CGD Citations

Peer-reviewed papers citing CGD

2023

  1. da Silva, M. C., Pinto, P. I., Guerra, R., Duarte, A., Power, D. M., & Marques, N. T. (2023). Gene transcripts responsive to drought stress identified in Citrus macrophylla bark tissue transcriptome have a modified response in plants infected by Citrus tristeza virus. Scientia Horticulturae, 307, 111526.

2022

  1. Li, S. J., Liu, S. C., Lin, X. H., Grierson, D., Yin, X. R., & Chen, K. S. (2022). Citrus heat shock transcription factor CitHsfA7‐mediated citric acid degradation in response to heat stress. Plant, Cell & Environment, 45(1), 95-104.
  2. Matsumoto, Y., Kubo, T., Itami, Y., Islam, M., Watanabe, S., & Kotoda, N. (2022). QTL mapping of polymethoxyflavone (PMF) accumulation in citrus. Tree Genetics & Genomes, 18(1), 1-13.
  3. Zhang, M., Zhu, Y., Yang, H., Li, X., Xu, R., Zhu, F., & Cheng, Y. (2022). CsNIP5; 1 acts as a multifunctional regulator to confer water loss tolerance in citrus fruit. Plant Science, 316, 111150.
  4. Zhang, H., Li, X. Y., Lin, M. L., Hu, P. P., Lai, N. W., Huang, Z. R., & Chen, L. S. (2022). The aluminum distribution and translocation in two citrus species differing in aluminum tolerance. BMC Plant Biology, 22(1), 1-11.
  5. Shi, Q. F., Long, J. M., Yin, Z. P., Jiang, N., Feng, M. Q., Zheng, B., ... & Wu, X. M. (2022). miR171 modulates induction of somatic embryogenesis in citrus callus. Plant Cell Reports, 1-13.
  6. Bordoloi, K. S., Baruah, P. M., Das, M., & Agarwala, N. (2022). Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon. Food Bioscience, 46, 101448.
  7. Gill, K., Kumar, P., Kumar, A., Kapoor, B., Sharma, R., & Joshi, A. K. (2022). Comprehensive mechanistic insights into the citrus genetics, breeding challenges, biotechnological implications, and omics-based interventions. Tree Genetics & Genomes, 18(2), 1-26.
  8. Xin, Y. H., Wu, Y. X., Qiao, B., Su, L., Xie, S. Q., & Ling, P. (2022). Evaluation on the phenotypic diversity of Calamansi (Citrus microcarpa) germplasm in Hainan island. Scientific Reports, 12(1), 1-12.
  9. Carraro, E., & Di Iorio, A. (2022). Eligible strategies of drought response to improve drought resistance in woody crops: a mini-review. Plant Biotechnology Reports, 1-18.
  10. Hou, H., Kong, X., Zhou, Y., Yin, C., Jiang, Y., Qu, H., & Li, T. (2022). Genome-wide identification and characterization of bZIP transcription factors in relation to litchi (Litchi chinensis Sonn.) fruit ripening and postharvest storage. International Journal of Biological Macromolecules.
  11. Higgins, S. A., Mann, M., & Heck, M. (2022). Strain tracking of ‘Candidatus Liberibacter asiaticus’, citrus greening disease pathogen, enabled by high-resolution microbiome analysis of the Asian citrus psyllid. Phytopathology, (ja).
  12. Liu, S., Li, Y., Fang, H., Huang, B., Zhao, C., Sun, C., ... & Chen, K. (2022). Genome-wide identification and expression analysis of MATE gene family in citrus fruit (Citrus clementina). Genomics, 114(5), 110446.
  13. Aguila, L. C. R., Moreano, J. P. S., Akutse, K. S., Bamisile, B. S., Liu, J., Haider, F. U., ... & Wang, L. (2022). Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana. International Journal of Biological Macromolecules.
  14. Chen, C., Peng, X., Wan, C., Zhang, Y., Gan, Z., Zeng, J., ... & Chen, J. (2022). Lignin Biosynthesis Pathway and Redox Balance Act Synergistically in Conferring Resistance against Penicillium italicum Infection in 7-Demethoxytylophorine-Treated Navel Orange. Journal of Agricultural and Food Chemistry, 70(26), 8111-8123.
  15. Hui, W., Zheng, H., Fan, J., Wang, J., Saba, T., Wang, K., ... & Gong, W. (2022). Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum. BMC genomics, 23(1), 1-21.
  16. Tian, Y., Zeng, J., & Fan, R. (2022). Comprehensive Analysis of N6-Methyladenosine Regulatory Genes from Citrus grandis and Expression Profilings in the Fruits of “Huajuhong”(C. grandis “Tomentosa”) during Various Development Stages. Horticulturae, 8(5), 462.

2021

  1. Hu, X., Li, S., Lin, X., Fang, H., Shi, Y., Grierson, D., & Chen, K. (2021). Transcription Factor CitERF16 Is Involved in Citrus Fruit Sucrose Accumulation by Activating CitSWEET11d. Frontiers in plant science, 12, 809619-809619.
  2. Catalano, C., Di Guardo, M., Distefano, G., Caruso, M., Nicolosi, E., Deng, Z., ... & La Malfa, S. G. (2021). Biotechnological Approaches for Genetic Improvement of Lemon (Citrus limon (L.) Burm. f.) against Mal Secco Disease. Plants, 10(5), 1002.
  3. Montgomery, K. H., Brar, G., & Krishnan, V. V. (2021). Metabolomics Study at the Postharvest Conditions of Cold Storage and Fungicide (Imazalil Sulfate) Treatment in Navel Oranges and Clementine Mandarins. ACS Agricultural Science & Technology.
  4. Ma, G., Zhang, L., Seoka, M., Nakata, A., Yahata, M., Shimada, T., ... & Kato, M. (2021). Characterization of a Caffeic Acid 8-O-Methyltransferase from Citrus and Its Function in Nobiletin Biosynthesis. Journal of agricultural and food chemistry. 
  5. Bordoloi, K. S., Baruah, P., Das, M., & Agarwala, N. (2021). Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon. Food Bioscience, 101448.
  6. Guardo, M. D., Moretto, M., Moser, M., Catalano, C., Troggio, M., Deng, Z., ... & Gentile, A. (2021). The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.). Tree Genetics & Genomes, 17(6), 1-12.
  7. Tian, Y., Fan, R., & Zeng, J. (2021). Comprehensive Analysis of Jumonji Domain C Family from Citrus grandis and Expression Profilings in the Exocarps of “Huajuhong”(Citrus grandis “Tomentosa”) during Various Development Stages. Horticulturae, 7(12), 592.
  8. Flores-de la Rosa, F. R., Estudillo, E. V., Santillán-Mendoza, R., Rodriguez-Quibrera, C. G., & Adame-García, J. (2021). EFFECT OF THE GABA APPLICATION ON THE EXPRESSION OF ANTIOXIDANT GENES IN PERSIAN LIME. Tropical and Subtropical Agroecosystems, 24(3).
  9. Staton, M., Cannon, E., Sanderson, L. A., Wegrzyn, J., Anderson, T., Buehler, S., ... & Ficklin, S. (2021). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings in bioinformatics, 22(6), bbab238.
  10. Zhang, M., Zhu, Y., Yang, H., Li, X., Xu, R., Zhu, F., & Cheng, Y. (2021). CsNIP5; 1 acts as a multifunctional regulator to confer water loss tolerance in citrus fruit. Plant Science, 111150.
  11. Rahim, M. A., Afrin, K. S., Jung, H. J., Kim, H. T., Park, J. I., & Nou, I. S. (2021). Identification and characterization of carotenoid biosynthesis related genes in a novel dark skinned citrus mutant cultivar ‘Suneat’. Horticulture, Environment, and Biotechnology, 62(1), 99-111.
  12. Teper, D., & Wang, N. (2021). Consequences of adaptation of TAL effectors on host susceptibility to Xanthomonas. PLoS genetics, 17(1), e1009310.
  13. Huang, C. Y., Araujo, K., Sánchez, J. N., Kund, G., Trumble, J., Roper, C., ... & Jin, H. (2021). A stable antimicrobial peptide with dual functions of treating and preventing citrus Huanglongbing. Proceedings of the National Academy of Sciences, 118(6).
  14. Duan, J., Li, X., Zhang, J., Cheng, B., Liu, S., Li, H., ... & Chen, W. (2021). Cocktail Therapy of Fosthiazate and Cupric-Ammoniun Complex for Citrus Huanglongbing. Frontiers in Plant Science, 12, 479.
  15. Peng, A., Zou, X., He, Y., Chen, S., Liu, X., Zhang, J., ... & Zhao, X. (2021). Overexpressing a NPR1-like gene from Citrus paradisi enhanced Huanglongbing resistance in C. sinensis. Plant Cell Reports, 40(3), 529-541.
  16. Pan, R., Chen, Y., Deng, X., & Xu, M. (2021). Digital Gene Expression Analysis of Huanglongbing Affected Mandarins (Citrus reticulata Blanco) In Response to Thermotherapy. Horticultural Plant Journal, 7(1), 1-12.
  17. Jung, S., Lee, T., Gasic, K., Campbell, B. T., Yu, J., Humann, J., ... & Main, D. (2021). The Breeding Information Management System (BIMS): an online resource for crop breeding. Database, 2021.
  18. Ramanauskas, K., & Igić, B. (2021). RNase-based self-incompatibility in cacti. New Phytologist, 231(5), 2039-2049.
  19. Li, Q., Canton, M., Wu, H., Zhang, X., Zale, J., & Mou, Z. (2021). Efficient artificial microRNA vectors for gene silencing in citrus. Plant Cell Reports, 1-4.
  20. Zhao, C., Liu, X., Gong, Q., Cao, J., Shen, W., Yin, X., ... & Sun, C. (2021). Three AP2/ERF family members modulate flavonoid synthesis by regulating type IV chalcone isomerase in citrus. Plant biotechnology journal, 19(4), 671.
  21. Liu, X. C., Lin, X. H., Liu, S. C., Zhu, C. Q., Grierson, D., Li, S. J., & Chen, K. S. (2021). The effect of NH4+ on phosphoenolpyruvate carboxykinase gene expression, metabolic flux and citrate content of citrus juice sacs. Plant Physiology and Biochemistry, 167, 123-131.
  22. Jung, S., Cheng, C. H., Buble, K., Lee, T., Humann, J., Yu, J., ... & Main, D. (2021). Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database, 2021.
  23. Ren, H., He, Y., Qi, X., Zheng, X., Zhang, S., Yu, Z., & Hu, F. (2021). The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value. BMC Plant Biology, 21(1), 1-11.
  24. Li, S. J., Liu, S. C., Lin, X. H., Grierson, D., Yin, X. R., & Chen, K. S. Citrus heat shock transcription factor CitHsfA7‐mediated citric acid degradation in response to heat stress. Plant, Cell & Environment.
  25. Wang, F., Wu, Y., Wu, W., Huang, Y., Zhu, C., Zhang, R., ... & Zeng, J. (2021). Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection. BMC plant biology, 21(1), 1-16.
  26. Merritt, B. A., Zhang, X., Triplett, E. W., Mou, Z., & Orbović, V. (2021). Selection of transgenic citrus plants based on glyphosate tolerance conferred by a citrus 5-enolpyruvylshikimate-3-phosphate synthase variant. Plant Cell Reports, 40(10), 1947-1956.
  27. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q. S., & Luo, C. (2021). Genome-wide identification of citrus calmodulin-like genes and their expression in response to arbuscular mycorrhizal fungi colonization and drought. Canadian Journal of Plant Science, (ja).
  28. Al-Subhi, A. M., Al-Sadi, A. M., Al-Yahyai, R. A., Chen, Y., Mathers, T., Orlovskis, Z., ... & Hogenhout, S. A. (2021). Witches’ broom disease of lime contributes to phytoplasma epidemics and attracts insect vectors. Plant Disease, PDIS-10.
  29. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2021). Genome-wide identification of citrus histone acetyltransferase and deacetylase families and their expression in response to arbuscular mycorrhizal fungi and drought. Journal of Plant Interactions, 16(1), 367-376.
  30. Chin, E. L., Ramsey, J., Saha, S., Mishchuk, D., Chavez, J., Howe, K., ... & Slupsky, C. M. (2021). Multi-omics Comparison Reveals Landscape of Citrus limon and Citrus sinensis Response to ‘Candidatus Liberibacter asiaticus’. PhytoFrontiers™, 1(2), 76-84.
  31. Wenkai, H., Jingyan, W., Lexun, M., Feiyan, Z., Luping, J., Yu, Z., ... & Wei, G. (2021). Identification of key genes in the biosynthesis pathways related to terpenoids, alkaloids and flavonoids in fruits of Zanthoxylum armatum. Scientia Horticulturae, 290, 110523.
  32. Zhong, Y., Cheng, C., Moniruzzaman, M., Jiang, B., Jiang, N., & Zhong, G. (2021). Expression of miRNAs and their target genes in roots of ‘Sanhu’tangerine (Citrus reticulata blanco cv.‘Sanhu’) in response to Candidatus Liberibacter asiaticus infection. Journal of Plant Diseases and Protection, 128(2), 407-420.
  33. García S, A., & Casamayor, J. C. (2021). On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the Genome. BMC bioinformatics, 22(13), 1-26.
  34. Ribeiro, C., Xu, J., Teper, D., Lee, D., & Wang, N. (2021). The transcriptome landscapes of citrus leaf in different developmental stages. Plant Molecular Biology, 1-18.
  35. Pan, R., Chen, Y., Deng, X., & Xu, M. (2021). Digital Gene Expression Analysis of Huanglongbing Affected Mandarins (Citrus reticulata Blanco) In Response to Thermotherapy. Horticultural Plant Journal, 7(1), 1-12.
  36. Gong, J., Zeng, Y., Meng, Q., Guan, Y., Li, C., Yang, H., ... & Wang, P. (2021). Red light-induced kumquat fruit coloration is attributable to increased carotenoid metabolism regulated by FcrNAC22. Journal of Experimental Botany, 72(18), 6274-6290.
  37. Abutineh, M., Pizzo, N., Nifakos, N., Jin, X. L., Harlin, J. M., & Zhang, X. H. (2021). Genomic Analysis for Citrus Disease Detection. OBM Genetics, 5(1), 1-1.

2020

  1. Zhang, C., Chaiprasongsuk, M., Chanderbali, A. S., Chen, X., Fu, J., Soltis, D. E., & Chen, F. (2020). Origin and evolution of a gibberellin‐deactivating enzyme GAMT. Plant direct, 4(12), e00287.
  2. Arlotta, C., Ciacciulli, A., Strano, M. C., Cafaro, V., Salonia, F., Caruso, P., ... & Caruso, M. (2020). Disease Resistant Citrus Breeding Using Newly Developed High Resolution Melting and CAPS Protocols for Alternaria Brown Spot Marker Assisted Selection. Agronomy, 10(9), 1368.
  3. Li, Q., Qi, J., Qin, X., Dou, W., Lei, T., Hu, A., ... & Xu, L. (2020). CitGVD: a comprehensive database of citrus genomic variations. Horticulture Research, 7(1), 1-8.
  4. Shu, B., Jue, D., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2020). Genome-wide identification and expression analysis of the citrus calcium-dependent protein kinase (CDPK) genes in response to arbuscular mycorrhizal fungi colonization and drought. Biotechnology & Biotechnological Equipment, 34(1), 1304-1314.
  5. Dasgupta, K., Hotton, S., Belknap, W., Syed, Y., Dardick, C., Thilmony, R., & Thomson, J. G. (2020). Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnology. BMC biotechnology, 20(1), 1-15.
  6. Luo, C., Sun, Q., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Shu, B. (2020). Genome-wide identification and expression analysis of the Citrus malectin domain-containing receptor-like kinases in response to arbuscular mycorrhizal fungi colonization and drought. Horticulture, Environment, and Biotechnology, 61(5), 891-901.
  7. SHU, B., CAI, D., ZHANG, F., ZHANG, D., LIU, C., WU, Q., & LUO, C. (2020). Identifying citrus CBL and CIPK gene families and their expressions in response to drought and arbuscular mycorrhizal fungi colonization. Biologia plantarum, 64, 773-783.
  8. Rathod, A. R., Shah, K. D., Kotak, J. N., Ghelani, M. K., & Talaviya, J. R. (2020). Population dynamics of leaf miner, Phyllocnistis citrella (Stainton) infesting sweet orange. Journal of Entomology and Zoology Studies, 8(3), 1519-1521.
  9. Yin, C., Zhu, H., Jiang, Y., Shan, Y., & Gong, L. (2020). Silencing dicer-like genes reduces virulence and sRNA generation in Penicillium italicum, the cause of citrus blue mold. Cells, 9(2), 363.
  10. Gómez, L. M., Teixeira-Silva, N. S., Caserta, R., Takita, M. A., Marques, M. O., & de Souza, A. A. (2020). Overexpression of Citrus reticulata SAMT in Nicotiana tabacum increases MeSA volatilization and decreases Xylella fastidiosa symptoms. Planta, 252(6), 1-14.
  11. Zhang, F., Rossignol, P., Huang, T., Wang, Y., May, A., Dupont, C., ... & Irish, V. F. (2020). Reprogramming of stem cell activity to convert thorns into branches. Current Biology, 30(15), 2951-2961.
  12. Asins, M. J., Raga, M. V., Roca, D., & Carbonell, E. A. (2020). QTL and candidate gene analyses of rootstock-mediated mandarin fruit yield and quality traits under contrasting iron availabilities. Tree Genetics & Genomes, 16(6), 1-15.
  13. Huang, X., Wang, Y., Xu, J., & Wang, N. (2020). Development of multiplex genome editing toolkits for citrus with high efficacy in biallelic and homozygous mutations. Plant molecular biology, 104(3), 297-307.
  14. Bhatta, B. P., & Malla, S. (2020). Improving Horticultural Crops via CRISPR/Cas9: Current Successes and Prospects. Plants, 9(10), 1360.
  15. Duhan, N., Meshram, M., Loaiza, C. D., & Kaundal, R. (2020). citSATdb: Genome-Wide Simple Sequence Repeat (SSR) Marker Database of Citrus Species for Germplasm Characterization and Crop Improvement. Genes, 11(12), 1486.
  16. Liu, X., Zhao, C., Gong, Q., Wang, Y., Cao, J., Li, X., ... & Sun, C. (2020). Characterization of a caffeoyl-CoA O-methyltransferase-like enzyme involved in biosynthesis of polymethoxylated flavones in Citrus reticulata. Journal of experimental botany, 71(10), 3066-3079.
  17. Liu, X., Wang, Y., Chen, Y., Xu, S., Gong, Q., Zhao, C., ... & Sun, C. (2020). Characterization of a flavonoid 3’/5’/7-O-methyltransferase from Citrus reticulata and evaluation of the in vitro cytotoxicity of its methylated products. Molecules, 25(4), 858.
  18. Meng, H., Feng, J., Bai, T., Jian, Z., Chen, Y., & Wu, G. (2020). Genome-wide analysis of short interspersed nuclear elements provides insight into gene and genome evolution in citrus. DNA Research, 27(1), dsaa004.
  19. Julião, M. H., Silva, S. R., Ferro, J. A., & Varani, A. M. (2020). A Genomic and Transcriptomic Overview of MATE, ABC, and MFS Transporters in Citrus sinensis Interaction with Xanthomonas citri subsp. citri. Plants, 9(6), 794.

2019

  1. Ferreira, M. D. G., Castro, J. A., Silva, R. J. S., & Micheli, F. (2019). HVA22 from citrus: A small gene family whose some members are involved in plant response to abiotic stress. Plant Physiology and Biochemistry, 142, 395-404.
  2. Li, S. J., Xie, X. L., Liu, S. C., Chen, K. S., & Yin, X. R. (2019). Auto-and mutual-regulation between two CitERFs contribute to ethylene-induced citrus fruit degreening. Food chemistry, 299, 125163.
  3. Chagné, D., Vanderzande, S., Kirk, C., Profitt, N., Weskett, R., Gardiner, S. E., ... & Bassil, N. V. (2019). Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus× domestica Borkh.) using the OpenArray® platform. Horticulture research, 6(1), 1-16.
  4. Ouyang, Z. G., Mi, L. F., Duan, H. H., Hu, W., Chen, J. M., Peng, T., & Zhong, B. L. (2019). Differential expressions of citrus CAMTAs during fruit development and responses to abiotic stresses. BIOLOGIA PLANTARUM, 63(1), 354-364.
  5. Spoor, S., Cheng, C. H., Sanderson, L. A., Condon, B., Almsaeed, A., Chen, M., ... & Bett, K. (2019). Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. Database, 2019.
  6. Zheng, Y., Wu, S., Bai, Y., Sun, H., Jiao, C., Guo, S., ... & Xu, Y. (2019). Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. Nucleic acids research, 47(D1), D1128-D1136.
  7. Hodgson, H., De La Peña, R., Stephenson, M. J., Thimmappa, R., Vincent, J. L., Sattely, E. S., & Osbourn, A. (2019). Identification of key enzymes responsible for protolimonoid biosynthesis in plants: Opening the door to azadirachtin production. Proceedings of the National Academy of Sciences, 116(34), 17096-17104.
  8. Deng, H., Cai, Z., Xiang, S., Guo, Q., Huang, W., & Liang, G. (2019). Karyotype analysis of diploid and spontaneously occurring tetraploid blood orange (Citrus sinensis (L.) Osbeck) using multicolor FISH with repetitive DNA sequences as probes. Frontiers in Plant Science, 10, 331.
  9. Miao, L., Chen, C., Yao, L., Tran, J., & Zhang, H. (2019). Genome-wide identification, characterization, interaction network and expression profile of GAPDH gene family in sweet orange (Citrus sinensis). PeerJ, 7, e7934.
  10. Deng, H., Xiang, S., Guo, Q., Jin, W., Cai, Z., & Liang, G. (2019). Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications. BMC plant biology, 19(1), 77.
  11. Liu, Y., ul Qamar, M. T., Feng, J. W., Ding, Y., Wang, S., Wu, G., ... & Chen, L. L. (2019). Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species. BMC plant biology, 19(1), 140.
  12. Cao, M., Zhang, S., Li, M., Liu, Y., Dong, P., Li, S., ... & Zhou, Y. (2019). Discovery of Four Novel Viruses Associated with Flower Yellowing Disease of Green Sichuan Pepper (Zanthoxylum armatum) by Virome Analysis. Viruses, 11(8), 696.

2018

  1. Long, J. M., Liu, C. Y., Feng, M. Q., Liu, Y., Wu, X. M., & Guo, W. W. (2018). miR156-SPL modules regulate induction of somatic embryogenesis in citrus callus. Journal of experimental botany, 69(12), 2979-2993.
  2. Falk, T., Herndon, N., Grau, E., Buehler, S., Richter, P., Zaman, S., ... & Feltus, F. A. (2018). Growing and cultivating the forest genomics database, TreeGenes. Database, 2018.
  3. Guo, Z. H., Shu, W. S., Cheng, H. Y., Wang, G. M., Qi, K. J., Zhang, S. L., & Gu, C. (2018). Expression analysis of TCP genes in peach reveals an involvement of PpTCP. A2 in ethylene biosynthesis during fruit ripening. Plant Molecular Biology Reporter, 36(4), 588-595.
  4. Li, X., Si, W., Qin, Q., Wu, H., & Jiang, H. (2018). Deciphering evolutionary dynamics of SWEET genes in diverse plant lineages. Scientific reports, 8(1), 1-12.

2017

  1. Castro, J. A., Ferreira, M. D. G., Silva, R. J. S., Andrade, B. S., & Micheli, F. (2017). Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. PloS one, 12(5).
  2. Jung, S., Lee, T., Cheng, C. H., Ficklin, S., Yu, J., Humann, J., & Main, D. (2017). Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. Database, 2017.
  3. Chery, J. G., Sass, C., & Specht, C. D. (2017). Development of single‐copy nuclear intron markers for species‐level phylogenetics: Case study with Paullinieae (Sapindaceae) 1. Applications in plant sciences, 5(9), 1700051.
  4. Rawat, N., Kumar, B., Albrecht, U., Du, D., Huang, M., Yu, Q., ... & Deng, Z. (2017). Genome resequencing and transcriptome profiling reveal structural diversity and expression patterns of constitutive disease resistance genes in Huanglongbing-tolerant Poncirus trifoliata and its hybrids. Horticulture research, 4(1), 1-8.
  5. Barichello, D., Farinacio, R., dos Santos, C. C. N., Andrade, G. A., Nagashima, G. T., Garbúglio, D. D., ... & Carlos, E. F. (2017). Drought-tolerant transgenic Swingle Citrumelo controls accumulation of proline modulating the expression of key genes of the proline metabolism. Citrus Research & Technology, 38(2), 1-12.
  6. Araújo Castro, J., Gomes Ferreira, M. D., Santana Silva, R. J., Andrade, B. S., & Micheli, F. (2017). Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. PLOS ONE, 12(5), e0176878.
  7. Roselli, S., Olry, A., Vautrin, S., Coriton, O., Ritchie, D., Galati, G., ... & Bourgaud, F. (2017). A bacterial artificial chromosome (BAC) genomic approach reveals partial clustering of the furanocoumarin pathway genes in parsnip. The Plant Journal, 89(6), 1119-1132.
  8. da Silva, E. G., Ito, T. M., & de Souza, S. G. H. (2017). 'In silico'genome-wide identification and phylogenetic analysis of the WRKY transcription factor family in sweet orange ('Citrus sinensis'). Australian Journal of Crop Science, 11(6), 716.
  9. Doud, M. M., Wang, Y., Hoffman, M. T., Latza, C. L., Luo, W., Armstrong, C. M., ... & Duan, Y. (2017). Solar thermotherapy reduces the titer of Candidatus Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB-affected citrus plants. Horticulture research, 4(1), 1-9.
  10. Yu, Q., Chen, C., Du, D., Huang, M., Yao, J., Yu, F., ... & Gmitter, F. G. (2017). Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’. Horticulture research, 4(1), 1-15.

2016

  1. Yin, X. R., Xie, X. L., Xia, X. J., Yu, J. Q., Ferguson, I. B., Giovannoni, J. J., & Chen, K. S. (2016). Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. The Plant Journal, 86(5), 403-412.
  2. Jung, S., Lee, T., Ficklin, S., Yu, J., Cheng, C. H., & Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database, 2016.
  3. Wang, Y., Zhou, L., Yu, X., Stover, E., Luo, F., & Duan, Y. (2016). Transcriptome profiling of Huanglongbing (HLB) tolerant and susceptible citrus plants reveals the role of basal resistance in HLB tolerance. Frontiers in plant science, 7, 933.
  4. Nwugo, C. C., Doud, M. S., Duan, Y. P., & Lin, H. (2016). Proteomics analysis reveals novel host molecular mechanisms associated with thermotherapy of ‘Ca. Liberibacter asiaticus’-infected citrus plants. BMC plant biology, 16(1), 253.
  5. Shimizu, T., Kitajima, A., Nonaka, K., Yoshioka, T., Ohta, S., Goto, S., ... & Kaminuma, E. (2016). Hybrid origins of citrus varieties inferred from DNA marker analysis of nuclear and organelle genomes. PloS one, 11(11).
  6. Fujii, H., Ohta, S., Nonaka, K., Katayose, Y., Matsumoto, T., Endo, T., ... & Shimada, T. (2016). Parental diagnosis of satsuma mandarin (Citrus unshiu Marc.) revealed by nuclear and cytoplasmic markers. Breeding science, 16060.
  7. Reyes, C. A., De Francesco, A., Ocolotobiche, E. E., Costa, N., & García, M. L. (2016). Uncontrolled Citrus psorosis virus infection in Citrus sinensis transgenic plants expressing a viral 24K-derived hairpin that does not trigger RNA silencing. Physiological and Molecular Plant Pathology, 94, 149-155.
  8. Terol, J., Tadeo, F., Ventimilla, D., & Talon, M. (2016). An RNA‐Seq‐based reference transcriptome for Citrus. Plant biotechnology journal, 14(3), 938-950.
  9. Ramos-González, P. L., Chabi-Jesus, C., Guerra-Peraza, O., Breton, M. C., Arena, G. D., Nunes, M. A., ... & Freitas-Astúa, J. (2016). Phylogenetic and molecular variability studies reveal a new genetic clade of Citrus leprosis virus C. Viruses, 8(6), 153.
  10. Reyes, C. A., Ocolotobiche, E. E., Marmisollé, F. E., Robles Luna, G., Borniego, M. B., Bazzini, A. A., ... & García, M. L. (2016). Citrus psorosis virus 24 K protein interacts with citrus miRNA precursors, affects their processing and subsequent miRNA accumulation and target expression. Molecular plant pathology, 17(3), 317-329.
  11. Ayadi, M., Hanana, M., Kharrat, N., Merchaoui, H., Marzoug, R. B., Lauvergeat, V., ... & Mzid, R. (2016). The WRKY transcription factor family in Citrus: Valuable and useful candidate genes for citrus breeding. Applied biochemistry and biotechnology, 180(3), 516-543.
  12. Yu, Y., Chen, C., & Gmitter, F. G. (2016). QTL mapping of mandarin (Citrus reticulata) fruit characters using high-throughput SNP markers. Tree genetics & genomes, 12(4), 77.
  13. Raga, V., Intrigliolo, D. S., Bernet, G. P., Carbonell, E. A., & Asins, M. J. (2016). Genetic analysis of salt tolerance in a progeny derived from the citrus rootstocks Cleopatra mandarin and trifoliate orange. Tree genetics & genomes, 12(3), 34.
  14. Li, S. J., Yin, X. R., Xie, X. L., Allan, A. C., Ge, H., Shen, S. L., & Chen, K. S. (2016). The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Scientific reports, 6, 20151.
  15. Wu, J., Chen, L., Lin, D., Ma, Z., & Deng, X. (2016). Development and Application of a Multiplex Real-Time PCR Assay as an Indicator of Potential Allergenicity in Citrus Fruits. Journal of agricultural and food chemistry, 64(47), 9089-9098.
  16. Devaiah, S. P., Owens, D. K., Sibhatu, M. B., Sarkar, T. R., Strong, C. L., Mallampalli, V. K., ... & Wamucho, A. (2016). Identification, recombinant expression, and biochemical analysis of putative secondary product glucosyltransferases from Citrus paradisi. Journal of agricultural and food chemistry, 64(9), 1957-1969.

2015

  1. Li, S. J., Liu, X. J., Xie, X. L., Grierson, D., Yin, X. R., & Chen, K. S. (2015). CrMYB73, a PH-like gene, contributes to citric acid accumulation in citrus fruit. Scientia Horticulturae, 197, 212-217.
  2. Xu, M., Li, Y., Zheng, Z., Dai, Z., Tao, Y., & Deng, X. (2015). Transcriptional analyses of mandarins seriously infected by ‘Candidatus Liberibacter asiaticus’. PLoS One, 10(7).
  3. Lin, Q., Jiang, Q., Lin, J., Wang, D., Li, S., Liu, C., ... & Chen, K. (2015). Heat shock transcription factors expression during fruit development and under hot air stress in Ponkan (Citrus reticulata Blanco cv. Ponkan) fruit. Gene, 559(2), 129-136.
  4. Lin, Q., Wang, C., Dong, W., Jiang, Q., Wang, D., Li, S., ... & Chen, K. (2015). Transcriptome and metabolome analyses of sugar and organic acid metabolism in Ponkan (Citrus reticulata) fruit during fruit maturation. Gene, 554(1), 64-74.
  5. Ito, T. M., Rampim, M. C., Vieira, C. E., Polido, P. B., Kaschuk, G., & de Souza, S. G. H. (2015). Modulation of the transcriptional activity of the AP2/ERF family (DREB genes) in orange (Citrus sinensis) leaves subjected to drought stress. African Journal of Biotechnology, 14(11), 901-909.
  6. Terol, J., Ibañez, V., Carbonell, J., Alonso, R., Estornell, L. H., Licciardello, C., ... & Talon, M. (2015). Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation. BMC genomics, 16(1), 69.
  7. Lin, Q., Li, S., Dong, W., Feng, C., Yin, X., Xu, C., ... & Chen, K. (2015). Involvement of CitCHX and CitDIC in developmental-related and postharvest-hot-air driven citrate degradation in citrus fruits. PloS one, 10(3).
  8. Asins, M. J., Raga, V., Bernet, G. P., & Carbonell, E. A. (2015). Genetic analysis of reproductive, vegetative and fruit quality traits to improve Citrus varieties. Tree genetics & genomes, 11(6), 117.
  9. Wang, Y., Zhou, L., Li, D., Dai, L., Lawton-Rauh, A., Srimani, P. K., ... & Luo, F. (2015). Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genes. PloS one, 10(3).
  10. Roy, A., Stone, A. L., Shao, J., Otero-Colina, G., Wei, G., Choudhary, N., ... & Schneider, W. L. (2015). Identification and molecular characterization of nuclear Citrus leprosis virus, a member of the proposed Dichorhavirus genus infecting multiple Citrus species in Mexico. Phytopathology, 105(4), 564-575.
  11. da Costa Silva, S., Mendes, S., dos Santos Soares Filho, W., & Pedrosa-Harand, A. (2015). Chromosome homologies between Citrus and Poncirus—the comparative cytogenetic map of mandarin (Citrus reticulata). Tree genetics & genomes, 11(1), 811.

2014

  1. Chagné, D., Crowhurst, R. N., Pindo, M., Thrimawithana, A., Deng, C., Ireland, H., ... & Bianco, L. (2014). The draft genome sequence of European pear (Pyrus communis L.‘Bartlett’). PloS one, 9(4).
  2. Xie, X. L., Shen, S. L., Yin, X. R., Xu, Q., Grierson, D., Ferguson, I., & Chen, K. S. (2014). Isolation, classification and transcription profiles of the AP2/ERF transcription factor superfamily in citrus. Molecular biology reports, 41(7), 4261-4271.
  3. Azim, M. K., Khan, I. A., & Zhang, Y. (2014). Characterization of mango (Mangifera indica L.) transcriptome and chloroplast genome. Plant molecular biology, 85(1-2), 193-208.
  4. Caruso, M., Distefano, G., Paolo, D. P., La Malfa, S., Russo, G., Gentile, A., & Recupero, G. R. (2014). High resolution melting analysis for early identification of citrus hybrids: A reliable tool to overcome the limitations of morphological markers and assist rootstock breeding. Scientia horticulturae, 180, 199-206.
  5. Ito, T. M., Polido, P. B., Rampim, M. C., Kaschuk, G., & Souza, S. G. (2014). Genome-wide identification and phylogenetic analysis of the AP2/ERF gene superfamily in sweet orange (Citrus sinensis). Genet Mol Res, 13(3), 7839-7851.
  6. Pinheiro, T. T., Figueira, A., & Latado, R. R. (2014). Early-flowering sweet orange mutant ‘x11’as a model for functional genomic studies of Citrus. BMC research notes, 7(1), 511.
  7. Tecle, I. Y., Edwards, J. D., Menda, N., Egesi, C., Rabbi, I. Y., Kulakow, P., ... & Mueller, L. A. (2014). solGS: a web-based tool for genomic selection. BMC bioinformatics, 15(1), 398.
  8. Pereira, A. L., Carazzolle, M. F., Abe, V. Y., de Oliveira, M. L., Domingues, M. N., Silva, J. C., ... & Benedetti, C. E. (2014). Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response. BMC genomics, 15(1), 157.
  9. Licciardello, C., D’Agostino, N., Traini, A., Recupero, G. R., Frusciante, L., & Chiusano, M. L. (2014). Characterization of the glutathione S-transferase gene family through ESTs and expression analyses within common and pigmented cultivars of Citrus sinensis (L.) Osbeck. BMC plant biology, 14(1), 39.

2013

  1. An, C., Orbovic, V., & Mou, Z. (2013). An efficient intragenic vector for generating intragenic and cisgenic plants in citrus. American Journal of Plant Sciences, 4(11), 2131.
  2. Bernardi, J., Mazza, R., Caruso, P., Recupero, G. R., Marocco, A., & Licciardello, C. (2013). Use of an expressed sequence tag-based method for single nucleotide polymorphism identification and discrimination of Citrus species and cultivars. Molecular breeding, 31(3), 705-718.
  3. Peng, G., Xie, X. L., Jiang, Q., Song, S., & Xu, C. J. (2013). Chlorophyll a/b binding protein plays a key role in natural and ethylene-induced degreening of Ponkan (Citrus reticulata Blanco). Scientia Horticulturae, 160, 37-43.
  4. Mercati, F., Riccardi, P., Leebens-Mack, J., Abenavoli, M. R., Falavigna, A., & Sunseri, F. (2013). Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.). Plant science, 203, 115-123.
  5. Ma, G., Zhang, L., Matsuta, A., Matsutani, K., Yamawaki, K., Yahata, M., ... & Kato, M. (2013). Enzymatic formation of β-citraurin from β-cryptoxanthin and zeaxanthin by carotenoid cleavage dioxygenase4 in the flavedo of citrus fruit. Plant Physiology, 163(2), 682-695.
  6. Shangguan, L., Han, J., Kayesh, E., Sun, X., Zhang, C., Pervaiz, T., ... & Fang, J. (2013). Evaluation of genome sequencing quality in selected plant species using expressed sequence tags. PLoS One, 8(7).
  7. Iorio, R. A., Del Duca, S., Calamelli, E., Pula, C., Lodolini, M., Scamardella, F., ... & Ricci, G. (2013). Citrus allergy from pollen to clinical symptoms. PLoS One, 8(1).
  8. Peng, G., Wang, C., Song, S., Fu, X., Azam, M., Grierson, D., & Xu, C. (2013). The role of 1-deoxy-d-xylulose-5-phosphate synthase and phytoene synthase gene family in citrus carotenoid accumulation. Plant Physiology and Biochemistry, 71, 67-76.
  9. Roy, A., Shao, J., Hartung, J. S., Schneider, W., & Brlansky, R. H. (2013). A case study on discovery of novel citrus leprosis virus cytoplasmic type 2 utilizing small RNA libraries by next generation sequencing and bioinformatic analyses. J. Data Mining Genomics Proteomics, 4(129), 2153-0602.
  10. Fujii, H., Shimada, T., Nonaka, K., Kita, M., Kuniga, T., Endo, T., ... & Omura, M. (2013). High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree genetics & genomes, 9(1), 145-153.
  11. Sanderson, L. A., Ficklin, S. P., Cheng, C. H., Jung, S., Feltus, F. A., Bett, K. E., & Main, D. (2013). Tripal v1. 1: a standards-based toolkit for construction of online genetic and genomic databases. Database, 2013.
  12. Serra, I. A., Bernardo, L., Spadafora, A., Faccioli, P., Canton, C., & Mazzuca, S. (2013). The Citrus clementina putative allergens: from proteomic analysis to structural features. Journal of agricultural and food chemistry, 61(37), 8949-8958.
  13. Nwugo, C. C., Duan, Y., & Lin, H. (2013). Study on citrus response to huanglongbing highlights a down-regulation of defense-related proteins in lemon plants upon ‘Ca. Liberibacter asiaticus’ infection. PloS one, 8(6).
  14. de Carvalho, K., de Campos, M. K. F., Domingues, D. S., Pereira, L. F. P., & Vieira, L. G. E. (2013). The accumulation of endogenous proline induces changes in gene expression of several antioxidant enzymes in leaves of transgenic Swingle citrumelo. Molecular Biology Reports, 40(4), 3269-3279.
  15. Nwugo, C. C., Lin, H., Duan, Y., & Civerolo, E. L. (2013). The effect of ‘Candidatus Liberibacter asiaticus’ infection on the proteomic profiles and nutritional status of pre-symptomatic and symptomatic grapefruit (Citrus paradisi) plants. BMC plant biology, 13(1), 59.

2012

  1. Gmitter, F. G., Chen, C., Machado, M. A., De Souza, A. A., Ollitrault, P., Froehlicher, Y., & Shimizu, T. (2012). Citrus genomics. Tree Genetics & Genomes, 8(3), 611-626.
  2. Cheng, J., Khan, M. A., Qiu, W. M., Li, J., Zhou, H., Zhang, Q., ... & Li, S. (2012). Diversification of genes encoding granule-bound starch synthase in monocots and dicots is marked by multiple genome-wide duplication events. PLoS One, 7(1).
  3. Li, Z. T., Gmitter, F. G., Grosser, J. W., Chen, C., & Gray, D. J. (2012). Isolation and characterization of a novel anthocyanin-promoting MYBA gene family in Citrus. Tree genetics & genomes, 8(4), 675-685.
  4. Voo, S. S., Grimes, H. D., & Lange, B. M. (2012). Assessing the biosynthetic capabilities of secretory glands in Citrus peel. Plant physiology, 159(1), 81-94.
  5. Zhang, L., Ma, G., Shirai, Y., Kato, M., Yamawaki, K., Ikoma, Y., & Matsumoto, H. (2012). Expression and functional analysis of two lycopene β-cyclases from citrus fruits. Planta, 236(4), 1315-1325.
  6. Romero, P., Lafuente, M. T., & Rodrigo, M. J. (2012). The Citrus ABA signalosome: identification and transcriptional regulation during sweet orange fruit ripening and leaf dehydration. Journal of Experimental Botany, 63(13), 4931-4945.

2011

  1. Hyun, T. K., & Kim, J. S. (2011). Genomic identification of putative allergen genes in woodland strawberry (Fragaria vesca) and mandarin orange (Citrus clementina). Plant Omics J, 4(7), 428-34.
  2. Belknap, W. R., Wang, Y., Huo, N., Wu, J., Rockhold, D. R., Gu, Y. Q., & Stover, E. (2011). Characterizing the citrus cultivar Carrizo genome through 454 shotgun sequencing. Genome, 54(12), 1005-1015.
  3. Ficklin, S. P., Sanderson, L. A., Cheng, C. H., Staton, M. E., Lee, T., Cho, I. H., ... & Main, D. (2011). Tripal: a construction toolkit for online genome databases. Database, 2011.
  4. Jung, S., Menda, N., Redmond, S., Buels, R. M., Friesen, M., Bendana, Y., ... & Bett, K. E. (2011). The chado natural diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database, 2011.