CGD Citations

Peer-reviewed papers citing CGD

2023 (19)

  1. la Rosa, F. R., González-Cruz, C., Adame-García, J., Chan-León, A. C., Santillán-Mendoza, R., Santamaría, J. M., & Estrella-Maldonado, H. (2023). Transcriptome-wide Identification of CDR Family in Citrus Latifolia and its Expression During HLB Disease. Tropical Plant Biology, 1-9.
  2. da Silva, M. C., Pinto, P. I., Guerra, R., Duarte, A., Power, D. M., & Marques, N. T. (2023). Gene transcripts responsive to drought stress identified in Citrus macrophylla bark tissue transcriptome have a modified response in plants infected by Citrus tristeza virus. Scientia Horticulturae, 307, 111526.
    Cited By
  3. Jeong, H., Yun, Y. B., Jeong, S. Y., Cho, Y., & Kim, S. (2023). Characterization of miniature inverted repeat transposable elements inserted in the CitRWP gene controlling nucellar embryony and development of molecular markers for reliable genotyping of CitRWP in Citrus species. Scientia Horticulturae, 315, 112003.
    Cited By
  4. Nakandala, U., Masouleh, A. K., Smith, M. W., Furtado, A., Mason, P., Constantin, L., & Henry, R. J. (2023). Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes. Horticulture Research, 10(5), uhad058.
    Cited By
  5. Maheen, N., Shafiq, M., Sadiq, S., Farooq, M., Ali, Q., Habib, U., ... & Ali, F. (2023). Genome Identification and Characterization of WRKY Transcription Factor Gene Family in Mandarin (Citrus reticulata). Agriculture, 13(6), 1182.
  6. Gao, Y., Xu, J., Li, Z., Zhang, Y., Riera, N., Xiong, Z., ... & Wang, N. (2023). Citrus genomic resources unravel putative genetic determinants of Huanglongbing pathogenicity. Iscience, 26(2).
  7. Kubo, T., Matsumoto, Y., Yamashita, T., Watanabe, S., & Kotoda, N. (2023). QTL mapping of flavanone glycoside accumulation in citrus. Tree Genetics & Genomes, 19(2), 18.
  8. Wang, X., Li, Y., Lu, W., Zhang, M., Deng, H., Xiong, B., ... & Wang, Z. (2023). A citrus pulp mastication trait-related ABSCISIC ACID-INSENSITIVE 5-like protein promotes fruit softening via transcriptionally activating pectate lyase gene. Scientia Horticulturae, 314, 111933.
  9. Gong, J., Yang, H., Xu, Y., Zeng, Y., Liu, P., Chen, C., ... & Sun, X. (2023). Differential regulation of red light-and ethephon-induced degreening in postharvest kumquat fruit. Postharvest Biology and Technology, 198, 112264.
    Cited By
  10. Singh, J., Sharma, A., Sharma, V., Gaikwad, P. N., Sidhu, G. S., Kaur, G., ... & Rattanpal, H. S. (2023). Comprehensive genome-wide identification and transferability of chromosome-specific highly variable microsatellite markers from citrus species. Scientific Reports, 13(1), 10919.
  11. Sadiq, S., Hussain, M., Iqbal, S., Shafiq, M., Balal, R. M., Seleiman, M. F., ... & Shahid, M. A. (2023). Genome-Wide Identification and Characterization of the Biosynthesis of the Polyamine Gene Family in Citrus unshiu. Genes, 14(8), 1527.
  12. Volk, G. M., Gmitter Jr, F. G., & Krueger, R. R. (2023). Conserving Citrus Diversity: From Vavilov’s Early Explorations to Genebanks around the World. Plants, 12(4), 814.
    Cited By
  13. Misiewicz, T. M., Simmons, T., Carter, B. E., Fine, P. V., & Moore, A. J. (2023). Parallel evolution and cryptic diversification in a common and widespread Amazonian tree, Protium subserratum. Molecular Ecology, 32(9), 2301-2319.
  14. Liao, Z., Liu, X., Zheng, J., Zhao, C., Wang, D., Xu, Y., & Sun, C. (2023). A multifunctional true caffeoyl coenzyme AO-methyltransferase enzyme participates in the biosynthesis of polymethoxylated flavones in citrus. Plant Physiology, kiad249.
  15. Aguila, L. C. R., Moreano, J. P. S., Akutse, K. S., Bamisile, B. S., Liu, J., Haider, F. U., ... & Wang, L. (2023). Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana. International Journal of Biological Macromolecules, 225, 886-898.
  16. Testolin, R., Messina, R., Cipriani, G., & De Mori, G. (2023). SSR‐based DNA fingerprinting of fruit crops. Crop Science, 63(2), 390-459.
    Cited By
  17. Fang, H., Shi, Y., Liu, S., Jin, R., Sun, J., Grierson, D., ... & Chen, K. (2023). The transcription factor CitZAT5 modifies sugar accumulation and hexose proportion in citrus fruit. Plant Physiology, 192(3), 1858-1876.
    Cited By
  18. Makam, S., Sétamou, M., Alabi, O. J., Day, W., Cromey, D., & Nwugo, C. (2023). Mitigation of Huanglongbing: Implications of a biologically-enhanced nutritional program on yield, pathogen localization and host gene expression profiles. Plant Disease, (ja).
    Cited By
  19. Yadav, C. B., Rozen, A., Eshed, R., Ish-Shalom, M., Faigenboim, A., Dillon, N., ... & Sherman, A. (2023). Promoter insertion leads to polyembryony in mango—a case of convergent evolution with citrus. Horticulture Research, 10(12), uhad227.

2022 (23)

  1. Kim, H. B., Oh, C. J., Kim, N. H., Choi, C. W., Kim, M., Park, S., ... & Song, K. J. (2022). Genome-wide identification and expression profiling of the pectin methylesterase gene family in Citrus sinensis (L.) Osbeck. Journal of Plant Biotechnology, 49(4), 271-291.
    Cited By
  2. Li, S. J., Liu, S. C., Lin, X. H., Grierson, D., Yin, X. R., & Chen, K. S. (2022). Citrus heat shock transcription factor CitHsfA7‐mediated citric acid degradation in response to heat stress. Plant, Cell & Environment, 45(1), 95-104.
    Cited By
  3. Matsumoto, Y., Kubo, T., Itami, Y., Islam, M., Watanabe, S., & Kotoda, N. (2022). QTL mapping of polymethoxyflavone (PMF) accumulation in citrus. Tree Genetics & Genomes, 18(1), 1-13.
    Cited By
  4. Zhang, M., Zhu, Y., Yang, H., Li, X., Xu, R., Zhu, F., & Cheng, Y. (2022). CsNIP5; 1 acts as a multifunctional regulator to confer water loss tolerance in citrus fruit. Plant Science, 316, 111150.
    Cited By
  5. Zhang, H., Li, X. Y., Lin, M. L., Hu, P. P., Lai, N. W., Huang, Z. R., & Chen, L. S. (2022). The aluminum distribution and translocation in two citrus species differing in aluminum tolerance. BMC Plant Biology, 22(1), 1-11.
    Cited By
  6. Shi, Q. F., Long, J. M., Yin, Z. P., Jiang, N., Feng, M. Q., Zheng, B., ... & Wu, X. M. (2022). miR171 modulates induction of somatic embryogenesis in citrus callus. Plant Cell Reports, 1-13.
    Cited By
  7. Bordoloi, K. S., Baruah, P. M., Das, M., & Agarwala, N. (2022). Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon. Food Bioscience, 46, 101448.
    Cited By
  8. Gill, K., Kumar, P., Kumar, A., Kapoor, B., Sharma, R., & Joshi, A. K. (2022). Comprehensive mechanistic insights into the citrus genetics, breeding challenges, biotechnological implications, and omics-based interventions. Tree Genetics & Genomes, 18(2), 1-26.
    Cited By
  9. Xin, Y. H., Wu, Y. X., Qiao, B., Su, L., Xie, S. Q., & Ling, P. (2022). Evaluation on the phenotypic diversity of Calamansi (Citrus microcarpa) germplasm in Hainan island. Scientific Reports, 12(1), 1-12.
    Cited By
  10. Carraro, E., & Di Iorio, A. (2022). Eligible strategies of drought response to improve drought resistance in woody crops: a mini-reviewPlant Biotechnology Reports, 1-18.
    Cited By
  11. Hou, H., Kong, X., Zhou, Y., Yin, C., Jiang, Y., Qu, H., & Li, T. (2022). Genome-wide identification and characterization of bZIP transcription factors in relation to litchi (Litchi chinensis Sonn.) fruit ripening and postharvest storage. International Journal of Biological Macromolecules.
    Cited By
  12. Higgins, S. A., Mann, M., & Heck, M. (2022). Strain tracking of ‘Candidatus Liberibacter asiaticus’, citrus greening disease pathogen, enabled by high-resolution microbiome analysis of the Asian citrus psyllid. Phytopathology, (ja).
    Cited By
  13. Liu, S., Li, Y., Fang, H., Huang, B., Zhao, C., Sun, C., ... & Chen, K. (2022). Genome-wide identification and expression analysis of MATE gene family in citrus fruit (Citrus clementina). Genomics, 114(5), 110446.
    Cited By
  14. Chen, C., Peng, X., Wan, C., Zhang, Y., Gan, Z., Zeng, J., ... & Chen, J. (2022). Lignin Biosynthesis Pathway and Redox Balance Act Synergistically in Conferring Resistance against Penicillium italicum Infection in 7-Demethoxytylophorine-Treated Navel Orange. Journal of Agricultural and Food Chemistry, 70(26), 8111-8123.
    Cited By
  15. Hui, W., Zheng, H., Fan, J., Wang, J., Saba, T., Wang, K., ... & Gong, W. (2022). Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum. BMC genomics, 23(1), 1-21.
    Cited By
  16. Tian, Y., Zeng, J., & Fan, R. (2022). Comprehensive Analysis of N6-Methyladenosine Regulatory Genes from Citrus grandis and Expression Profilings in the Fruits of “Huajuhong”(C. grandis “Tomentosa”) during Various Development Stages. Horticulturae, 8(5), 462.
    Cited By
  17. Khalilzadeh, M., Weber, K. C., Dutt, M., El-Mohtar, C. A., & Levy, A. (2022). Comparative transcriptome analysis of Citrus macrophylla tree infected with Citrus tristeza virus stem pitting mutants provides new insight into the role of phloem regeneration in stem pitting disease. Frontiers in Plant Science, 13, 987831
    Cited By
  18. Hou, H., Kong, X., Zhou, Y., Yin, C., Jiang, Y., Qu, H., & Li, T. (2022). Genome-wide identification and characterization of bZIP transcription factors in relation to litchi (Litchi chinensis Sonn.) fruit ripening and postharvest storage. International Journal of Biological Macromolecules, 222, 2176-2189.
    Cited By
  19. Zeng, J., Chen, C., Chen, M., & Chen, J. (2022). Comparative transcriptomic and metabolomic analyses reveal the delaying effect of naringin on postharvest decay in citrus fruit. Frontiers in Plant Science, 13, 1045857.
    Cited By
  20. Wang, P., Mo, Y., Wang, Y., Fei, Y., Huang, J., Ni, J., & Xu, Z. F. (2022). Macadamia germplasm and genomic database (MacadamiaGGD): A comprehensive platform for germplasm innovation and functional genomics in Macadamia. Frontiers in plant science, 13, 1007266.
    Cited By
  21. Higgins, S. A., Mann, M., & Heck, M. (2022). Strain Tracking of ‘Candidatus Liberibacter asiaticus’, the Citrus Greening Pathogen, by High-Resolution Microbiome Analysis of Asian Citrus Psyllids. Phytopathology®, 112(11), 2273-2287.
    Cited By
  22. Liu, S., Liu, X., Gou, B., Wang, D., Liu, C., Sun, J., ... & Chen, K. (2022). The interaction between CitMYB52 and CitbHLH2 negatively regulates citrate accumulation by activating CitALMT in citrus fruit. Frontiers in Plant Science, 13, 848869.
    Cited By
  23. Grimplet, J. (2022). Genomic and Bioinformatic Resources for Perennial Fruit Species. Current Genomics, 23(4), 217.

2021 (51)

  1. Hu, X., Li, S., Lin, X., Fang, H., Shi, Y., Grierson, D., & Chen, K. (2021). Transcription Factor CitERF16 Is Involved in Citrus Fruit Sucrose Accumulation by Activating CitSWEET11d. Frontiers in plant science, 12, 809619-809619.
    Cited By
  2. Catalano, C., Di Guardo, M., Distefano, G., Caruso, M., Nicolosi, E., Deng, Z., ... & La Malfa, S. G. (2021). Biotechnological Approaches for Genetic Improvement of Lemon (Citrus limon (L.) Burm. f.) against Mal Secco DiseasePlants, 10(5), 1002.
    Cited By
  3. Montgomery, K. H., Brar, G., & Krishnan, V. V. (2021). Metabolomics Study at the Postharvest Conditions of Cold Storage and Fungicide (Imazalil Sulfate) Treatment in Navel Oranges and Clementine MandarinsACS Agricultural Science & Technology.
    Cited By
  4. Ma, G., Zhang, L., Seoka, M., Nakata, A., Yahata, M., Shimada, T., ... & Kato, M. (2021). Characterization of a Caffeic Acid 8-O-Methyltransferase from Citrus and Its Function in Nobiletin BiosynthesisJournal of agricultural and food chemistry
    Cited By
  5. Guardo, M. D., Moretto, M., Moser, M., Catalano, C., Troggio, M., Deng, Z., ... & Gentile, A. (2021). The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.)Tree Genetics & Genomes, 17(6), 1-12.
    Cited By
  6. Tian, Y., Fan, R., & Zeng, J. (2021). Comprehensive Analysis of Jumonji Domain C Family from Citrus grandis and Expression Profilings in the Exocarps of “Huajuhong”(Citrus grandis “Tomentosa”) during Various Development Stages. Horticulturae, 7(12), 592.
    Cited By
  7. Flores-de la Rosa, F. R., Estudillo, E. V., Santillán-Mendoza, R., Rodriguez-Quibrera, C. G., & Adame-García, J. (2021). EFFECT OF THE GABA APPLICATION ON THE EXPRESSION OF ANTIOXIDANT GENES IN PERSIAN LIMETropical and Subtropical Agroecosystems, 24(3).
  8. Staton, M., Cannon, E., Sanderson, L. A., Wegrzyn, J., Anderson, T., Buehler, S., ... & Ficklin, S. (2021). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databasesBriefings in bioinformatics, 22(6), bbab238.
    Cited By
  9. Rahim, M. A., Afrin, K. S., Jung, H. J., Kim, H. T., Park, J. I., & Nou, I. S. (2021). Identification and characterization of carotenoid biosynthesis related genes in a novel dark skinned citrus mutant cultivar ‘Suneat’Horticulture, Environment, and Biotechnology, 62(1), 99-111.
  10. Teper, D., & Wang, N. (2021). Consequences of adaptation of TAL effectors on host susceptibility to XanthomonasPLoS genetics17(1), e1009310.
    Cited By
  11. Huang, C. Y., Araujo, K., Sánchez, J. N., Kund, G., Trumble, J., Roper, C., ... & Jin, H. (2021). A stable antimicrobial peptide with dual functions of treating and preventing citrus Huanglongbing. Proceedings of the National Academy of Sciences118(6).
    Cited By
  12. Duan, J., Li, X., Zhang, J., Cheng, B., Liu, S., Li, H., ... & Chen, W. (2021). Cocktail Therapy of Fosthiazate and Cupric-Ammoniun Complex for Citrus HuanglongbingFrontiers in Plant Science12, 479.
    Cited By
  13. Peng, A., Zou, X., He, Y., Chen, S., Liu, X., Zhang, J., ... & Zhao, X. (2021). Overexpressing a NPR1-like gene from Citrus paradisi enhanced Huanglongbing resistance in C. sinensisPlant Cell Reports40(3), 529-541.
    Cited By
  14. Pan, R., Chen, Y., Deng, X., & Xu, M. (2021). Digital Gene Expression Analysis of Huanglongbing Affected Mandarins (Citrus reticulata Blanco) In Response to ThermotherapyHorticultural Plant Journal7(1), 1-12.
    Cited By
  15. Jung, S., Lee, T., Gasic, K., Campbell, B. T., Yu, J., Humann, J., ... & Main, D. (2021). The Breeding Information Management System (BIMS): an online resource for crop breedingDatabase, 2021.
    Cited By
  16. Ramanauskas, K., & Igić, B. (2021). RNase-based self-incompatibility in cactiNew Phytologist, 231(5), 2039-2049.
    Cited By
  17. Li, Q., Canton, M., Wu, H., Zhang, X., Zale, J., & Mou, Z. (2021). Efficient artificial microRNA vectors for gene silencing in citrusPlant Cell Reports, 1-4.
  18. Zhao, C., Liu, X., Gong, Q., Cao, J., Shen, W., Yin, X., ... & Sun, C. (2021). Three AP2/ERF family members modulate flavonoid synthesis by regulating type IV chalcone isomerase in citrusPlant biotechnology journal, 19(4), 671.
    Cited By
  19. Liu, X. C., Lin, X. H., Liu, S. C., Zhu, C. Q., Grierson, D., Li, S. J., & Chen, K. S. (2021). The effect of NH4+ on phosphoenolpyruvate carboxykinase gene expression, metabolic flux and citrate content of citrus juice sacsPlant Physiology and Biochemistry, 167, 123-131.
    Cited By
  20. Jung, S., Cheng, C. H., Buble, K., Lee, T., Humann, J., Yu, J., ... & Main, D. (2021). Tripal MegaSearch: a tool for interactive and customizable query and download of big dataDatabase, 2021.
    Cited By
  21. Ren, H., He, Y., Qi, X., Zheng, X., Zhang, S., Yu, Z., & Hu, F. (2021). The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal valueBMC Plant Biology, 21(1), 1-11.
    Cited By
  22. Wang, F., Wu, Y., Wu, W., Huang, Y., Zhu, C., Zhang, R., ... & Zeng, J. (2021). Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infectionBMC plant biology, 21(1), 1-16.
    Cited By
  23. Merritt, B. A., Zhang, X., Triplett, E. W., Mou, Z., & Orbović, V. (2021). Selection of transgenic citrus plants based on glyphosate tolerance conferred by a citrus 5-enolpyruvylshikimate-3-phosphate synthase variantPlant Cell Reports, 40(10), 1947-1956.
    Cited By
  24. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q. S., & Luo, C. (2021). Genome-wide identification of citrus calmodulin-like genes and their expression in response to arbuscular mycorrhizal fungi colonization and droughtCanadian Journal of Plant Science, (ja).
    Cited By
  25. Al-Subhi, A. M., Al-Sadi, A. M., Al-Yahyai, R. A., Chen, Y., Mathers, T., Orlovskis, Z., ... & Hogenhout, S. A. (2021). Witches’ broom disease of lime contributes to phytoplasma epidemics and attracts insect vectorsPlant Disease, PDIS-10.
  26. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2021). Genome-wide identification of citrus histone acetyltransferase and deacetylase families and their expression in response to arbuscular mycorrhizal fungi and droughtJournal of Plant Interactions, 16(1), 367-376.
    Cited By
  27. Chin, E. L., Ramsey, J., Saha, S., Mishchuk, D., Chavez, J., Howe, K., ... & Slupsky, C. M. (2021). Multi-omics Comparison Reveals Landscape of Citrus limon and Citrus sinensis Response to ‘Candidatus Liberibacter asiaticus’PhytoFrontiers™, 1(2), 76-84.
    Cited By
  28. Wenkai, H., Jingyan, W., Lexun, M., Feiyan, Z., Luping, J., Yu, Z., ... & Wei, G. (2021). Identification of key genes in the biosynthesis pathways related to terpenoids, alkaloids and flavonoids in fruits of Zanthoxylum armatumScientia Horticulturae, 290, 110523.
    Cited By
  29. Zhong, Y., Cheng, C., Moniruzzaman, M., Jiang, B., Jiang, N., & Zhong, G. (2021). Expression of miRNAs and their target genes in roots of ‘Sanhu’tangerine (Citrus reticulata blanco cv.‘Sanhu’) in response to Candidatus Liberibacter asiaticus infectionJournal of Plant Diseases and Protection, 128(2), 407-420.
    Cited By
  30. García S, A., & Casamayor, J. C. (2021). On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the GenomeBMC bioinformatics, 22(13), 1-26.
    Cited By
  31. Ribeiro, C., Xu, J., Teper, D., Lee, D., & Wang, N. (2021). The transcriptome landscapes of citrus leaf in different developmental stagesPlant Molecular Biology, 1-18.
    Cited By
  32. Gong, J., Zeng, Y., Meng, Q., Guan, Y., Li, C., Yang, H., ... & Wang, P. (2021). Red light-induced kumquat fruit coloration is attributable to increased carotenoid metabolism regulated by FcrNAC22. Journal of Experimental Botany, 72(18), 6274-6290.
    Cited By
  33. Abutineh, M., Pizzo, N., Nifakos, N., Jin, X. L., Harlin, J. M., & Zhang, X. H. (2021). Genomic Analysis for Citrus Disease DetectionOBM Genetics5(1), 1-1.
    Cited By
  34. Jung, S., Lee, T., Gasic, K., Campbell, B. T., Yu, J., Humann, J., ... & Main, D. (2021). The Breeding Information Management System (BIMS): an online resource for crop breeding. Database, 2021, baab054.
    Cited By
  35. Zhao, C., Liu, X., Gong, Q., Cao, J., Shen, W., Yin, X., ... & Sun, C. (2021). Three AP2/ERF family members modulate flavonoid synthesis by regulating type IV chalcone isomerase in citrus. Plant Biotechnology Journal, 19(4), 671-688.
    Cited By
  36. Ma, G., Zhang, L., Seoka, M., Nakata, A., Yahata, M., Shimada, T., ... & Kato, M. (2021). Characterization of a caffeic acid 8-O-methyltransferase from citrus and its function in nobiletin biosynthesis. Journal of Agricultural and Food Chemistry, 70(2), 543-553
    Cited By
  37. Merritt, B. A., Zhang, X., Triplett, E. W., Mou, Z., & Orbović, V. (2021). Selection of transgenic citrus plants based on glyphosate tolerance conferred by a citrus 5-enolpyruvylshikimate-3-phosphate synthase variant. Plant Cell Reports, 40, 1947-1956.
    Cited By
  38. Rahim, M. A., Afrin, K. S., Jung, H. J., Kim, H. T., Park, J. I., & Nou, I. S. (2021). Identification and characterization of carotenoid biosynthesis related genes in a novel dark skinned citrus mutant cultivar ‘Suneat’. Horticulture, Environment, and Biotechnology, 62, 99-111.
    Cited By
  39. Ribeiro, C., Xu, J., Teper, D., Lee, D., & Wang, N. (2021). The transcriptome landscapes of citrus leaf in different developmental stages. Plant Molecular Biology, 106, 349-366.
    Cited By
  40. Chin, E. L., Ramsey, J., Saha, S., Mishchuk, D., Chavez, J., Howe, K., ... & Slupsky, C. M. (2021). Multi-omics comparison reveals landscape of Citrus limon and Citrus sinensis response to ‘Candidatus Liberibacter asiaticus’. PhytoFrontiers™, 1(2), 76-84.
    Cited By
  41. Huang, C. Y., Araujo, K., Sánchez, J. N., Kund, G., Trumble, J., Roper, C., ... & Jin, H. (2021). A stable antimicrobial peptide with dual functions of treating and preventing citrus Huanglongbing. Proceedings of the National Academy of Sciences, 118(6), e2019628118
    Cited By
  42. Duan, J., Li, X., Zhang, J., Cheng, B., Liu, S., Li, H., ... & Chen, W. (2021). Cocktail therapy of fosthiazate and cupric-ammoniun complex for citrus huanglongbing. Frontiers in Plant Science, 12, 643971.
    Cited By
  43. Peng, A., Zou, X., He, Y., Chen, S., Liu, X., Zhang, J., ... & Zhao, X. (2021). Overexpressing a NPR1-like gene from Citrus paradisi enhanced Huanglongbing resistance in C. sinensis. Plant cell reports, 40, 529-541.
    Cited By
  44. Hu, X., Li, S., Lin, X., Fang, H., Shi, Y., Grierson, D., & Chen, K. (2021). Transcription factor CitERF16 is involved in citrus fruit sucrose accumulation by activating CitSWEET11d. Frontiers in Plant Science, 12, 809619.
    Cited By
  45. Al-Subhi, A. M., Al-Sadi, A. M., Al-Yahyai, R. A., Chen, Y., Mathers, T., Orlovskis, Z., ... & Hogenhout, S. A. (2021). Witches’ broom disease of lime contributes to phytoplasma epidemics and attracts insect vectors. Plant Disease, 105(9), 2637-2648.
    Cited By
  46. Montgomery, K. H., Brar, G., & Krishnan, V. V. (2021). Metabolomics Study at the Postharvest Conditions of Cold Storage and Fungicide (Imazalil Sulfate) Treatment in Navel Oranges and Clementine Mandarins. ACS Agricultural Science & Technology, 2(1), 79-89.
    Cited By
  47. Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2021). Genome-wide identification of citrus calmodulin-like genes and their expression in response to arbuscular mycorrhizal fungi colonization and drought. Canadian Journal of Plant Science, 102(1), 112-123.
    Cited By
  48. Jung, S., Cheng, C. H., Buble, K., Lee, T., Humann, J., Yu, J., ... & Main, D. (2021). Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database, 2021, baab023.
    Cited By
  49. Ramanauskas, K., & Igić, B. (2021). RNase‐based self‐incompatibility in cacti. New Phytologist, 231(5), 2039-2049.
    Cited By
  50. Staton, M., Cannon, E., Sanderson, L. A., Wegrzyn, J., Anderson, T., Buehler, S., ... & Ficklin, S. (2021). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings in Bioinformatics, 22(6), bbab238.
    Cited By
  51. Li, Q., Canton, M., Wu, H., Zhang, X., Zale, J., & Mou, Z. (2021). Efficient artificial microRNA vectors for gene silencing in citrus. Plant Cell Reports, 40(12), 2449-2452.

2020 (23)

  1. Zhang, C., Chaiprasongsuk, M., Chanderbali, A. S., Chen, X., Fu, J., Soltis, D. E., & Chen, F. (2020). Origin and evolution of a gibberellin‐deactivating enzyme GAMTPlant direct4(12), e00287.
    Cited By
  2. Arlotta, C., Ciacciulli, A., Strano, M. C., Cafaro, V., Salonia, F., Caruso, P., ... & Caruso, M. (2020). Disease Resistant Citrus Breeding Using Newly Developed High Resolution Melting and CAPS Protocols for Alternaria Brown Spot Marker Assisted SelectionAgronomy10(9), 1368.
    Cited By
  3. Li, Q., Qi, J., Qin, X., Dou, W., Lei, T., Hu, A., ... & Xu, L. (2020). CitGVD: a comprehensive database of citrus genomic variationsHorticulture Research7(1), 1-8.
    Cited By
  4. Shu, B., Jue, D., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2020). Genome-wide identification and expression analysis of the citrus calcium-dependent protein kinase (CDPK) genes in response to arbuscular mycorrhizal fungi colonization and drought. Biotechnology & Biotechnological Equipment34(1), 1304-1314.
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  5. Dasgupta, K., Hotton, S., Belknap, W., Syed, Y., Dardick, C., Thilmony, R., & Thomson, J. G. (2020). Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnologyBMC biotechnology20(1), 1-15.
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  6. Luo, C., Sun, Q., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Shu, B. (2020). Genome-wide identification and expression analysis of the Citrus malectin domain-containing receptor-like kinases in response to arbuscular mycorrhizal fungi colonization and droughtHorticulture, Environment, and Biotechnology61(5), 891-901.
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  7. SHU, B., CAI, D., ZHANG, F., ZHANG, D., LIU, C., WU, Q., & LUO, C. (2020). Identifying citrus CBL and CIPK gene families and their expressions in response to drought and arbuscular mycorrhizal fungi colonizationBiologia plantarum64, 773-783.
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  8. Rathod, A. R., Shah, K. D., Kotak, J. N., Ghelani, M. K., & Talaviya, J. R. (2020). Population dynamics of leaf miner, Phyllocnistis citrella (Stainton) infesting sweet orange. Journal of Entomology and Zoology Studies, 8(3), 1519-1521.
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  9. Yin, C., Zhu, H., Jiang, Y., Shan, Y., & Gong, L. (2020). Silencing dicer-like genes reduces virulence and sRNA generation in Penicillium italicum, the cause of citrus blue moldCells9(2), 363.
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  10. Gómez, L. M., Teixeira-Silva, N. S., Caserta, R., Takita, M. A., Marques, M. O., & de Souza, A. A. (2020). Overexpression of Citrus reticulata SAMT in Nicotiana tabacum increases MeSA volatilization and decreases Xylella fastidiosa symptomsPlanta252(6), 1-14.
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  11. Zhang, F., Rossignol, P., Huang, T., Wang, Y., May, A., Dupont, C., ... & Irish, V. F. (2020). Reprogramming of stem cell activity to convert thorns into branchesCurrent Biology30(15), 2951-2961.
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  12. Asins, M. J., Raga, M. V., Roca, D., & Carbonell, E. A. (2020). QTL and candidate gene analyses of rootstock-mediated mandarin fruit yield and quality traits under contrasting iron availabilitiesTree Genetics & Genomes16(6), 1-15.
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  13. Huang, X., Wang, Y., Xu, J., & Wang, N. (2020). Development of multiplex genome editing toolkits for citrus with high efficacy in biallelic and homozygous mutationsPlant molecular biology104(3), 297-307.
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  14. Bhatta, B. P., & Malla, S. (2020). Improving Horticultural Crops via CRISPR/Cas9: Current Successes and ProspectsPlants9(10), 1360.
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  15. Duhan, N., Meshram, M., Loaiza, C. D., & Kaundal, R. (2020). citSATdb: Genome-Wide Simple Sequence Repeat (SSR) Marker Database of Citrus Species for Germplasm Characterization and Crop ImprovementGenes11(12), 1486.
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  16. Liu, X., Zhao, C., Gong, Q., Wang, Y., Cao, J., Li, X., ... & Sun, C. (2020). Characterization of a caffeoyl-CoA O-methyltransferase-like enzyme involved in biosynthesis of polymethoxylated flavones in Citrus reticulataJournal of experimental botany71(10), 3066-3079.
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  17. Liu, X., Wang, Y., Chen, Y., Xu, S., Gong, Q., Zhao, C., ... & Sun, C. (2020). Characterization of a flavonoid 3’/5’/7-O-methyltransferase from Citrus reticulata and evaluation of the in vitro cytotoxicity of its methylated productsMolecules25(4), 858.
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  18. Meng, H., Feng, J., Bai, T., Jian, Z., Chen, Y., & Wu, G. (2020). Genome-wide analysis of short interspersed nuclear elements provides insight into gene and genome evolution in citrusDNA Research27(1), dsaa004.
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  19. Julião, M. H., Silva, S. R., Ferro, J. A., & Varani, A. M. (2020). A Genomic and Transcriptomic Overview of MATE, ABC, and MFS Transporters in Citrus sinensis Interaction with Xanthomonas citri subsp. citriPlants9(6), 794.
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  20. Ferrasa, A., Murata, M. M., Cofre, T. D., Cavallini, J. S., Peron, G., Julião, M. H., ... & Ferro, J. A. (2020). CitrusKB: a comprehensive knowledge base for transcriptome and interactome of Citrus spp. infected by Xanthomonas citri subsp. citri at different infection stages. Database, 2020, baaa081.
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  21. Buch, D. U., Sharma, O. A., Pable, A. A., & Barvkar, V. T. (2020). Characterization of microRNA genes from Pigeonpea (Cajanus cajan L.) and understanding their involvement in drought stress. Journal of Biotechnology, 321, 23-34.
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  22. Ren, Y., Hua, Q., Pan, J., Zhang, Z., Zhao, J., He, X., ... & Hu, G. (2020). SKP1-like protein, CrSKP1-e, interacts with pollen-specific F-box proteins and assembles into SCF-type E3 complex in ‘Wuzishatangju’(Citrus reticulata Blanco) pollenPeerJ8, e10578.
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  23. Jamil, I. N., Remali, J., Azizan, K. A., Nor Muhammad, N. A., Arita, M., Goh, H. H., & Aizat, W. M. (2020). Systematic multi-omics integration (MOI) approach in plant systems biology. Frontiers in plant science, 11, 944.
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2019 (16)

  1.  Ferreira, M. D. G., Castro, J. A., Silva, R. J. S., & Micheli, F. (2019). HVA22 from citrus: A small gene family whose some members are involved in plant response to abiotic stressPlant Physiology and Biochemistry142, 395-404.
    Cited By
  2. Li, S. J., Xie, X. L., Liu, S. C., Chen, K. S., & Yin, X. R. (2019). Auto-and mutual-regulation between two CitERFs contribute to ethylene-induced citrus fruit degreeningFood chemistry299, 125163.
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  3. Chagné, D., Vanderzande, S., Kirk, C., Profitt, N., Weskett, R., Gardiner, S. E., ... & Bassil, N. V. (2019). Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus× domestica Borkh.) using the OpenArray® platformHorticulture research6(1), 1-16.
    Cited By
  4. Ouyang, Z. G., Mi, L. F., Duan, H. H., Hu, W., Chen, J. M., Peng, T., & Zhong, B. L. (2019). Differential expressions of citrus CAMTAs during fruit development and responses to abiotic stressesBIOLOGIA PLANTARUM63(1), 354-364.
  5. Spoor, S., Cheng, C. H., Sanderson, L. A., Condon, B., Almsaeed, A., Chen, M., ... & Bett, K. (2019). Tripal v3: an ontology-based toolkit for construction of FAIR biological community databasesDatabase2019.
  6. Hodgson, H., De La Peña, R., Stephenson, M. J., Thimmappa, R., Vincent, J. L., Sattely, E. S., & Osbourn, A. (2019). Identification of key enzymes responsible for protolimonoid biosynthesis in plants: Opening the door to azadirachtin productionProceedings of the National Academy of Sciences116(34), 17096-17104.
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  7. Deng, H., Cai, Z., Xiang, S., Guo, Q., Huang, W., & Liang, G. (2019). Karyotype analysis of diploid and spontaneously occurring tetraploid blood orange (Citrus sinensis (L.) Osbeck) using multicolor FISH with repetitive DNA sequences as probesFrontiers in Plant Science10, 331.
  8. Miao, L., Chen, C., Yao, L., Tran, J., & Zhang, H. (2019). Genome-wide identification, characterization, interaction network and expression profile of GAPDH gene family in sweet orange (Citrus sinensis)PeerJ7, e7934.
    Cited By
  9. Cao, M., Zhang, S., Li, M., Liu, Y., Dong, P., Li, S., ... & Zhou, Y. (2019). Discovery of Four Novel Viruses Associated with Flower Yellowing Disease of Green Sichuan Pepper (Zanthoxylum armatum) by Virome AnalysisViruses11(8), 696.
    Cited By
  10. Buble, K., Jung, S., Humann, J. L., Yu, J., Cheng, C. H., Lee, T., ... & Main, D. (2019). Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. Database, 2019.
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  11. Chen, F., Song, Y., Li, X., Chen, J., Mo, L., Zhang, X., ... & Zhang, L. (2019). Genome sequences of horticultural plants: past, present, and future. Horticulture research, 6.
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  12. Zheng, Y., Wu, S., Bai, Y., Sun, H., Jiao, C., Guo, S., ... & Fei, Z. (2019). Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. Nucleic acids research, 47(D1), D1128-D1136.
    Cited By
  13. Deng, H., Xiang, S., Guo, Q., Jin, W., Cai, Z., & Liang, G. (2019). Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications. BMC plant biology, 19, 1-11.
    Cited By
  14. Liu, Y., Tahir ul Qamar, M., Feng, J. W., Ding, Y., Wang, S., Wu, G., ... & Chen, L. L. (2019). Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species. BMC plant biology, 19(1), 1-16.
    Cited By
  15. Deng, H., Cai, Z., Xiang, S., Guo, Q., Huang, W., & Liang, G. (2019). Karyotype analysis of diploid and spontaneously occurring tetraploid blood orange [Citrus sinensis (L.) Osbeck] using multicolor FISH with repetitive DNA sequences as probes. Frontiers in Plant Science, 10, 331.
    Cited By
  16. De Ollas, C., Morillón, R., Fotopoulos, V., Puértolas, J., Ollitrault, P., Gómez-Cadenas, A., & Arbona, V. (2019). Facing climate change: biotechnology of iconic Mediterranean woody crops. Frontiers in Plant Science, 427.
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2018 (8)

  1. Long, J. M., Liu, C. Y., Feng, M. Q., Liu, Y., Wu, X. M., & Guo, W. W. (2018). miR156-SPL modules regulate induction of somatic embryogenesis in citrus callusJournal of experimental botany69(12), 2979-2993.
    Cited By
  2. Falk, T., Herndon, N., Grau, E., Buehler, S., Richter, P., Zaman, S., ... & Feltus, F. A. (2018). Growing and cultivating the forest genomics database, TreeGenes. Database2018.
    Cited By
  3. Guo, Z. H., Shu, W. S., Cheng, H. Y., Wang, G. M., Qi, K. J., Zhang, S. L., & Gu, C. (2018). Expression analysis of TCP genes in peach reveals an involvement of PpTCP. A2 in ethylene biosynthesis during fruit ripeningPlant Molecular Biology Reporter36(4), 588-595.
    Cited By
  4. Li, X., Si, W., Qin, Q., Wu, H., & Jiang, H. (2018). Deciphering evolutionary dynamics of SWEET genes in diverse plant lineagesScientific reports8(1), 1-12.
    Cited By
  5. Mahesh, H. B., Subba, P., Advani, J., Shirke, M. D., Loganathan, R. M., Chandana, S. L., ... & Gowda, M. (2018). Multi-omics driven assembly and annotation of the sandalwood (Santalum album) genome. Plant physiology, 176(4), 2772-2788.
    Cited By
  6. Reiser, L., Harper, L., Freeling, M., Han, B., & Luan, S. (2018). FAIR: a call to make published data more findable, accessible, interoperable, and reusable. Molecular plant, 11(9), 1105-1108.
    Cited By
  7. Gomez-Casati, D. F., Busi, M. V., Barchiesi, J., Peralta, D. A., Hedin, N., & Bhadauria, V. (2018). Applications of bioinformatics to plant biotechnology. Current issues in molecular biology, 27(1), 89-104.
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  8. Imai, A., Nonaka, K., Kuniga, T., Yoshioka, T., & Hayashi, T. (2018). Genome-wide association mapping of fruit-quality traits using genotyping-by-sequencing approach in citrus landraces, modern cultivars, and breeding lines in Japan. Tree genetics & genomes, 14, 1-15.
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2017 (12)

  1. Castro, J. A., Ferreira, M. D. G., Silva, R. J. S., Andrade, B. S., & Micheli, F. (2017). Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. OsbPloS one12(5).
    Cited By
  2. Jung, S., Lee, T., Cheng, C. H., Ficklin, S., Yu, J., Humann, J., & Main, D. (2017). Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databasesDatabase2017.
    Cited By
  3. Chery, J. G., Sass, C., & Specht, C. D. (2017). Development of single‐copy nuclear intron markers for species‐level phylogenetics: Case study with Paullinieae (Sapindaceae) 1Applications in plant sciences5(9), 1700051.
    Cited By
  4. Rawat, N., Kumar, B., Albrecht, U., Du, D., Huang, M., Yu, Q., ... & Deng, Z. (2017). Genome resequencing and transcriptome profiling reveal structural diversity and expression patterns of constitutive disease resistance genes in Huanglongbing-tolerant Poncirus trifoliata and its hybridsHorticulture research4(1), 1-8.
    Cited By
  5. Barichello, D., Farinacio, R., dos Santos, C. C. N., Andrade, G. A., Nagashima, G. T., Garbúglio, D. D., ... & Carlos, E. F. (2017). Drought-tolerant transgenic Swingle Citrumelo controls accumulation of proline modulating the expression of key genes of the proline metabolismCitrus Research & Technology38(2), 1-12.
  6. Roselli, S., Olry, A., Vautrin, S., Coriton, O., Ritchie, D., Galati, G., ... & Bourgaud, F. (2017). A bacterial artificial chromosome (BAC) genomic approach reveals partial clustering of the furanocoumarin pathway genes in parsnipThe Plant Journal89(6), 1119-1132.
    Cited By
  7. da Silva, E. G., Ito, T. M., & de Souza, S. G. H. (2017). 'In silico'genome-wide identification and phylogenetic analysis of the WRKY transcription factor family in sweet orange ('Citrus sinensis')Australian Journal of Crop Science11(6), 716.
    Cited By
  8. Doud, M. M., Wang, Y., Hoffman, M. T., Latza, C. L., Luo, W., Armstrong, C. M., ... & Duan, Y. (2017). Solar thermotherapy reduces the titer of Candidatus Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB-affected citrus plantsHorticulture research4(1), 1-9.
    Cited By
  9. Yu, Q., Chen, C., Du, D., Huang, M., Yao, J., Yu, F., ... & Gmitter, F. G. (2017). Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’Horticulture research4(1), 1-15.
    Cited By
  10. Yu, Y., Bai, J., Chen, C., Plotto, A., Yu, Q., Baldwin, E. A., & Gmitter, F. G. (2017). Identification of QTLs controlling aroma volatiles using a ‘Fortune’x ‘Murcott’(Citrus reticulata) population. BMC genomics, 18, 1-16.
    Cited By
  11. Minamikawa, M. F., Nonaka, K., Kaminuma, E., Kajiya-Kanegae, H., Onogi, A., Goto, S., ... & Iwata, H. (2017). Genome-wide association study and genomic prediction in citrus: potential of genomics-assisted breeding for fruit quality traits. Scientific reports, 7(1), 4721
    Cited By
  12. Lim, J., & Park, K. (2017). A fast algorithm for the all-pairs suffix–prefix problem. Theoretical Computer Science, 698, 14-24.
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2016 (24)

  1. Yin, X. R., Xie, X. L., Xia, X. J., Yu, J. Q., Ferguson, I. B., Giovannoni, J. J., & Chen, K. S. (2016). Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreeningThe Plant Journal86(5), 403-412.
    Cited By
  2. Jung, S., Lee, T., Ficklin, S., Yu, J., Cheng, C. H., & Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in ChadoDatabase2016.
    Cited By
  3. Wang, Y., Zhou, L., Yu, X., Stover, E., Luo, F., & Duan, Y. (2016). Transcriptome profiling of Huanglongbing (HLB) tolerant and susceptible citrus plants reveals the role of basal resistance in HLB toleranceFrontiers in plant science7, 933.
    Cited By
  4. Nwugo, C. C., Doud, M. S., Duan, Y. P., & Lin, H. (2016). Proteomics analysis reveals novel host molecular mechanisms associated with thermotherapy of ‘Ca. Liberibacter asiaticus’-infected citrus plants. BMC plant biology16(1), 253.
    Cited By
  5. Shimizu, T., Kitajima, A., Nonaka, K., Yoshioka, T., Ohta, S., Goto, S., ... & Kaminuma, E. (2016). Hybrid origins of citrus varieties inferred from DNA marker analysis of nuclear and organelle genomesPloS one11(11).
    Cited By
  6. Fujii, H., Ohta, S., Nonaka, K., Katayose, Y., Matsumoto, T., Endo, T., ... & Shimada, T. (2016). Parental diagnosis of satsuma mandarin (Citrus unshiu Marc.) revealed by nuclear and cytoplasmic markersBreeding science, 16060.
    Cited By
  7. Reyes, C. A., De Francesco, A., Ocolotobiche, E. E., Costa, N., & García, M. L. (2016). Uncontrolled Citrus psorosis virus infection in Citrus sinensis transgenic plants expressing a viral 24K-derived hairpin that does not trigger RNA silencingPhysiological and Molecular Plant Pathology94, 149-155.
    Cited By
  8. Terol, J., Tadeo, F., Ventimilla, D., & Talon, M. (2016). An RNA‐Seq‐based reference transcriptome for CitrusPlant biotechnology journal14(3), 938-950.
    Cited By
  9. Ramos-González, P. L., Chabi-Jesus, C., Guerra-Peraza, O., Breton, M. C., Arena, G. D., Nunes, M. A., ... & Freitas-Astúa, J. (2016). Phylogenetic and molecular variability studies reveal a new genetic clade of Citrus leprosis virus CViruses8(6), 153.
    Cited By
  10. Reyes, C. A., Ocolotobiche, E. E., Marmisollé, F. E., Robles Luna, G., Borniego, M. B., Bazzini, A. A., ... & García, M. L. (2016). Citrus psorosis virus 24 K protein interacts with citrus miRNA precursors, affects their processing and subsequent miRNA accumulation and target expressionMolecular plant pathology17(3), 317-329.
    Cited By
  11. Ayadi, M., Hanana, M., Kharrat, N., Merchaoui, H., Marzoug, R. B., Lauvergeat, V., ... & Mzid, R. (2016). The WRKY transcription factor family in Citrus: Valuable and useful candidate genes for citrus breedingApplied biochemistry and biotechnology180(3), 516-543.
    Cited By
  12. Yu, Y., Chen, C., & Gmitter, F. G. (2016). QTL mapping of mandarin (Citrus reticulata) fruit characters using high-throughput SNP markersTree genetics & genomes12(4), 77.
    Cited By
  13. Raga, V., Intrigliolo, D. S., Bernet, G. P., Carbonell, E. A., & Asins, M. J. (2016). Genetic analysis of salt tolerance in a progeny derived from the citrus rootstocks Cleopatra mandarin and trifoliate orange. Tree genetics & genomes12(3), 34.
    Cited By
  14. Li, S. J., Yin, X. R., Xie, X. L., Allan, A. C., Ge, H., Shen, S. L., & Chen, K. S. (2016). The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4Scientific reports6, 20151.
    Cited By
  15. Wu, J., Chen, L., Lin, D., Ma, Z., & Deng, X. (2016). Development and Application of a Multiplex Real-Time PCR Assay as an Indicator of Potential Allergenicity in Citrus FruitsJournal of agricultural and food chemistry64(47), 9089-9098.
    Cited By
  16. Devaiah, S. P., Owens, D. K., Sibhatu, M. B., Sarkar, T. R., Strong, C. L., Mallampalli, V. K., ... & Wamucho, A. (2016). Identification, recombinant expression, and biochemical analysis of putative secondary product glucosyltransferases from Citrus paradisiJournal of agricultural and food chemistry64(9), 1957-1969.
    Cited By
  17. Iwata, H., Minamikawa, M. F., Kajiya-Kanegae, H., Ishimori, M., & Hayashi, T. (2016). Genomics-assisted breeding in fruit trees. Breeding Science, 66(1), 100-115.
    Cited By
  18. Shiratake, K., & Suzuki, M. (2016). Omics studies of citrus, grape and rosaceae fruit trees. Breeding Science, 66(1), 122-138.
    Cited By
  19. Nwugo, C. C., Doud, M. S., Duan, Y. P., & Lin, H. (2016). Proteomics analysis reveals novel host molecular mechanisms associated with thermotherapy of ‘Ca. Liberibacter asiaticus’-infected citrus plants. BMC Plant Biology, 16(1), 1-15.
    Cited By
  20. Fujii, H., Ohta, S., Nonaka, K., Katayose, Y., Matsumoto, T., Endo, T., ... & Shimada, T. (2016). Parental diagnosis of satsuma mandarin (Citrus unshiu Marc.) revealed by nuclear and cytoplasmic markers. Breeding science, 66(5), 683-691.
    Cited By
  21. McIntosh, C. A., & Owens, D. K. (2016). Advances in flavonoid glycosyltransferase research: integrating recent findings with long-term citrus studies. Phytochemistry Reviews, 15, 1075-1091.
    Cited By
  22. Li, H., Yang, L. T., Qi, Y. P., Guo, P., Lu, Y. B., & Chen, L. S. (2016). Aluminum toxicity-induced alterations of leaf proteome in two citrus species differing in aluminum tolerance. International Journal of Molecular Sciences, 17(7), 1180.
    Cited By
  23. Lange, B. M. (2016). Online resources for gene discovery and biochemical research with aromatic and medicinal plants. Phytochemistry Reviews, 15, 489-510.
    Cited By
  24. Jung, S., Lee, T., Ficklin, S., Yu, J., Cheng, C. H., & Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database, 2016, baw010.
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2015 (11)

  1. Li, S. J., Liu, X. J., Xie, X. L., Grierson, D., Yin, X. R., & Chen, K. S. (2015). CrMYB73, a PH-like gene, contributes to citric acid accumulation in citrus fruit. Scientia Horticulturae197, 212-217.
    Cited By
  2. Xu, M., Li, Y., Zheng, Z., Dai, Z., Tao, Y., & Deng, X. (2015). Transcriptional analyses of mandarins seriously infected by ‘Candidatus Liberibacter asiaticus’PLoS One10(7).
    Cited By
  3. Lin, Q., Jiang, Q., Lin, J., Wang, D., Li, S., Liu, C., ... & Chen, K. (2015). Heat shock transcription factors expression during fruit development and under hot air stress in Ponkan (Citrus reticulata Blanco cv. Ponkan) fruitGene559(2), 129-136.
    Cited By
  4. Lin, Q., Wang, C., Dong, W., Jiang, Q., Wang, D., Li, S., ... & Chen, K. (2015). Transcriptome and metabolome analyses of sugar and organic acid metabolism in Ponkan (Citrus reticulata) fruit during fruit maturationGene554(1), 64-74.
    Cited By
  5. Ito, T. M., Rampim, M. C., Vieira, C. E., Polido, P. B., Kaschuk, G., & de Souza, S. G. H. (2015). Modulation of the transcriptional activity of the AP2/ERF family (DREB genes) in orange (Citrus sinensis) leaves subjected to drought stressAfrican Journal of Biotechnology14(11), 901-909.
  6. Terol, J., Ibañez, V., Carbonell, J., Alonso, R., Estornell, L. H., Licciardello, C., ... & Talon, M. (2015). Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activationBMC genomics16(1), 69.
    Cited By
  7. Lin, Q., Li, S., Dong, W., Feng, C., Yin, X., Xu, C., ... & Chen, K. (2015). Involvement of CitCHX and CitDIC in developmental-related and postharvest-hot-air driven citrate degradation in citrus fruitsPloS one10(3).
    Cited By
  8. Asins, M. J., Raga, V., Bernet, G. P., & Carbonell, E. A. (2015). Genetic analysis of reproductive, vegetative and fruit quality traits to improve Citrus varietiesTree genetics & genomes11(6), 117.
    Cited By
  9. Wang, Y., Zhou, L., Li, D., Dai, L., Lawton-Rauh, A., Srimani, P. K., ... & Luo, F. (2015). Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genesPloS one10(3).
    Cited By
  10. Roy, A., Stone, A. L., Shao, J., Otero-Colina, G., Wei, G., Choudhary, N., ... & Schneider, W. L. (2015). Identification and molecular characterization of nuclear Citrus leprosis virus, a member of the proposed Dichorhavirus genus infecting multiple Citrus species in MexicoPhytopathology105(4), 564-575.
    Cited By
  11. da Costa Silva, S., Mendes, S., dos Santos Soares Filho, W., & Pedrosa-Harand, A. (2015). Chromosome homologies between Citrus and Poncirus—the comparative cytogenetic map of mandarin (Citrus reticulata)Tree genetics & genomes11(1), 811.
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2014 (10)

  1. Chagné, D., Crowhurst, R. N., Pindo, M., Thrimawithana, A., Deng, C., Ireland, H., ... & Bianco, L. (2014). The draft genome sequence of European pear (Pyrus communis L.‘Bartlett’)PloS one9(4).
    Cited By
  2. Xie, X. L., Shen, S. L., Yin, X. R., Xu, Q., Grierson, D., Ferguson, I., & Chen, K. S. (2014). Isolation, classification and transcription profiles of the AP2/ERF transcription factor superfamily in citrusMolecular biology reports41(7), 4261-4271.
    Cited By
  3. Azim, M. K., Khan, I. A., & Zhang, Y. (2014). Characterization of mango (Mangifera indica L.) transcriptome and chloroplast genomePlant molecular biology85(1-2), 193-208.
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  4. Caruso, M., Distefano, G., Paolo, D. P., La Malfa, S., Russo, G., Gentile, A., & Recupero, G. R. (2014). High resolution melting analysis for early identification of citrus hybrids: A reliable tool to overcome the limitations of morphological markers and assist rootstock breedingScientia horticulturae180, 199-206.
    Cited By
  5. Ito, T. M., Polido, P. B., Rampim, M. C., Kaschuk, G., & Souza, S. G. (2014). Genome-wide identification and phylogenetic analysis of the AP2/ERF gene superfamily in sweet orange (Citrus sinensis)Genet Mol Res13(3), 7839-7851.
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  6. Pinheiro, T. T., Figueira, A., & Latado, R. R. (2014). Early-flowering sweet orange mutant ‘x11’as a model for functional genomic studies of CitrusBMC research notes7(1), 511.
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  7. Tecle, I. Y., Edwards, J. D., Menda, N., Egesi, C., Rabbi, I. Y., Kulakow, P., ... & Mueller, L. A. (2014). solGS: a web-based tool for genomic selectionBMC bioinformatics15(1), 398.
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  8. Pereira, A. L., Carazzolle, M. F., Abe, V. Y., de Oliveira, M. L., Domingues, M. N., Silva, J. C., ... & Benedetti, C. E. (2014). Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response. BMC genomics15(1), 157.
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  9. Licciardello, C., D’Agostino, N., Traini, A., Recupero, G. R., Frusciante, L., & Chiusano, M. L. (2014). Characterization of the glutathione S-transferase gene family through ESTs and expression analyses within common and pigmented cultivars of Citrus sinensis (L.) OsbeckBMC plant biology14(1), 39.
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  10. Wisniewski, M., Nassuth, A., Teulieres, C., Marque, C., Rowland, J., Cao, P. B., & Brown, A. (2014). Genomics of cold hardiness in woody plants. Critical reviews in plant sciences, 33(2-3), 92-124.
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2013 (16)

  1. An, C., Orbovic, V., & Mou, Z. (2013). An efficient intragenic vector for generating intragenic and cisgenic plants in citrus. American Journal of Plant Sciences4(11), 2131.
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  2. Bernardi, J., Mazza, R., Caruso, P., Recupero, G. R., Marocco, A., & Licciardello, C. (2013). Use of an expressed sequence tag-based method for single nucleotide polymorphism identification and discrimination of Citrus species and cultivars. Molecular breeding31(3), 705-718.
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  3. Peng, G., Xie, X. L., Jiang, Q., Song, S., & Xu, C. J. (2013). Chlorophyll a/b binding protein plays a key role in natural and ethylene-induced degreening of Ponkan (Citrus reticulata Blanco)Scientia Horticulturae160, 37-43.
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  4. Mercati, F., Riccardi, P., Leebens-Mack, J., Abenavoli, M. R., Falavigna, A., & Sunseri, F. (2013). Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.)Plant science203, 115-123.
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  5. Ma, G., Zhang, L., Matsuta, A., Matsutani, K., Yamawaki, K., Yahata, M., ... & Kato, M. (2013). Enzymatic formation of β-citraurin from β-cryptoxanthin and zeaxanthin by carotenoid cleavage dioxygenase4 in the flavedo of citrus fruitPlant Physiology163(2), 682-695.
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  6. Shangguan, L., Han, J., Kayesh, E., Sun, X., Zhang, C., Pervaiz, T., ... & Fang, J. (2013). Evaluation of genome sequencing quality in selected plant species using expressed sequence tagsPLoS One8(7).
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  7. Iorio, R. A., Del Duca, S., Calamelli, E., Pula, C., Lodolini, M., Scamardella, F., ... & Ricci, G. (2013). Citrus allergy from pollen to clinical symptomsPLoS One8(1).
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  8. Peng, G., Wang, C., Song, S., Fu, X., Azam, M., Grierson, D., & Xu, C. (2013). The role of 1-deoxy-d-xylulose-5-phosphate synthase and phytoene synthase gene family in citrus carotenoid accumulationPlant Physiology and Biochemistry71, 67-76.
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  9. Roy, A., Shao, J., Hartung, J. S., Schneider, W., & Brlansky, R. H. (2013). A case study on discovery of novel citrus leprosis virus cytoplasmic type 2 utilizing small RNA libraries by next generation sequencing and bioinformatic analysesJ. Data Mining Genomics Proteomics4(129), 2153-0602.
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  10. Fujii, H., Shimada, T., Nonaka, K., Kita, M., Kuniga, T., Endo, T., ... & Omura, M. (2013). High-throughput genotyping in citrus accessions using an SNP genotyping arrayTree genetics & genomes9(1), 145-153.
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  11. Sanderson, L. A., Ficklin, S. P., Cheng, C. H., Jung, S., Feltus, F. A., Bett, K. E., & Main, D. (2013). Tripal v1. 1: a standards-based toolkit for construction of online genetic and genomic databasesDatabase2013.
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  12. Serra, I. A., Bernardo, L., Spadafora, A., Faccioli, P., Canton, C., & Mazzuca, S. (2013). The Citrus clementina putative allergens: from proteomic analysis to structural featuresJournal of agricultural and food chemistry61(37), 8949-8958.
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  13. Nwugo, C. C., Duan, Y., & Lin, H. (2013). Study on citrus response to huanglongbing highlights a down-regulation of defense-related proteins in lemon plants upon ‘Ca. Liberibacter asiaticus’ infectionPloS one8(6).
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  14. de Carvalho, K., de Campos, M. K. F., Domingues, D. S., Pereira, L. F. P., & Vieira, L. G. E. (2013). The accumulation of endogenous proline induces changes in gene expression of several antioxidant enzymes in leaves of transgenic Swingle citrumeloMolecular Biology Reports40(4), 3269-3279.
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  15. Nwugo, C. C., Lin, H., Duan, Y., & Civerolo, E. L. (2013). The effect of ‘Candidatus Liberibacter asiaticus’ infection on the proteomic profiles and nutritional status of pre-symptomatic and symptomatic grapefruit (Citrus paradisi) plantsBMC plant biology13(1), 59.
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  16. Chen, C., & Gmitter Jr, F. G. (2013). Mining of haplotype-based expressed sequence tag single nucleotide polymorphismsin citrus. BMC genomics, 14, 1-11.
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2012 (7)

  1. Gmitter, F. G., Chen, C., Machado, M. A., De Souza, A. A., Ollitrault, P., Froehlicher, Y., & Shimizu, T. (2012). Citrus genomicsTree Genetics & Genomes8(3), 611-626.
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  2. Cheng, J., Khan, M. A., Qiu, W. M., Li, J., Zhou, H., Zhang, Q., ... & Li, S. (2012). Diversification of genes encoding granule-bound starch synthase in monocots and dicots is marked by multiple genome-wide duplication eventsPLoS One7(1).
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  3. Li, Z. T., Gmitter, F. G., Grosser, J. W., Chen, C., & Gray, D. J. (2012). Isolation and characterization of a novel anthocyanin-promoting MYBA gene family in CitrusTree genetics & genomes8(4), 675-685.
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  4. Voo, S. S., Grimes, H. D., & Lange, B. M. (2012). Assessing the biosynthetic capabilities of secretory glands in Citrus peelPlant physiology159(1), 81-94.
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  5. Zhang, L., Ma, G., Shirai, Y., Kato, M., Yamawaki, K., Ikoma, Y., & Matsumoto, H. (2012). Expression and functional analysis of two lycopene β-cyclases from citrus fruitsPlanta236(4), 1315-1325.
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  6. Romero, P., Lafuente, M. T., & Rodrigo, M. J. (2012). The Citrus ABA signalosome: identification and transcriptional regulation during sweet orange fruit ripening and leaf dehydrationJournal of Experimental Botany63(13), 4931-4945.
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  7. Gambino, G., & Gribaudo, I. (2012). Genetic transformation of fruit trees: current status and remaining challenges. Transgenic research, 21(6), 1163-1181.
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2011 (4)

  1. Hyun, T. K., & Kim, J. S. (2011). Genomic identification of putative allergen genes in woodland strawberry (Fragaria vesca) and mandarin orange (Citrus clementina)Plant Omics J4(7), 428-34.
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  2. Belknap, W. R., Wang, Y., Huo, N., Wu, J., Rockhold, D. R., Gu, Y. Q., & Stover, E. (2011). Characterizing the citrus cultivar Carrizo genome through 454 shotgun sequencingGenome54(12), 1005-1015.
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  3. Ficklin, S. P., Sanderson, L. A., Cheng, C. H., Staton, M. E., Lee, T., Cho, I. H., ... & Main, D. (2011). Tripal: a construction toolkit for online genome databasesDatabase2011.
    Cited By
  4. Jung, S., Menda, N., Redmond, S., Buels, R. M., Friesen, M., Bendana, Y., ... & Bett, K. E. (2011). The chado natural diversity module: a new generic database schema for large-scale phenotyping and genotyping dataDatabase2011.
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