Citrus aurantifolia transcriptome-HLB infected leaves

Overview
Analysis NameCitrus aurantifolia transcriptome-HLB infected leaves
MethodTruSeq, Illumina (TransFlow)
SourcePRJNA574168
Date performed2020-03-03

This data is from Arce-Leal ÁP, Bautista R, Rodríguez-Negrete EA, Manzanilla-Ramírez MÁ, Velázquez-Monreal JJ, Méndez-Lozano J, Bejarano ER, Castillo AG, Claros MG, Leyva-López NE. De novo assembly and functional annotation of Citrus aurantifolia transcriptome from Candidatus Liberibacter asiaticus infected and non-infected trees. Data in brief. 2020 Apr; 29:105198.  The data used for the transcriptome assembly and expression experiment are under NCBI BioProject PRJNA574168.  Expression values are read counts.

Expression Data BioSamples, each sample was analyzed with two software (DESeq2 and EdgeR):

Sample NCBI BioSample name NCBI BioSample acc. NCBI SRA acc.
Healthy_8WPI_C_aurantifolia_1-DESeq2 Healthy 8 WPI Citrus aurantifolia 1 SAMN12842416 SRS5580013
Healthy_8WPI_C_aurantifolia_1-EdgeR      
Healthy_8WPI_C_aurantifolia_2-DESeq2 Healthy 8 WPI Citrus aurantifolia 2 SAMN12842417 SRS5580014
Healthy_8WPI_C_aurantifolia_2-EdgeR      
Healthy_16WPI_C_aurantifolia_1-DESeq2 Healthy 16 WPI Citrus aurantifolia 1 SAMN12842420 SRS5580017
Healthy_16WPI_C_aurantifolia_1-EdgeR      
Healthy_16WPI_C_aurantifolia_2-DESeq2 Healthy 16 WPI Citrus aurantifolia 2 SAMN12842421 SRS5580018
Healthy_16WPI_C_aurantifolia_2-EdgeR      
HLB_8WPI_C_aurantifolia_1-DESeq2 HLB 8 WPI Citrus aurantifolia 1 SAMN12842414 SRS5580011
HLB_8WPI_C_aurantifolia_1-EdgeR      
HLB_8WPI_C_aurantifolia_2-DESeq2 HLB 8 WPI Citrus aurantifolia 2 SAMN12842415 SRS5580012
HLB_8WPI_C_aurantifolia_2-EdgeR      
HLB_16WPI_C_aurantifolia_1-DESeq2 HLB 16 WPI Citrus aurantifolia 1 SAMN12842418 SRS5580015
HLB_16WPI_C_aurantifolia_1-EdgeR      
HLB_16WPI_C_aurantifolia_2-DESeq2 HLB 16 WPI Citrus aurantifolia 2 SAMN12842419 SRS5580016
HLB_16WPI_C_aurantifolia_2-EdgeR      
Properties
Additional information about this analysis:
Property NameValue
Data source filepublic://expression/6018816b28ccb_Normalized_counts_CLas-inoculated-forCGDupload.txt
Analysis Typetranscriptome