Citrus aurantifolia transcriptome-HLB infected leaves

Overview
Analysis NameCitrus aurantifolia transcriptome-HLB infected leaves
MethodTruSeq, Illumina (TransFlow)
SourcePRJNA574168
Date performed2020-03-03

This data is from Arce-Leal ÁP, Bautista R, Rodríguez-Negrete EA, Manzanilla-Ramírez MÁ, Velázquez-Monreal JJ, Méndez-Lozano J, Bejarano ER, Castillo AG, Claros MG, Leyva-López NE. De novo assembly and functional annotation of Citrus aurantifolia transcriptome from Candidatus Liberibacter asiaticus infected and non-infected trees. Data in brief. 2020 Apr; 29:105198.  The data used for the transcriptome assembly and expression experiment are under NCBI BioProject PRJNA574168.  Expression values are read counts.

Expression Data BioSamples, each sample was analyzed with two software (DESeq2 and EdgeR):

Sample Tissue Treatment
Healthy_8WPI_C_aurantifolia_1-DESeq2 Leaves Mock-inoculated 8 WPI 1
Healthy_8WPI_C_aurantifolia_1-EdgeR Leaves Mock-inoculated 8 WPI 1
Healthy_8WPI_C_aurantifolia_2-DESeq2 Leaves Mock-inoculated 8 WPI 2
Healthy_8WPI_C_aurantifolia_2-EdgeR Leaves Mock-inoculated 8 WPI 2
Healthy_16WPI_C_aurantifolia_1-DESeq2 Leaves Mock-inoculated 16 WPI 1
Healthy_16WPI_C_aurantifolia_1-EdgeR Leaves Mock-inoculated 16 WPI 1
Healthy_16WPI_C_aurantifolia_2-DESeq2 Leaves Mock-inoculated 16 WPI 2
Healthy_16WPI_C_aurantifolia_2-EdgeR Leaves Mock-inoculated 16 WPI 2
HLB_8WPI_C_aurantifolia_1-DESeq2 Leaves CLas inoculated 8 WPI 1
HLB_8WPI_C_aurantifolia_1-EdgeR Leaves CLas inoculated 8 WPI 1
HLB_8WPI_C_aurantifolia_2-DESeq2 Leaves CLas inoculated 8 WPI 2
HLB_8WPI_C_aurantifolia_2-EdgeR Leaves CLas inoculated 8 WPI 2
HLB_16WPI_C_aurantifolia_1-DESeq2 Leaves CLas inoculated 16 WPI 1
HLB_16WPI_C_aurantifolia_1-EdgeR Leaves CLas inoculated 16 WPI 1
HLB_16WPI_C_aurantifolia_2-DESeq2 Leaves CLas inoculated 16 WPI 2
HLB_16WPI_C_aurantifolia_2-EdgeR Leaves CLas inoculated 16 WPI 2