CGD Citations

Peer-reviewed papers citing CGD

2022

  1. Li, S. J., Liu, S. C., Lin, X. H., Grierson, D., Yin, X. R., & Chen, K. S. (2022). Citrus heat shock transcription factor CitHsfA7‐mediated citric acid degradation in response to heat stress. Plant, Cell & Environment45(1), 95-104.
  2. Matsumoto, Y., Kubo, T., Itami, Y., Islam, M., Watanabe, S., & Kotoda, N. (2022). QTL mapping of polymethoxyflavone (PMF) accumulation in citrus. Tree Genetics & Genomes18(1), 1-13.
  3. Zhang, M., Zhu, Y., Yang, H., Li, X., Xu, R., Zhu, F., & Cheng, Y. (2022). CsNIP5; 1 acts as a multifunctional regulator to confer water loss tolerance in citrus fruit. Plant Science316, 111150.
  4. Zhang, H., Li, X. Y., Lin, M. L., Hu, P. P., Lai, N. W., Huang, Z. R., & Chen, L. S. (2022). The aluminum distribution and translocation in two citrus species differing in aluminum tolerance. BMC Plant Biology22(1), 1-11.
  5. Shi, Q. F., Long, J. M., Yin, Z. P., Jiang, N., Feng, M. Q., Zheng, B., ... & Wu, X. M. (2022). miR171 modulates induction of somatic embryogenesis in citrus callus. Plant Cell Reports, 1-13.
  6. Bordoloi, K. S., Baruah, P. M., Das, M., & Agarwala, N. (2022). Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon. Food Bioscience46, 101448.
  7. Gill, K., Kumar, P., Kumar, A., Kapoor, B., Sharma, R., & Joshi, A. K. (2022). Comprehensive mechanistic insights into the citrus genetics, breeding challenges, biotechnological implications, and omics-based interventions. Tree Genetics & Genomes18(2), 1-26.
  8. Xin, Y. H., Wu, Y. X., Qiao, B., Su, L., Xie, S. Q., & Ling, P. (2022). Evaluation on the phenotypic diversity of Calamansi (Citrus microcarpa) germplasm in Hainan islandScientific Reports, 12(1), 1-12.
  9. Carraro, E., & Di Iorio, A. (2022). Eligible strategies of drought response to improve drought resistance in woody crops: a mini-reviewPlant Biotechnology Reports, 1-18.

2021

  1. Hu, X., Li, S., Lin, X., Fang, H., Shi, Y., Grierson, D., & Chen, K. (2021). Transcription Factor CitERF16 Is Involved in Citrus Fruit Sucrose Accumulation by Activating CitSWEET11d. Frontiers in plant science, 12, 809619-809619.
  2. Catalano, C., Di Guardo, M., Distefano, G., Caruso, M., Nicolosi, E., Deng, Z., ... & La Malfa, S. G. (2021). Biotechnological Approaches for Genetic Improvement of Lemon (Citrus limon (L.) Burm. f.) against Mal Secco DiseasePlants, 10(5), 1002.
  3. Montgomery, K. H., Brar, G., & Krishnan, V. V. (2021). Metabolomics Study at the Postharvest Conditions of Cold Storage and Fungicide (Imazalil Sulfate) Treatment in Navel Oranges and Clementine MandarinsACS Agricultural Science & Technology.
  4. Ma, G., Zhang, L., Seoka, M., Nakata, A., Yahata, M., Shimada, T., ... & Kato, M. (2021). Characterization of a Caffeic Acid 8-O-Methyltransferase from Citrus and Its Function in Nobiletin BiosynthesisJournal of agricultural and food chemistry
  5. Bordoloi, K. S., Baruah, P., Das, M., & Agarwala, N. (2021). Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limonFood Bioscience, 101448.
  6. Guardo, M. D., Moretto, M., Moser, M., Catalano, C., Troggio, M., Deng, Z., ... & Gentile, A. (2021). The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.)Tree Genetics & Genomes, 17(6), 1-12.
  7. Tian, Y., Fan, R., & Zeng, J. (2021). Comprehensive Analysis of Jumonji Domain C Family from Citrus grandis and Expression Profilings in the Exocarps of “Huajuhong”(Citrus grandis “Tomentosa”) during Various Development Stages. Horticulturae, 7(12), 592.
  8. Flores-de la Rosa, F. R., Estudillo, E. V., Santillán-Mendoza, R., Rodriguez-Quibrera, C. G., & Adame-García, J. (2021). EFFECT OF THE GABA APPLICATION ON THE EXPRESSION OF ANTIOXIDANT GENES IN PERSIAN LIMETropical and Subtropical Agroecosystems, 24(3).
  9. Staton, M., Cannon, E., Sanderson, L. A., Wegrzyn, J., Anderson, T., Buehler, S., ... & Ficklin, S. (2021). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databasesBriefings in bioinformatics, 22(6), bbab238.
  10. Zhang, M., Zhu, Y., Yang, H., Li, X., Xu, R., Zhu, F., & Cheng, Y. (2021). CsNIP5; 1 acts as a multifunctional regulator to confer water loss tolerance in citrus fruitPlant Science, 111150.
  11. Rahim, M. A., Afrin, K. S., Jung, H. J., Kim, H. T., Park, J. I., & Nou, I. S. (2021). Identification and characterization of carotenoid biosynthesis related genes in a novel dark skinned citrus mutant cultivar ‘Suneat’Horticulture, Environment, and Biotechnology, 62(1), 99-111.
  12. Teper, D., & Wang, N. (2021). Consequences of adaptation of TAL effectors on host susceptibility to XanthomonasPLoS genetics17(1), e1009310.
  13. Huang, C. Y., Araujo, K., Sánchez, J. N., Kund, G., Trumble, J., Roper, C., ... & Jin, H. (2021). A stable antimicrobial peptide with dual functions of treating and preventing citrus Huanglongbing. Proceedings of the National Academy of Sciences118(6).
  14. Duan, J., Li, X., Zhang, J., Cheng, B., Liu, S., Li, H., ... & Chen, W. (2021). Cocktail Therapy of Fosthiazate and Cupric-Ammoniun Complex for Citrus HuanglongbingFrontiers in Plant Science12, 479.
  15. Peng, A., Zou, X., He, Y., Chen, S., Liu, X., Zhang, J., ... & Zhao, X. (2021). Overexpressing a NPR1-like gene from Citrus paradisi enhanced Huanglongbing resistance in C. sinensisPlant Cell Reports40(3), 529-541.
  16. Pan, R., Chen, Y., Deng, X., & Xu, M. (2021). Digital Gene Expression Analysis of Huanglongbing Affected Mandarins (Citrus reticulata Blanco) In Response to ThermotherapyHorticultural Plant Journal7(1), 1-12.
  17. Jung, S., Lee, T., Gasic, K., Campbell, B. T., Yu, J., Humann, J., ... & Main, D. (2021). The Breeding Information Management System (BIMS): an online resource for crop breedingDatabase, 2021.
  18. Ramanauskas, K., & Igić, B. (2021). RNase-based self-incompatibility in cactiNew Phytologist, 231(5), 2039-2049.
  19. Li, Q., Canton, M., Wu, H., Zhang, X., Zale, J., & Mou, Z. (2021). Efficient artificial microRNA vectors for gene silencing in citrusPlant Cell Reports, 1-4.
  20. Zhao, C., Liu, X., Gong, Q., Cao, J., Shen, W., Yin, X., ... & Sun, C. (2021). Three AP2/ERF family members modulate flavonoid synthesis by regulating type IV chalcone isomerase in citrusPlant biotechnology journal, 19(4), 671.
  21. Liu, X. C., Lin, X. H., Liu, S. C., Zhu, C. Q., Grierson, D., Li, S. J., & Chen, K. S. (2021). The effect of NH4+ on phosphoenolpyruvate carboxykinase gene expression, metabolic flux and citrate content of citrus juice sacsPlant Physiology and Biochemistry, 167, 123-131.
  22. Jung, S., Cheng, C. H., Buble, K., Lee, T., Humann, J., Yu, J., ... & Main, D. (2021). Tripal MegaSearch: a tool for interactive and customizable query and download of big dataDatabase, 2021.
  23. Ren, H., He, Y., Qi, X., Zheng, X., Zhang, S., Yu, Z., & Hu, F. (2021). The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal valueBMC Plant Biology, 21(1), 1-11.
  24. Li, S. J., Liu, S. C., Lin, X. H., Grierson, D., Yin, X. R., & Chen, K. S. Citrus heat shock transcription factor CitHsfA7‐mediated citric acid degradation in response to heat stressPlant, Cell & Environment.
  25. Wang, F., Wu, Y., Wu, W., Huang, Y., Zhu, C., Zhang, R., ... & Zeng, J. (2021). Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infectionBMC plant biology, 21(1), 1-16.
  26. Merritt, B. A., Zhang, X., Triplett, E. W., Mou, Z., & Orbović, V. (2021). Selection of transgenic citrus plants based on glyphosate tolerance conferred by a citrus 5-enolpyruvylshikimate-3-phosphate synthase variantPlant Cell Reports, 40(10), 1947-1956.
  27. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q. S., & Luo, C. (2021). Genome-wide identification of citrus calmodulin-like genes and their expression in response to arbuscular mycorrhizal fungi colonization and droughtCanadian Journal of Plant Science, (ja).
  28. Al-Subhi, A. M., Al-Sadi, A. M., Al-Yahyai, R. A., Chen, Y., Mathers, T., Orlovskis, Z., ... & Hogenhout, S. A. (2021). Witches’ broom disease of lime contributes to phytoplasma epidemics and attracts insect vectorsPlant Disease, PDIS-10.
  29. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2021). Genome-wide identification of citrus histone acetyltransferase and deacetylase families and their expression in response to arbuscular mycorrhizal fungi and droughtJournal of Plant Interactions, 16(1), 367-376.
  30. Chin, E. L., Ramsey, J., Saha, S., Mishchuk, D., Chavez, J., Howe, K., ... & Slupsky, C. M. (2021). Multi-omics Comparison Reveals Landscape of Citrus limon and Citrus sinensis Response to ‘Candidatus Liberibacter asiaticus’PhytoFrontiers™, 1(2), 76-84.
  31. Wenkai, H., Jingyan, W., Lexun, M., Feiyan, Z., Luping, J., Yu, Z., ... & Wei, G. (2021). Identification of key genes in the biosynthesis pathways related to terpenoids, alkaloids and flavonoids in fruits of Zanthoxylum armatumScientia Horticulturae, 290, 110523.
  32. Zhong, Y., Cheng, C., Moniruzzaman, M., Jiang, B., Jiang, N., & Zhong, G. (2021). Expression of miRNAs and their target genes in roots of ‘Sanhu’tangerine (Citrus reticulata blanco cv.‘Sanhu’) in response to Candidatus Liberibacter asiaticus infectionJournal of Plant Diseases and Protection, 128(2), 407-420.
  33. García S, A., & Casamayor, J. C. (2021). On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the GenomeBMC bioinformatics, 22(13), 1-26.
  34. Ribeiro, C., Xu, J., Teper, D., Lee, D., & Wang, N. (2021). The transcriptome landscapes of citrus leaf in different developmental stagesPlant Molecular Biology, 1-18.
  35. Pan, R., Chen, Y., Deng, X., & Xu, M. (2021). Digital Gene Expression Analysis of Huanglongbing Affected Mandarins (Citrus reticulata Blanco) In Response to ThermotherapyHorticultural Plant Journal, 7(1), 1-12.

2020

  1. Zhang, C., Chaiprasongsuk, M., Chanderbali, A. S., Chen, X., Fu, J., Soltis, D. E., & Chen, F. (2020). Origin and evolution of a gibberellin‐deactivating enzyme GAMTPlant direct4(12), e00287.
  2. Arlotta, C., Ciacciulli, A., Strano, M. C., Cafaro, V., Salonia, F., Caruso, P., ... & Caruso, M. (2020). Disease Resistant Citrus Breeding Using Newly Developed High Resolution Melting and CAPS Protocols for Alternaria Brown Spot Marker Assisted SelectionAgronomy10(9), 1368.
  3. Li, Q., Qi, J., Qin, X., Dou, W., Lei, T., Hu, A., ... & Xu, L. (2020). CitGVD: a comprehensive database of citrus genomic variationsHorticulture Research7(1), 1-8.
  4. Shu, B., Jue, D., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2020). Genome-wide identification and expression analysis of the citrus calcium-dependent protein kinase (CDPK) genes in response to arbuscular mycorrhizal fungi colonization and drought. Biotechnology & Biotechnological Equipment34(1), 1304-1314.
  5. Dasgupta, K., Hotton, S., Belknap, W., Syed, Y., Dardick, C., Thilmony, R., & Thomson, J. G. (2020). Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnologyBMC biotechnology20(1), 1-15.
  6. Luo, C., Sun, Q., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Shu, B. (2020). Genome-wide identification and expression analysis of the Citrus malectin domain-containing receptor-like kinases in response to arbuscular mycorrhizal fungi colonization and droughtHorticulture, Environment, and Biotechnology61(5), 891-901.
  7. SHU, B., CAI, D., ZHANG, F., ZHANG, D., LIU, C., WU, Q., & LUO, C. (2020). Identifying citrus CBL and CIPK gene families and their expressions in response to drought and arbuscular mycorrhizal fungi colonizationBiologia plantarum64, 773-783.
  8. Rathod, A. R., Shah, K. D., Kotak, J. N., Ghelani, M. K., & Talaviya, J. R. (2020). Population dynamics of leaf miner, Phyllocnistis citrella (Stainton) infesting sweet orange. Journal of Entomology and Zoology Studies, 8(3), 1519-1521.
  9. Yin, C., Zhu, H., Jiang, Y., Shan, Y., & Gong, L. (2020). Silencing dicer-like genes reduces virulence and sRNA generation in Penicillium italicum, the cause of citrus blue moldCells9(2), 363.
  10. Gómez, L. M., Teixeira-Silva, N. S., Caserta, R., Takita, M. A., Marques, M. O., & de Souza, A. A. (2020). Overexpression of Citrus reticulata SAMT in Nicotiana tabacum increases MeSA volatilization and decreases Xylella fastidiosa symptomsPlanta252(6), 1-14.
  11. Zhang, F., Rossignol, P., Huang, T., Wang, Y., May, A., Dupont, C., ... & Irish, V. F. (2020). Reprogramming of stem cell activity to convert thorns into branchesCurrent Biology30(15), 2951-2961.
  12. Asins, M. J., Raga, M. V., Roca, D., & Carbonell, E. A. (2020). QTL and candidate gene analyses of rootstock-mediated mandarin fruit yield and quality traits under contrasting iron availabilitiesTree Genetics & Genomes16(6), 1-15.
  13. Huang, X., Wang, Y., Xu, J., & Wang, N. (2020). Development of multiplex genome editing toolkits for citrus with high efficacy in biallelic and homozygous mutationsPlant molecular biology104(3), 297-307.
  14. Bhatta, B. P., & Malla, S. (2020). Improving Horticultural Crops via CRISPR/Cas9: Current Successes and ProspectsPlants9(10), 1360.
  15. Duhan, N., Meshram, M., Loaiza, C. D., & Kaundal, R. (2020). citSATdb: Genome-Wide Simple Sequence Repeat (SSR) Marker Database of Citrus Species for Germplasm Characterization and Crop ImprovementGenes11(12), 1486.
  16. Liu, X., Zhao, C., Gong, Q., Wang, Y., Cao, J., Li, X., ... & Sun, C. (2020). Characterization of a caffeoyl-CoA O-methyltransferase-like enzyme involved in biosynthesis of polymethoxylated flavones in Citrus reticulataJournal of experimental botany71(10), 3066-3079.
  17. Liu, X., Wang, Y., Chen, Y., Xu, S., Gong, Q., Zhao, C., ... & Sun, C. (2020). Characterization of a flavonoid 3’/5’/7-O-methyltransferase from Citrus reticulata and evaluation of the in vitro cytotoxicity of its methylated productsMolecules25(4), 858.
  18. Meng, H., Feng, J., Bai, T., Jian, Z., Chen, Y., & Wu, G. (2020). Genome-wide analysis of short interspersed nuclear elements provides insight into gene and genome evolution in citrusDNA Research27(1), dsaa004.
  19. Julião, M. H., Silva, S. R., Ferro, J. A., & Varani, A. M. (2020). A Genomic and Transcriptomic Overview of MATE, ABC, and MFS Transporters in Citrus sinensis Interaction with Xanthomonas citri subsp. citriPlants9(6), 794.

2019

  1. Ferreira, M. D. G., Castro, J. A., Silva, R. J. S., & Micheli, F. (2019). HVA22 from citrus: A small gene family whose some members are involved in plant response to abiotic stressPlant Physiology and Biochemistry142, 395-404.
  2. Li, S. J., Xie, X. L., Liu, S. C., Chen, K. S., & Yin, X. R. (2019). Auto-and mutual-regulation between two CitERFs contribute to ethylene-induced citrus fruit degreeningFood chemistry299, 125163.
  3. Chagné, D., Vanderzande, S., Kirk, C., Profitt, N., Weskett, R., Gardiner, S. E., ... & Bassil, N. V. (2019). Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus× domestica Borkh.) using the OpenArray® platformHorticulture research6(1), 1-16.
  4. Ouyang, Z. G., Mi, L. F., Duan, H. H., Hu, W., Chen, J. M., Peng, T., & Zhong, B. L. (2019). Differential expressions of citrus CAMTAs during fruit development and responses to abiotic stressesBIOLOGIA PLANTARUM63(1), 354-364.
  5. Spoor, S., Cheng, C. H., Sanderson, L. A., Condon, B., Almsaeed, A., Chen, M., ... & Bett, K. (2019). Tripal v3: an ontology-based toolkit for construction of FAIR biological community databasesDatabase2019.
  6. Zheng, Y., Wu, S., Bai, Y., Sun, H., Jiao, C., Guo, S., ... & Xu, Y. (2019). Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit cropsNucleic acids research47(D1), D1128-D1136.
  7. Hodgson, H., De La Peña, R., Stephenson, M. J., Thimmappa, R., Vincent, J. L., Sattely, E. S., & Osbourn, A. (2019). Identification of key enzymes responsible for protolimonoid biosynthesis in plants: Opening the door to azadirachtin productionProceedings of the National Academy of Sciences116(34), 17096-17104.
  8. Deng, H., Cai, Z., Xiang, S., Guo, Q., Huang, W., & Liang, G. (2019). Karyotype analysis of diploid and spontaneously occurring tetraploid blood orange (Citrus sinensis (L.) Osbeck) using multicolor FISH with repetitive DNA sequences as probesFrontiers in Plant Science10, 331.
  9. Miao, L., Chen, C., Yao, L., Tran, J., & Zhang, H. (2019). Genome-wide identification, characterization, interaction network and expression profile of GAPDH gene family in sweet orange (Citrus sinensis)PeerJ7, e7934.
  10. Deng, H., Xiang, S., Guo, Q., Jin, W., Cai, Z., & Liang, G. (2019). Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implicationsBMC plant biology19(1), 77.
  11. Liu, Y., ul Qamar, M. T., Feng, J. W., Ding, Y., Wang, S., Wu, G., ... & Chen, L. L. (2019). Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus speciesBMC plant biology19(1), 140.
  12. Cao, M., Zhang, S., Li, M., Liu, Y., Dong, P., Li, S., ... & Zhou, Y. (2019). Discovery of Four Novel Viruses Associated with Flower Yellowing Disease of Green Sichuan Pepper (Zanthoxylum armatum) by Virome AnalysisViruses11(8), 696.

2018

  1. Long, J. M., Liu, C. Y., Feng, M. Q., Liu, Y., Wu, X. M., & Guo, W. W. (2018). miR156-SPL modules regulate induction of somatic embryogenesis in citrus callusJournal of experimental botany69(12), 2979-2993.
  2. Falk, T., Herndon, N., Grau, E., Buehler, S., Richter, P., Zaman, S., ... & Feltus, F. A. (2018). Growing and cultivating the forest genomics database, TreeGenes. Database2018.
  3. Guo, Z. H., Shu, W. S., Cheng, H. Y., Wang, G. M., Qi, K. J., Zhang, S. L., & Gu, C. (2018). Expression analysis of TCP genes in peach reveals an involvement of PpTCP. A2 in ethylene biosynthesis during fruit ripeningPlant Molecular Biology Reporter36(4), 588-595.
  4. Li, X., Si, W., Qin, Q., Wu, H., & Jiang, H. (2018). Deciphering evolutionary dynamics of SWEET genes in diverse plant lineagesScientific reports8(1), 1-12.

2017

  1. Castro, J. A., Ferreira, M. D. G., Silva, R. J. S., Andrade, B. S., & Micheli, F. (2017). Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. OsbPloS one12(5).
  2. Jung, S., Lee, T., Cheng, C. H., Ficklin, S., Yu, J., Humann, J., & Main, D. (2017). Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databasesDatabase2017.
  3. Chery, J. G., Sass, C., & Specht, C. D. (2017). Development of single‐copy nuclear intron markers for species‐level phylogenetics: Case study with Paullinieae (Sapindaceae) 1Applications in plant sciences5(9), 1700051.
  4. Rawat, N., Kumar, B., Albrecht, U., Du, D., Huang, M., Yu, Q., ... & Deng, Z. (2017). Genome resequencing and transcriptome profiling reveal structural diversity and expression patterns of constitutive disease resistance genes in Huanglongbing-tolerant Poncirus trifoliata and its hybridsHorticulture research4(1), 1-8.
  5. Barichello, D., Farinacio, R., dos Santos, C. C. N., Andrade, G. A., Nagashima, G. T., Garbúglio, D. D., ... & Carlos, E. F. (2017). Drought-tolerant transgenic Swingle Citrumelo controls accumulation of proline modulating the expression of key genes of the proline metabolismCitrus Research & Technology38(2), 1-12.
  6. Araújo Castro, J., Gomes Ferreira, M. D., Santana Silva, R. J., Andrade, B. S., & Micheli, F. (2017). Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. OsbPLOS ONE12(5), e0176878.
  7. Roselli, S., Olry, A., Vautrin, S., Coriton, O., Ritchie, D., Galati, G., ... & Bourgaud, F. (2017). A bacterial artificial chromosome (BAC) genomic approach reveals partial clustering of the furanocoumarin pathway genes in parsnipThe Plant Journal89(6), 1119-1132.
  8. da Silva, E. G., Ito, T. M., & de Souza, S. G. H. (2017). 'In silico'genome-wide identification and phylogenetic analysis of the WRKY transcription factor family in sweet orange ('Citrus sinensis')Australian Journal of Crop Science11(6), 716.
  9. Doud, M. M., Wang, Y., Hoffman, M. T., Latza, C. L., Luo, W., Armstrong, C. M., ... & Duan, Y. (2017). Solar thermotherapy reduces the titer of Candidatus Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB-affected citrus plantsHorticulture research4(1), 1-9.
  10. Yu, Q., Chen, C., Du, D., Huang, M., Yao, J., Yu, F., ... & Gmitter, F. G. (2017). Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’Horticulture research4(1), 1-15.

2016

  1. Yin, X. R., Xie, X. L., Xia, X. J., Yu, J. Q., Ferguson, I. B., Giovannoni, J. J., & Chen, K. S. (2016). Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreeningThe Plant Journal86(5), 403-412.
  2. Jung, S., Lee, T., Ficklin, S., Yu, J., Cheng, C. H., & Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in ChadoDatabase2016.
  3. Wang, Y., Zhou, L., Yu, X., Stover, E., Luo, F., & Duan, Y. (2016). Transcriptome profiling of Huanglongbing (HLB) tolerant and susceptible citrus plants reveals the role of basal resistance in HLB toleranceFrontiers in plant science7, 933.
  4. Nwugo, C. C., Doud, M. S., Duan, Y. P., & Lin, H. (2016). Proteomics analysis reveals novel host molecular mechanisms associated with thermotherapy of ‘Ca. Liberibacter asiaticus’-infected citrus plants. BMC plant biology16(1), 253.
  5. Shimizu, T., Kitajima, A., Nonaka, K., Yoshioka, T., Ohta, S., Goto, S., ... & Kaminuma, E. (2016). Hybrid origins of citrus varieties inferred from DNA marker analysis of nuclear and organelle genomesPloS one11(11).
  6. Fujii, H., Ohta, S., Nonaka, K., Katayose, Y., Matsumoto, T., Endo, T., ... & Shimada, T. (2016). Parental diagnosis of satsuma mandarin (Citrus unshiu Marc.) revealed by nuclear and cytoplasmic markersBreeding science, 16060.
  7. Reyes, C. A., De Francesco, A., Ocolotobiche, E. E., Costa, N., & García, M. L. (2016). Uncontrolled Citrus psorosis virus infection in Citrus sinensis transgenic plants expressing a viral 24K-derived hairpin that does not trigger RNA silencingPhysiological and Molecular Plant Pathology94, 149-155.
  8. Terol, J., Tadeo, F., Ventimilla, D., & Talon, M. (2016). An RNA‐Seq‐based reference transcriptome for CitrusPlant biotechnology journal14(3), 938-950.
  9. Ramos-González, P. L., Chabi-Jesus, C., Guerra-Peraza, O., Breton, M. C., Arena, G. D., Nunes, M. A., ... & Freitas-Astúa, J. (2016). Phylogenetic and molecular variability studies reveal a new genetic clade of Citrus leprosis virus CViruses8(6), 153.
  10. Reyes, C. A., Ocolotobiche, E. E., Marmisollé, F. E., Robles Luna, G., Borniego, M. B., Bazzini, A. A., ... & García, M. L. (2016). Citrus psorosis virus 24 K protein interacts with citrus miRNA precursors, affects their processing and subsequent miRNA accumulation and target expressionMolecular plant pathology17(3), 317-329.
  11. Ayadi, M., Hanana, M., Kharrat, N., Merchaoui, H., Marzoug, R. B., Lauvergeat, V., ... & Mzid, R. (2016). The WRKY transcription factor family in Citrus: Valuable and useful candidate genes for citrus breedingApplied biochemistry and biotechnology180(3), 516-543.
  12. Yu, Y., Chen, C., & Gmitter, F. G. (2016). QTL mapping of mandarin (Citrus reticulata) fruit characters using high-throughput SNP markersTree genetics & genomes12(4), 77.
  13. Raga, V., Intrigliolo, D. S., Bernet, G. P., Carbonell, E. A., & Asins, M. J. (2016). Genetic analysis of salt tolerance in a progeny derived from the citrus rootstocks Cleopatra mandarin and trifoliate orange. Tree genetics & genomes12(3), 34.
  14. Li, S. J., Yin, X. R., Xie, X. L., Allan, A. C., Ge, H., Shen, S. L., & Chen, K. S. (2016). The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4Scientific reports6, 20151.
  15. Wu, J., Chen, L., Lin, D., Ma, Z., & Deng, X. (2016). Development and Application of a Multiplex Real-Time PCR Assay as an Indicator of Potential Allergenicity in Citrus FruitsJournal of agricultural and food chemistry64(47), 9089-9098.
  16. Devaiah, S. P., Owens, D. K., Sibhatu, M. B., Sarkar, T. R., Strong, C. L., Mallampalli, V. K., ... & Wamucho, A. (2016). Identification, recombinant expression, and biochemical analysis of putative secondary product glucosyltransferases from Citrus paradisiJournal of agricultural and food chemistry64(9), 1957-1969.

2015

  1. Li, S. J., Liu, X. J., Xie, X. L., Grierson, D., Yin, X. R., & Chen, K. S. (2015). CrMYB73, a PH-like gene, contributes to citric acid accumulation in citrus fruit. Scientia Horticulturae197, 212-217.
  2. Xu, M., Li, Y., Zheng, Z., Dai, Z., Tao, Y., & Deng, X. (2015). Transcriptional analyses of mandarins seriously infected by ‘Candidatus Liberibacter asiaticus’PLoS One10(7).
  3. Lin, Q., Jiang, Q., Lin, J., Wang, D., Li, S., Liu, C., ... & Chen, K. (2015). Heat shock transcription factors expression during fruit development and under hot air stress in Ponkan (Citrus reticulata Blanco cv. Ponkan) fruitGene559(2), 129-136.
  4. Lin, Q., Wang, C., Dong, W., Jiang, Q., Wang, D., Li, S., ... & Chen, K. (2015). Transcriptome and metabolome analyses of sugar and organic acid metabolism in Ponkan (Citrus reticulata) fruit during fruit maturationGene554(1), 64-74.
  5. Ito, T. M., Rampim, M. C., Vieira, C. E., Polido, P. B., Kaschuk, G., & de Souza, S. G. H. (2015). Modulation of the transcriptional activity of the AP2/ERF family (DREB genes) in orange (Citrus sinensis) leaves subjected to drought stressAfrican Journal of Biotechnology14(11), 901-909.
  6. Terol, J., Ibañez, V., Carbonell, J., Alonso, R., Estornell, L. H., Licciardello, C., ... & Talon, M. (2015). Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activationBMC genomics16(1), 69.
  7. Lin, Q., Li, S., Dong, W., Feng, C., Yin, X., Xu, C., ... & Chen, K. (2015). Involvement of CitCHX and CitDIC in developmental-related and postharvest-hot-air driven citrate degradation in citrus fruitsPloS one10(3).
  8. Asins, M. J., Raga, V., Bernet, G. P., & Carbonell, E. A. (2015). Genetic analysis of reproductive, vegetative and fruit quality traits to improve Citrus varietiesTree genetics & genomes11(6), 117.
  9. Wang, Y., Zhou, L., Li, D., Dai, L., Lawton-Rauh, A., Srimani, P. K., ... & Luo, F. (2015). Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genesPloS one10(3).
  10. Roy, A., Stone, A. L., Shao, J., Otero-Colina, G., Wei, G., Choudhary, N., ... & Schneider, W. L. (2015). Identification and molecular characterization of nuclear Citrus leprosis virus, a member of the proposed Dichorhavirus genus infecting multiple Citrus species in MexicoPhytopathology105(4), 564-575.
  11. da Costa Silva, S., Mendes, S., dos Santos Soares Filho, W., & Pedrosa-Harand, A. (2015). Chromosome homologies between Citrus and Poncirus—the comparative cytogenetic map of mandarin (Citrus reticulata)Tree genetics & genomes11(1), 811.

2014

  1. Chagné, D., Crowhurst, R. N., Pindo, M., Thrimawithana, A., Deng, C., Ireland, H., ... & Bianco, L. (2014). The draft genome sequence of European pear (Pyrus communis L.‘Bartlett’)PloS one9(4).
  2. Xie, X. L., Shen, S. L., Yin, X. R., Xu, Q., Grierson, D., Ferguson, I., & Chen, K. S. (2014). Isolation, classification and transcription profiles of the AP2/ERF transcription factor superfamily in citrusMolecular biology reports41(7), 4261-4271.
  3. Azim, M. K., Khan, I. A., & Zhang, Y. (2014). Characterization of mango (Mangifera indica L.) transcriptome and chloroplast genomePlant molecular biology85(1-2), 193-208.
  4. Caruso, M., Distefano, G., Paolo, D. P., La Malfa, S., Russo, G., Gentile, A., & Recupero, G. R. (2014). High resolution melting analysis for early identification of citrus hybrids: A reliable tool to overcome the limitations of morphological markers and assist rootstock breedingScientia horticulturae180, 199-206.
  5. Ito, T. M., Polido, P. B., Rampim, M. C., Kaschuk, G., & Souza, S. G. (2014). Genome-wide identification and phylogenetic analysis of the AP2/ERF gene superfamily in sweet orange (Citrus sinensis)Genet Mol Res13(3), 7839-7851.
  6. Pinheiro, T. T., Figueira, A., & Latado, R. R. (2014). Early-flowering sweet orange mutant ‘x11’as a model for functional genomic studies of CitrusBMC research notes7(1), 511.
  7. Tecle, I. Y., Edwards, J. D., Menda, N., Egesi, C., Rabbi, I. Y., Kulakow, P., ... & Mueller, L. A. (2014). solGS: a web-based tool for genomic selectionBMC bioinformatics15(1), 398.
  8. Pereira, A. L., Carazzolle, M. F., Abe, V. Y., de Oliveira, M. L., Domingues, M. N., Silva, J. C., ... & Benedetti, C. E. (2014). Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response. BMC genomics15(1), 157.
  9. Licciardello, C., D’Agostino, N., Traini, A., Recupero, G. R., Frusciante, L., & Chiusano, M. L. (2014). Characterization of the glutathione S-transferase gene family through ESTs and expression analyses within common and pigmented cultivars of Citrus sinensis (L.) OsbeckBMC plant biology14(1), 39.

2013

  1. An, C., Orbovic, V., & Mou, Z. (2013). An efficient intragenic vector for generating intragenic and cisgenic plants in citrus. American Journal of Plant Sciences4(11), 2131.
  2. Bernardi, J., Mazza, R., Caruso, P., Recupero, G. R., Marocco, A., & Licciardello, C. (2013). Use of an expressed sequence tag-based method for single nucleotide polymorphism identification and discrimination of Citrus species and cultivars. Molecular breeding31(3), 705-718.
  3. Peng, G., Xie, X. L., Jiang, Q., Song, S., & Xu, C. J. (2013). Chlorophyll a/b binding protein plays a key role in natural and ethylene-induced degreening of Ponkan (Citrus reticulata Blanco)Scientia Horticulturae160, 37-43.
  4. Mercati, F., Riccardi, P., Leebens-Mack, J., Abenavoli, M. R., Falavigna, A., & Sunseri, F. (2013). Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.)Plant science203, 115-123.
  5. Ma, G., Zhang, L., Matsuta, A., Matsutani, K., Yamawaki, K., Yahata, M., ... & Kato, M. (2013). Enzymatic formation of β-citraurin from β-cryptoxanthin and zeaxanthin by carotenoid cleavage dioxygenase4 in the flavedo of citrus fruitPlant Physiology163(2), 682-695.
  6. Shangguan, L., Han, J., Kayesh, E., Sun, X., Zhang, C., Pervaiz, T., ... & Fang, J. (2013). Evaluation of genome sequencing quality in selected plant species using expressed sequence tagsPLoS One8(7).
  7. Iorio, R. A., Del Duca, S., Calamelli, E., Pula, C., Lodolini, M., Scamardella, F., ... & Ricci, G. (2013). Citrus allergy from pollen to clinical symptomsPLoS One8(1).
  8. Peng, G., Wang, C., Song, S., Fu, X., Azam, M., Grierson, D., & Xu, C. (2013). The role of 1-deoxy-d-xylulose-5-phosphate synthase and phytoene synthase gene family in citrus carotenoid accumulationPlant Physiology and Biochemistry71, 67-76.
  9. Roy, A., Shao, J., Hartung, J. S., Schneider, W., & Brlansky, R. H. (2013). A case study on discovery of novel citrus leprosis virus cytoplasmic type 2 utilizing small RNA libraries by next generation sequencing and bioinformatic analysesJ. Data Mining Genomics Proteomics4(129), 2153-0602.
  10. Fujii, H., Shimada, T., Nonaka, K., Kita, M., Kuniga, T., Endo, T., ... & Omura, M. (2013). High-throughput genotyping in citrus accessions using an SNP genotyping arrayTree genetics & genomes9(1), 145-153.
  11. Sanderson, L. A., Ficklin, S. P., Cheng, C. H., Jung, S., Feltus, F. A., Bett, K. E., & Main, D. (2013). Tripal v1. 1: a standards-based toolkit for construction of online genetic and genomic databasesDatabase2013.
  12. Serra, I. A., Bernardo, L., Spadafora, A., Faccioli, P., Canton, C., & Mazzuca, S. (2013). The Citrus clementina putative allergens: from proteomic analysis to structural featuresJournal of agricultural and food chemistry61(37), 8949-8958.
  13. Nwugo, C. C., Duan, Y., & Lin, H. (2013). Study on citrus response to huanglongbing highlights a down-regulation of defense-related proteins in lemon plants upon ‘Ca. Liberibacter asiaticus’ infectionPloS one8(6).
  14. de Carvalho, K., de Campos, M. K. F., Domingues, D. S., Pereira, L. F. P., & Vieira, L. G. E. (2013). The accumulation of endogenous proline induces changes in gene expression of several antioxidant enzymes in leaves of transgenic Swingle citrumeloMolecular Biology Reports40(4), 3269-3279.
  15. Nwugo, C. C., Lin, H., Duan, Y., & Civerolo, E. L. (2013). The effect of ‘Candidatus Liberibacter asiaticus’ infection on the proteomic profiles and nutritional status of pre-symptomatic and symptomatic grapefruit (Citrus paradisi) plantsBMC plant biology13(1), 59.

2012

  1. Gmitter, F. G., Chen, C., Machado, M. A., De Souza, A. A., Ollitrault, P., Froehlicher, Y., & Shimizu, T. (2012). Citrus genomicsTree Genetics & Genomes8(3), 611-626.
  2. Cheng, J., Khan, M. A., Qiu, W. M., Li, J., Zhou, H., Zhang, Q., ... & Li, S. (2012). Diversification of genes encoding granule-bound starch synthase in monocots and dicots is marked by multiple genome-wide duplication eventsPLoS One7(1).
  3. Li, Z. T., Gmitter, F. G., Grosser, J. W., Chen, C., & Gray, D. J. (2012). Isolation and characterization of a novel anthocyanin-promoting MYBA gene family in CitrusTree genetics & genomes8(4), 675-685.
  4. Voo, S. S., Grimes, H. D., & Lange, B. M. (2012). Assessing the biosynthetic capabilities of secretory glands in Citrus peelPlant physiology159(1), 81-94.
  5. Zhang, L., Ma, G., Shirai, Y., Kato, M., Yamawaki, K., Ikoma, Y., & Matsumoto, H. (2012). Expression and functional analysis of two lycopene β-cyclases from citrus fruitsPlanta236(4), 1315-1325.
  6. Romero, P., Lafuente, M. T., & Rodrigo, M. J. (2012). The Citrus ABA signalosome: identification and transcriptional regulation during sweet orange fruit ripening and leaf dehydrationJournal of Experimental Botany63(13), 4931-4945.

2011

  1. Hyun, T. K., & Kim, J. S. (2011). Genomic identification of putative allergen genes in woodland strawberry (Fragaria vesca) and mandarin orange (Citrus clementina)Plant Omics J4(7), 428-34.
  2. Belknap, W. R., Wang, Y., Huo, N., Wu, J., Rockhold, D. R., Gu, Y. Q., & Stover, E. (2011). Characterizing the citrus cultivar Carrizo genome through 454 shotgun sequencingGenome54(12), 1005-1015.
  3. Ficklin, S. P., Sanderson, L. A., Cheng, C. H., Staton, M. E., Lee, T., Cho, I. H., ... & Main, D. (2011). Tripal: a construction toolkit for online genome databasesDatabase2011.
  4. Jung, S., Menda, N., Redmond, S., Buels, R. M., Friesen, M., Bendana, Y., ... & Bett, K. E. (2011). The chado natural diversity module: a new generic database schema for large-scale phenotyping and genotyping dataDatabase2011.