GAFRSSTKEKSSLSEGRLPGRRPELQANPAALSRSANFHESS 457
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: CDF3_ARATH (Cyclic dof factor 3 OS=Arabidopsis thaliana OX=3702 GN=CDF3 PE=1 SV=2) HSP 1 Score: 299.671 bits (766), Expect = 1.518e-95 Identity = 219/524 (41.79%), Postives = 271/524 (51.72%), Query Frame = 1 Query: 1 MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQDPTCSTNSSRE------SDKSRDG-----------EERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKALPVXXXXXXXXXXXXXXXXXXXXXXXXXXLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAP---LCESMASVLNIA-DKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVPVSNSKDEAGKTTSQEAVVQNCQGFPPH------VACFPGAPWPYPWNSAQWSPPVTPPAILXXXXXXXXXXXXXXWGCTVPGAWNIPWIP--QPTSPKTPS-SAPNSPTLGKHSREESLVKASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGH-IAGTSPVLQANPAALSRSLNFQE 1479
M E +D IKLFG IP P V S A +V+D + D + + S E SDK+ + E D E+ S D+ E PE+++++T G T LKKP KILPCPRC SM+TKFCYYNNYN+NQPRHFCK CQRYWTAGGTMRNVPVGAGRRKNK+S+SHYRHIT+SEAL+ R D P L+ N VL+FG +A + M V+ + D+ + N RN FH + R+ ENGD+ + GS V SN+ ++ +Q V Q + AC PG PWPY WN PA+ PPGF P P ++ W IP +P Q +SP + S NSPTLGKH R+E K N ++Q C+ VPKTLRIDDP +AAKSSIWTTLGIKN+ GG+FK F K + A SPVL ANPAALSRS NF E
Sbjct: 2 MMETRDPAIKLFGMKIPFPSVFES---AVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSFNNSKPETLDKEEATSTDQ-----IESSDTPEDNQQTTPDGKT--------------------------------------LKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITISEALEAARLD-------PGLQANTRVLSFGLEAQQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARV---ENGDDCSSGSSVTTSNNH-SVDESRAQSGSVVEAQMNNNNNNNMNGYACIPGVPWPYTWN----------PAMPPPGFYPPPGYPMPFY-----PYWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNETERKQKA-----GCVLVPKTLRIDDPNEAAKSSIWTTLGIKNEAM--CKAGGMFKGFDHKTKMYNNDKAENSPVLSANPAALSRSHNFHE 446
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: CDF1_ARATH (Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 1.104e-62 Identity = 147/368 (39.95%), Postives = 181/368 (49.18%), Query Frame = 1 Query: 391 LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA--SHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVPVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILXXXXXXXXXXXXXXWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGR---GHIAGTSPVLQANPAALSRSLNFQE 1479
LKKP KILPCPRCNSM+TKFCYYNNYNVNQPRHFCK CQRYWT+GGTMR+VP+GAGRRKNKN++ SHY H+T+SE TNG VL+F + D + R G K L R+ + +N ++G + CFPG WPY WN A + PV P W++ +P S+ + TLGKHSR+E E +Q + N + + VPKTLRIDDP +AAKSSIWTTLGIKN+ +F F K + + TS VL ANPAALSRS+NF E
Sbjct: 47 LKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISE-------------------TNGPVLSFS--------------LGDDQKVSSNRFGNQK---LVARIENNDERSNNNTSNG-------------------------------LNCFPGVSWPYTWNPAFY--PVYP-------------------------YWSM------PVLSSPVSSSPTSTLGKHSRDE-------DETVKQKQRNGS---VLVPKTLRIDDPNEAAKSSIWTTLGIKNEV--------MFNGFGSKKEVKLSNKEETETSLVLCANPAALSRSINFHE 296
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: CDF5_ARATH (Cyclic dof factor 5 OS=Arabidopsis thaliana OX=3702 GN=CDF5 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.203e-47 Identity = 139/372 (37.37%), Postives = 184/372 (49.46%), Query Frame = 1 Query: 391 LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKN--SASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVPVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFP--GAPWPYPWNSAQWSPPVTPPAILXXXXXXXXXXXXXXWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSEGQ--EQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQK-NDGRGHIAG-TSPVLQANPAALSRSLNFQES 1482
LKKPDK++PCPRC S +TKFCYYNNYNVNQPR+FC+NCQRYWTAGG+MRNVPVG+GRRKNK S++HY +T + N +GT+L+FGS S +SV T G H ++GD + + + SQE ++ QGF P P +PWPY W+ P P A YP YWGCTVP PTS S LGK SR++ +EG+ + + R V ++LR++ +A+KS++W+ L K +K LF F K N R + TS LQANPAA+SR++NF+ES
Sbjct: 125 LKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGWPSSNHYLQVTSEDCDNN---------------NSGTILSFGS------SESSV-----------TETGKH--------------QSGD------------TAKISADSVSQEN--KSYQGFLPPQVMLPNNSSPWPYQWS------PTGPNASF--------YPVPFYWGCTVP--------IYPTS-------ETSSCLGKRSRDQ-------TEGRINDTNTTITTTRARLVSESLRMNI--EASKSAVWSKLPTKPEKKTQ--GFSLFNGFDTKGNSNRSSLVSETSHSLQANPAAMSRAMNFRES 396
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: DOF13_ARATH (Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana OX=3702 GN=DOF1.3 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.987e-35 Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 1 Query: 391 LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKN--SASHYRHIT 603
LKKPDKILPCPRCNS DTKFCYYNNYNVNQPRHFC+ CQRYWTAGG+MR VPVG+GRRKNK S+ Y HIT
Sbjct: 98 LKKPDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNKGWVSSDQYLHIT 170
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: DOF15_ARATH (Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana OX=3702 GN=DOF1.5 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.267e-32 Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 Query: 394 KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 573
K+PDKI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK+K
Sbjct: 56 KRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: CDF4_ARATH (Cyclic dof factor 4 OS=Arabidopsis thaliana OX=3702 GN=CDF4 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.334e-31 Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 1 Query: 394 KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 573
K+PDKI+ CPRC SM+TKFCY+NNYNVNQPRHFCK C RYWTAGG +RNVPVGAGRRK+K
Sbjct: 52 KRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSK 111
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: DOF5_ORYSJ (Dof zinc finger protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF5 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.848e-27 Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1 Query: 412 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 573
LPCPRC S DTKFCY+NNYNVNQPRHFCK C RYWTAGG +RNVPVGAGRRKN+
Sbjct: 109 LPCPRCRSRDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKNR 162
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 2.273e-24 Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 Query: 412 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAS 585
L CPRCNS++TKFCYYNNYN++QPRHFCKNC+RYWT GG +RNVPVG G RK K S +
Sbjct: 51 LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKT 108
BLAST of Cs6g21400.1 vs. DB:SwissProt
Match: DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana OX=3702 GN=DOF1.7 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 8.406e-24 Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1 Query: 412 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRK-NKNS----ASHYRHITVSE 612
L CPRC+S +TKFCYYNNYN++QPRHFCKNC+RYWT GG +RN+PVG G RK NK S +S+ ++ TV+E
Sbjct: 33 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSNKRSGSSPSSNLKNQTVAE 104 The following BLAST results are available for this feature:
BLAST of Cs6g21400.1 vs. DB:SwissProt
Analysis Date: 2018-06-07 (C. sinensis v2.0, HZAU CDS) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: C. sinensis v2.0 peptides
Date Performed: 2018-06-21 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cs6g21400.1_Hzau_Valencia_v1.0 ID=Cs6g21400.1_Hzau_Valencia_v1.0; Name=Cs6g21400.1; organism=Citrus sinensis; type=mRNA; length=2127bpback to top protein sequence of Cs6g21400.1 >Cs6g21400.1_Hzau_Valencia_v2.0-protein ID=Cs6g21400.1_Hzau_Valencia_v2.0-protein; Name=Cs6g21400.1; organism=Citrus sinensis; type=polypeptide; length=496bpback to top mRNA from alignment at chr6:20556108..20559143+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3036bp; location=Sequence derived from: chr6:20556108..20559143+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at chr6:20556108..20559143+ >Cs6g21400.1_Hzau_Valencia_v1.0 ID=Cs6g21400.1_Hzau_Valencia_v1.0; Name=Cs6g21400.1; organism=Citrus sinensis; type=CDS; length=1488bp; location=Sequence derived from: chr6:20556108..20559143+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|