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Overview
| Analysis Name | Citrus aurantifolia transcriptome-HLB infected leaves |
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| Method | TruSeq, Illumina (TransFlow) |
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| Source | PRJNA574168 |
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| Date performed | 2020-03-03 |
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This data is from Arce-Leal ÁP, Bautista R, Rodríguez-Negrete EA, Manzanilla-Ramírez MÁ, Velázquez-Monreal JJ, Méndez-Lozano J, Bejarano ER, Castillo AG, Claros MG, Leyva-López NE. De novo assembly and functional annotation of Citrus aurantifolia transcriptome from Candidatus Liberibacter asiaticus infected and non-infected trees. Data in brief. 2020 Apr; 29:105198. The data used for the transcriptome assembly and expression experiment are under NCBI BioProject PRJNA574168. Expression values are read counts.
Expression Data BioSamples, each sample was analyzed with two software (DESeq2 and EdgeR):
| Sample |
NCBI BioSample name |
NCBI BioSample acc. |
NCBI SRA acc. |
| Healthy_8WPI_C_aurantifolia_1-DESeq2 |
Healthy 8 WPI Citrus aurantifolia 1 |
SAMN12842416 |
SRS5580013 |
| Healthy_8WPI_C_aurantifolia_1-EdgeR |
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| Healthy_8WPI_C_aurantifolia_2-DESeq2 |
Healthy 8 WPI Citrus aurantifolia 2 |
SAMN12842417 |
SRS5580014 |
| Healthy_8WPI_C_aurantifolia_2-EdgeR |
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| Healthy_16WPI_C_aurantifolia_1-DESeq2 |
Healthy 16 WPI Citrus aurantifolia 1 |
SAMN12842420 |
SRS5580017 |
| Healthy_16WPI_C_aurantifolia_1-EdgeR |
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| Healthy_16WPI_C_aurantifolia_2-DESeq2 |
Healthy 16 WPI Citrus aurantifolia 2 |
SAMN12842421 |
SRS5580018 |
| Healthy_16WPI_C_aurantifolia_2-EdgeR |
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| HLB_8WPI_C_aurantifolia_1-DESeq2 |
HLB 8 WPI Citrus aurantifolia 1 |
SAMN12842414 |
SRS5580011 |
| HLB_8WPI_C_aurantifolia_1-EdgeR |
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| HLB_8WPI_C_aurantifolia_2-DESeq2 |
HLB 8 WPI Citrus aurantifolia 2 |
SAMN12842415 |
SRS5580012 |
| HLB_8WPI_C_aurantifolia_2-EdgeR |
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| HLB_16WPI_C_aurantifolia_1-DESeq2 |
HLB 16 WPI Citrus aurantifolia 1 |
SAMN12842418 |
SRS5580015 |
| HLB_16WPI_C_aurantifolia_1-EdgeR |
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| HLB_16WPI_C_aurantifolia_2-DESeq2 |
HLB 16 WPI Citrus aurantifolia 2 |
SAMN12842419 |
SRS5580016 |
| HLB_16WPI_C_aurantifolia_2-EdgeR |
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Properties
Additional information about this analysis:
| Property Name | Value |
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| Data source file | public://expression/6018816b28ccb_Normalized_counts_CLas-inoculated-forCGDupload.txt |
| Analysis Type | transcriptome |
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