Peer-reviewed papers citing CGD
2023
- da Silva, M. C., Pinto, P. I., Guerra, R., Duarte, A., Power, D. M., & Marques, N. T. (2023). Gene transcripts responsive to drought stress identified in Citrus macrophylla bark tissue transcriptome have a modified response in plants infected by Citrus tristeza virus. Scientia Horticulturae, 307, 111526.
2022
- Li, S. J., Liu, S. C., Lin, X. H., Grierson, D., Yin, X. R., & Chen, K. S. (2022). Citrus heat shock transcription factor CitHsfA7‐mediated citric acid degradation in response to heat stress. Plant, Cell & Environment, 45(1), 95-104.
- Matsumoto, Y., Kubo, T., Itami, Y., Islam, M., Watanabe, S., & Kotoda, N. (2022). QTL mapping of polymethoxyflavone (PMF) accumulation in citrus. Tree Genetics & Genomes, 18(1), 1-13.
- Zhang, M., Zhu, Y., Yang, H., Li, X., Xu, R., Zhu, F., & Cheng, Y. (2022). CsNIP5; 1 acts as a multifunctional regulator to confer water loss tolerance in citrus fruit. Plant Science, 316, 111150.
- Zhang, H., Li, X. Y., Lin, M. L., Hu, P. P., Lai, N. W., Huang, Z. R., & Chen, L. S. (2022). The aluminum distribution and translocation in two citrus species differing in aluminum tolerance. BMC Plant Biology, 22(1), 1-11.
- Shi, Q. F., Long, J. M., Yin, Z. P., Jiang, N., Feng, M. Q., Zheng, B., ... & Wu, X. M. (2022). miR171 modulates induction of somatic embryogenesis in citrus callus. Plant Cell Reports, 1-13.
- Bordoloi, K. S., Baruah, P. M., Das, M., & Agarwala, N. (2022). Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon. Food Bioscience, 46, 101448.
- Gill, K., Kumar, P., Kumar, A., Kapoor, B., Sharma, R., & Joshi, A. K. (2022). Comprehensive mechanistic insights into the citrus genetics, breeding challenges, biotechnological implications, and omics-based interventions. Tree Genetics & Genomes, 18(2), 1-26.
- Xin, Y. H., Wu, Y. X., Qiao, B., Su, L., Xie, S. Q., & Ling, P. (2022). Evaluation on the phenotypic diversity of Calamansi (Citrus microcarpa) germplasm in Hainan island. Scientific Reports, 12(1), 1-12.
- Carraro, E., & Di Iorio, A. (2022). Eligible strategies of drought response to improve drought resistance in woody crops: a mini-review. Plant Biotechnology Reports, 1-18.
- Hou, H., Kong, X., Zhou, Y., Yin, C., Jiang, Y., Qu, H., & Li, T. (2022). Genome-wide identification and characterization of bZIP transcription factors in relation to litchi (Litchi chinensis Sonn.) fruit ripening and postharvest storage. International Journal of Biological Macromolecules.
- Higgins, S. A., Mann, M., & Heck, M. (2022). Strain tracking of ‘Candidatus Liberibacter asiaticus’, citrus greening disease pathogen, enabled by high-resolution microbiome analysis of the Asian citrus psyllid. Phytopathology, (ja).
- Liu, S., Li, Y., Fang, H., Huang, B., Zhao, C., Sun, C., ... & Chen, K. (2022). Genome-wide identification and expression analysis of MATE gene family in citrus fruit (Citrus clementina). Genomics, 114(5), 110446.
- Aguila, L. C. R., Moreano, J. P. S., Akutse, K. S., Bamisile, B. S., Liu, J., Haider, F. U., ... & Wang, L. (2022). Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana. International Journal of Biological Macromolecules.
- Chen, C., Peng, X., Wan, C., Zhang, Y., Gan, Z., Zeng, J., ... & Chen, J. (2022). Lignin Biosynthesis Pathway and Redox Balance Act Synergistically in Conferring Resistance against Penicillium italicum Infection in 7-Demethoxytylophorine-Treated Navel Orange. Journal of Agricultural and Food Chemistry, 70(26), 8111-8123.
- Hui, W., Zheng, H., Fan, J., Wang, J., Saba, T., Wang, K., ... & Gong, W. (2022). Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum. BMC genomics, 23(1), 1-21.
- Tian, Y., Zeng, J., & Fan, R. (2022). Comprehensive Analysis of N6-Methyladenosine Regulatory Genes from Citrus grandis and Expression Profilings in the Fruits of “Huajuhong”(C. grandis “Tomentosa”) during Various Development Stages. Horticulturae, 8(5), 462.
2021
- Hu, X., Li, S., Lin, X., Fang, H., Shi, Y., Grierson, D., & Chen, K. (2021). Transcription Factor CitERF16 Is Involved in Citrus Fruit Sucrose Accumulation by Activating CitSWEET11d. Frontiers in plant science, 12, 809619-809619.
- Catalano, C., Di Guardo, M., Distefano, G., Caruso, M., Nicolosi, E., Deng, Z., ... & La Malfa, S. G. (2021). Biotechnological Approaches for Genetic Improvement of Lemon (Citrus limon (L.) Burm. f.) against Mal Secco Disease. Plants, 10(5), 1002.
- Montgomery, K. H., Brar, G., & Krishnan, V. V. (2021). Metabolomics Study at the Postharvest Conditions of Cold Storage and Fungicide (Imazalil Sulfate) Treatment in Navel Oranges and Clementine Mandarins. ACS Agricultural Science & Technology.
- Ma, G., Zhang, L., Seoka, M., Nakata, A., Yahata, M., Shimada, T., ... & Kato, M. (2021). Characterization of a Caffeic Acid 8-O-Methyltransferase from Citrus and Its Function in Nobiletin Biosynthesis. Journal of agricultural and food chemistry.
- Bordoloi, K. S., Baruah, P., Das, M., & Agarwala, N. (2021). Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon. Food Bioscience, 101448.
- Guardo, M. D., Moretto, M., Moser, M., Catalano, C., Troggio, M., Deng, Z., ... & Gentile, A. (2021). The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.). Tree Genetics & Genomes, 17(6), 1-12.
- Tian, Y., Fan, R., & Zeng, J. (2021). Comprehensive Analysis of Jumonji Domain C Family from Citrus grandis and Expression Profilings in the Exocarps of “Huajuhong”(Citrus grandis “Tomentosa”) during Various Development Stages. Horticulturae, 7(12), 592.
- Flores-de la Rosa, F. R., Estudillo, E. V., Santillán-Mendoza, R., Rodriguez-Quibrera, C. G., & Adame-García, J. (2021). EFFECT OF THE GABA APPLICATION ON THE EXPRESSION OF ANTIOXIDANT GENES IN PERSIAN LIME. Tropical and Subtropical Agroecosystems, 24(3).
- Staton, M., Cannon, E., Sanderson, L. A., Wegrzyn, J., Anderson, T., Buehler, S., ... & Ficklin, S. (2021). Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings in bioinformatics, 22(6), bbab238.
- Zhang, M., Zhu, Y., Yang, H., Li, X., Xu, R., Zhu, F., & Cheng, Y. (2021). CsNIP5; 1 acts as a multifunctional regulator to confer water loss tolerance in citrus fruit. Plant Science, 111150.
- Rahim, M. A., Afrin, K. S., Jung, H. J., Kim, H. T., Park, J. I., & Nou, I. S. (2021). Identification and characterization of carotenoid biosynthesis related genes in a novel dark skinned citrus mutant cultivar ‘Suneat’. Horticulture, Environment, and Biotechnology, 62(1), 99-111.
- Teper, D., & Wang, N. (2021). Consequences of adaptation of TAL effectors on host susceptibility to Xanthomonas. PLoS genetics, 17(1), e1009310.
- Huang, C. Y., Araujo, K., Sánchez, J. N., Kund, G., Trumble, J., Roper, C., ... & Jin, H. (2021). A stable antimicrobial peptide with dual functions of treating and preventing citrus Huanglongbing. Proceedings of the National Academy of Sciences, 118(6).
- Duan, J., Li, X., Zhang, J., Cheng, B., Liu, S., Li, H., ... & Chen, W. (2021). Cocktail Therapy of Fosthiazate and Cupric-Ammoniun Complex for Citrus Huanglongbing. Frontiers in Plant Science, 12, 479.
- Peng, A., Zou, X., He, Y., Chen, S., Liu, X., Zhang, J., ... & Zhao, X. (2021). Overexpressing a NPR1-like gene from Citrus paradisi enhanced Huanglongbing resistance in C. sinensis. Plant Cell Reports, 40(3), 529-541.
- Pan, R., Chen, Y., Deng, X., & Xu, M. (2021). Digital Gene Expression Analysis of Huanglongbing Affected Mandarins (Citrus reticulata Blanco) In Response to Thermotherapy. Horticultural Plant Journal, 7(1), 1-12.
- Jung, S., Lee, T., Gasic, K., Campbell, B. T., Yu, J., Humann, J., ... & Main, D. (2021). The Breeding Information Management System (BIMS): an online resource for crop breeding. Database, 2021.
- Ramanauskas, K., & Igić, B. (2021). RNase-based self-incompatibility in cacti. New Phytologist, 231(5), 2039-2049.
- Li, Q., Canton, M., Wu, H., Zhang, X., Zale, J., & Mou, Z. (2021). Efficient artificial microRNA vectors for gene silencing in citrus. Plant Cell Reports, 1-4.
- Zhao, C., Liu, X., Gong, Q., Cao, J., Shen, W., Yin, X., ... & Sun, C. (2021). Three AP2/ERF family members modulate flavonoid synthesis by regulating type IV chalcone isomerase in citrus. Plant biotechnology journal, 19(4), 671.
- Liu, X. C., Lin, X. H., Liu, S. C., Zhu, C. Q., Grierson, D., Li, S. J., & Chen, K. S. (2021). The effect of NH4+ on phosphoenolpyruvate carboxykinase gene expression, metabolic flux and citrate content of citrus juice sacs. Plant Physiology and Biochemistry, 167, 123-131.
- Jung, S., Cheng, C. H., Buble, K., Lee, T., Humann, J., Yu, J., ... & Main, D. (2021). Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database, 2021.
- Ren, H., He, Y., Qi, X., Zheng, X., Zhang, S., Yu, Z., & Hu, F. (2021). The bayberry database: a multiomic database for Myrica rubra, an important fruit tree with medicinal value. BMC Plant Biology, 21(1), 1-11.
- Li, S. J., Liu, S. C., Lin, X. H., Grierson, D., Yin, X. R., & Chen, K. S. Citrus heat shock transcription factor CitHsfA7‐mediated citric acid degradation in response to heat stress. Plant, Cell & Environment.
- Wang, F., Wu, Y., Wu, W., Huang, Y., Zhu, C., Zhang, R., ... & Zeng, J. (2021). Integrative analysis of metabolome and transcriptome profiles provides insight into the fruit pericarp pigmentation disorder caused by ‘Candidatus Liberibacter asiaticus’ infection. BMC plant biology, 21(1), 1-16.
- Merritt, B. A., Zhang, X., Triplett, E. W., Mou, Z., & Orbović, V. (2021). Selection of transgenic citrus plants based on glyphosate tolerance conferred by a citrus 5-enolpyruvylshikimate-3-phosphate synthase variant. Plant Cell Reports, 40(10), 1947-1956.
- Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q. S., & Luo, C. (2021). Genome-wide identification of citrus calmodulin-like genes and their expression in response to arbuscular mycorrhizal fungi colonization and drought. Canadian Journal of Plant Science, (ja).
- Al-Subhi, A. M., Al-Sadi, A. M., Al-Yahyai, R. A., Chen, Y., Mathers, T., Orlovskis, Z., ... & Hogenhout, S. A. (2021). Witches’ broom disease of lime contributes to phytoplasma epidemics and attracts insect vectors. Plant Disease, PDIS-10.
- Shu, B., Xie, Y., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2021). Genome-wide identification of citrus histone acetyltransferase and deacetylase families and their expression in response to arbuscular mycorrhizal fungi and drought. Journal of Plant Interactions, 16(1), 367-376.
- Chin, E. L., Ramsey, J., Saha, S., Mishchuk, D., Chavez, J., Howe, K., ... & Slupsky, C. M. (2021). Multi-omics Comparison Reveals Landscape of Citrus limon and Citrus sinensis Response to ‘Candidatus Liberibacter asiaticus’. PhytoFrontiers™, 1(2), 76-84.
- Wenkai, H., Jingyan, W., Lexun, M., Feiyan, Z., Luping, J., Yu, Z., ... & Wei, G. (2021). Identification of key genes in the biosynthesis pathways related to terpenoids, alkaloids and flavonoids in fruits of Zanthoxylum armatum. Scientia Horticulturae, 290, 110523.
- Zhong, Y., Cheng, C., Moniruzzaman, M., Jiang, B., Jiang, N., & Zhong, G. (2021). Expression of miRNAs and their target genes in roots of ‘Sanhu’tangerine (Citrus reticulata blanco cv.‘Sanhu’) in response to Candidatus Liberibacter asiaticus infection. Journal of Plant Diseases and Protection, 128(2), 407-420.
- García S, A., & Casamayor, J. C. (2021). On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the Genome. BMC bioinformatics, 22(13), 1-26.
- Ribeiro, C., Xu, J., Teper, D., Lee, D., & Wang, N. (2021). The transcriptome landscapes of citrus leaf in different developmental stages. Plant Molecular Biology, 1-18.
- Pan, R., Chen, Y., Deng, X., & Xu, M. (2021). Digital Gene Expression Analysis of Huanglongbing Affected Mandarins (Citrus reticulata Blanco) In Response to Thermotherapy. Horticultural Plant Journal, 7(1), 1-12.
- Gong, J., Zeng, Y., Meng, Q., Guan, Y., Li, C., Yang, H., ... & Wang, P. (2021). Red light-induced kumquat fruit coloration is attributable to increased carotenoid metabolism regulated by FcrNAC22. Journal of Experimental Botany, 72(18), 6274-6290.
- Abutineh, M., Pizzo, N., Nifakos, N., Jin, X. L., Harlin, J. M., & Zhang, X. H. (2021). Genomic Analysis for Citrus Disease Detection. OBM Genetics, 5(1), 1-1.
2020
- Zhang, C., Chaiprasongsuk, M., Chanderbali, A. S., Chen, X., Fu, J., Soltis, D. E., & Chen, F. (2020). Origin and evolution of a gibberellin‐deactivating enzyme GAMT. Plant direct, 4(12), e00287.
- Arlotta, C., Ciacciulli, A., Strano, M. C., Cafaro, V., Salonia, F., Caruso, P., ... & Caruso, M. (2020). Disease Resistant Citrus Breeding Using Newly Developed High Resolution Melting and CAPS Protocols for Alternaria Brown Spot Marker Assisted Selection. Agronomy, 10(9), 1368.
- Li, Q., Qi, J., Qin, X., Dou, W., Lei, T., Hu, A., ... & Xu, L. (2020). CitGVD: a comprehensive database of citrus genomic variations. Horticulture Research, 7(1), 1-8.
- Shu, B., Jue, D., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Luo, C. (2020). Genome-wide identification and expression analysis of the citrus calcium-dependent protein kinase (CDPK) genes in response to arbuscular mycorrhizal fungi colonization and drought. Biotechnology & Biotechnological Equipment, 34(1), 1304-1314.
- Dasgupta, K., Hotton, S., Belknap, W., Syed, Y., Dardick, C., Thilmony, R., & Thomson, J. G. (2020). Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnology. BMC biotechnology, 20(1), 1-15.
- Luo, C., Sun, Q., Zhang, F., Zhang, D., Liu, C., Wu, Q., & Shu, B. (2020). Genome-wide identification and expression analysis of the Citrus malectin domain-containing receptor-like kinases in response to arbuscular mycorrhizal fungi colonization and drought. Horticulture, Environment, and Biotechnology, 61(5), 891-901.
- SHU, B., CAI, D., ZHANG, F., ZHANG, D., LIU, C., WU, Q., & LUO, C. (2020). Identifying citrus CBL and CIPK gene families and their expressions in response to drought and arbuscular mycorrhizal fungi colonization. Biologia plantarum, 64, 773-783.
- Rathod, A. R., Shah, K. D., Kotak, J. N., Ghelani, M. K., & Talaviya, J. R. (2020). Population dynamics of leaf miner, Phyllocnistis citrella (Stainton) infesting sweet orange. Journal of Entomology and Zoology Studies, 8(3), 1519-1521.
- Yin, C., Zhu, H., Jiang, Y., Shan, Y., & Gong, L. (2020). Silencing dicer-like genes reduces virulence and sRNA generation in Penicillium italicum, the cause of citrus blue mold. Cells, 9(2), 363.
- Gómez, L. M., Teixeira-Silva, N. S., Caserta, R., Takita, M. A., Marques, M. O., & de Souza, A. A. (2020). Overexpression of Citrus reticulata SAMT in Nicotiana tabacum increases MeSA volatilization and decreases Xylella fastidiosa symptoms. Planta, 252(6), 1-14.
- Zhang, F., Rossignol, P., Huang, T., Wang, Y., May, A., Dupont, C., ... & Irish, V. F. (2020). Reprogramming of stem cell activity to convert thorns into branches. Current Biology, 30(15), 2951-2961.
- Asins, M. J., Raga, M. V., Roca, D., & Carbonell, E. A. (2020). QTL and candidate gene analyses of rootstock-mediated mandarin fruit yield and quality traits under contrasting iron availabilities. Tree Genetics & Genomes, 16(6), 1-15.
- Huang, X., Wang, Y., Xu, J., & Wang, N. (2020). Development of multiplex genome editing toolkits for citrus with high efficacy in biallelic and homozygous mutations. Plant molecular biology, 104(3), 297-307.
- Bhatta, B. P., & Malla, S. (2020). Improving Horticultural Crops via CRISPR/Cas9: Current Successes and Prospects. Plants, 9(10), 1360.
- Duhan, N., Meshram, M., Loaiza, C. D., & Kaundal, R. (2020). citSATdb: Genome-Wide Simple Sequence Repeat (SSR) Marker Database of Citrus Species for Germplasm Characterization and Crop Improvement. Genes, 11(12), 1486.
- Liu, X., Zhao, C., Gong, Q., Wang, Y., Cao, J., Li, X., ... & Sun, C. (2020). Characterization of a caffeoyl-CoA O-methyltransferase-like enzyme involved in biosynthesis of polymethoxylated flavones in Citrus reticulata. Journal of experimental botany, 71(10), 3066-3079.
- Liu, X., Wang, Y., Chen, Y., Xu, S., Gong, Q., Zhao, C., ... & Sun, C. (2020). Characterization of a flavonoid 3’/5’/7-O-methyltransferase from Citrus reticulata and evaluation of the in vitro cytotoxicity of its methylated products. Molecules, 25(4), 858.
- Meng, H., Feng, J., Bai, T., Jian, Z., Chen, Y., & Wu, G. (2020). Genome-wide analysis of short interspersed nuclear elements provides insight into gene and genome evolution in citrus. DNA Research, 27(1), dsaa004.
- Julião, M. H., Silva, S. R., Ferro, J. A., & Varani, A. M. (2020). A Genomic and Transcriptomic Overview of MATE, ABC, and MFS Transporters in Citrus sinensis Interaction with Xanthomonas citri subsp. citri. Plants, 9(6), 794.
2019
- Ferreira, M. D. G., Castro, J. A., Silva, R. J. S., & Micheli, F. (2019). HVA22 from citrus: A small gene family whose some members are involved in plant response to abiotic stress. Plant Physiology and Biochemistry, 142, 395-404.
- Li, S. J., Xie, X. L., Liu, S. C., Chen, K. S., & Yin, X. R. (2019). Auto-and mutual-regulation between two CitERFs contribute to ethylene-induced citrus fruit degreening. Food chemistry, 299, 125163.
- Chagné, D., Vanderzande, S., Kirk, C., Profitt, N., Weskett, R., Gardiner, S. E., ... & Bassil, N. V. (2019). Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus× domestica Borkh.) using the OpenArray® platform. Horticulture research, 6(1), 1-16.
- Ouyang, Z. G., Mi, L. F., Duan, H. H., Hu, W., Chen, J. M., Peng, T., & Zhong, B. L. (2019). Differential expressions of citrus CAMTAs during fruit development and responses to abiotic stresses. BIOLOGIA PLANTARUM, 63(1), 354-364.
- Spoor, S., Cheng, C. H., Sanderson, L. A., Condon, B., Almsaeed, A., Chen, M., ... & Bett, K. (2019). Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. Database, 2019.
- Zheng, Y., Wu, S., Bai, Y., Sun, H., Jiao, C., Guo, S., ... & Xu, Y. (2019). Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. Nucleic acids research, 47(D1), D1128-D1136.
- Hodgson, H., De La Peña, R., Stephenson, M. J., Thimmappa, R., Vincent, J. L., Sattely, E. S., & Osbourn, A. (2019). Identification of key enzymes responsible for protolimonoid biosynthesis in plants: Opening the door to azadirachtin production. Proceedings of the National Academy of Sciences, 116(34), 17096-17104.
- Deng, H., Cai, Z., Xiang, S., Guo, Q., Huang, W., & Liang, G. (2019). Karyotype analysis of diploid and spontaneously occurring tetraploid blood orange (Citrus sinensis (L.) Osbeck) using multicolor FISH with repetitive DNA sequences as probes. Frontiers in Plant Science, 10, 331.
- Miao, L., Chen, C., Yao, L., Tran, J., & Zhang, H. (2019). Genome-wide identification, characterization, interaction network and expression profile of GAPDH gene family in sweet orange (Citrus sinensis). PeerJ, 7, e7934.
- Deng, H., Xiang, S., Guo, Q., Jin, W., Cai, Z., & Liang, G. (2019). Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications. BMC plant biology, 19(1), 77.
- Liu, Y., ul Qamar, M. T., Feng, J. W., Ding, Y., Wang, S., Wu, G., ... & Chen, L. L. (2019). Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species. BMC plant biology, 19(1), 140.
- Cao, M., Zhang, S., Li, M., Liu, Y., Dong, P., Li, S., ... & Zhou, Y. (2019). Discovery of Four Novel Viruses Associated with Flower Yellowing Disease of Green Sichuan Pepper (Zanthoxylum armatum) by Virome Analysis. Viruses, 11(8), 696.
2018
- Long, J. M., Liu, C. Y., Feng, M. Q., Liu, Y., Wu, X. M., & Guo, W. W. (2018). miR156-SPL modules regulate induction of somatic embryogenesis in citrus callus. Journal of experimental botany, 69(12), 2979-2993.
- Falk, T., Herndon, N., Grau, E., Buehler, S., Richter, P., Zaman, S., ... & Feltus, F. A. (2018). Growing and cultivating the forest genomics database, TreeGenes. Database, 2018.
- Guo, Z. H., Shu, W. S., Cheng, H. Y., Wang, G. M., Qi, K. J., Zhang, S. L., & Gu, C. (2018). Expression analysis of TCP genes in peach reveals an involvement of PpTCP. A2 in ethylene biosynthesis during fruit ripening. Plant Molecular Biology Reporter, 36(4), 588-595.
- Li, X., Si, W., Qin, Q., Wu, H., & Jiang, H. (2018). Deciphering evolutionary dynamics of SWEET genes in diverse plant lineages. Scientific reports, 8(1), 1-12.
2017
- Castro, J. A., Ferreira, M. D. G., Silva, R. J. S., Andrade, B. S., & Micheli, F. (2017). Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. PloS one, 12(5).
- Jung, S., Lee, T., Cheng, C. H., Ficklin, S., Yu, J., Humann, J., & Main, D. (2017). Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. Database, 2017.
- Chery, J. G., Sass, C., & Specht, C. D. (2017). Development of single‐copy nuclear intron markers for species‐level phylogenetics: Case study with Paullinieae (Sapindaceae) 1. Applications in plant sciences, 5(9), 1700051.
- Rawat, N., Kumar, B., Albrecht, U., Du, D., Huang, M., Yu, Q., ... & Deng, Z. (2017). Genome resequencing and transcriptome profiling reveal structural diversity and expression patterns of constitutive disease resistance genes in Huanglongbing-tolerant Poncirus trifoliata and its hybrids. Horticulture research, 4(1), 1-8.
- Barichello, D., Farinacio, R., dos Santos, C. C. N., Andrade, G. A., Nagashima, G. T., Garbúglio, D. D., ... & Carlos, E. F. (2017). Drought-tolerant transgenic Swingle Citrumelo controls accumulation of proline modulating the expression of key genes of the proline metabolism. Citrus Research & Technology, 38(2), 1-12.
- Araújo Castro, J., Gomes Ferreira, M. D., Santana Silva, R. J., Andrade, B. S., & Micheli, F. (2017). Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. PLOS ONE, 12(5), e0176878.
- Roselli, S., Olry, A., Vautrin, S., Coriton, O., Ritchie, D., Galati, G., ... & Bourgaud, F. (2017). A bacterial artificial chromosome (BAC) genomic approach reveals partial clustering of the furanocoumarin pathway genes in parsnip. The Plant Journal, 89(6), 1119-1132.
- da Silva, E. G., Ito, T. M., & de Souza, S. G. H. (2017). 'In silico'genome-wide identification and phylogenetic analysis of the WRKY transcription factor family in sweet orange ('Citrus sinensis'). Australian Journal of Crop Science, 11(6), 716.
- Doud, M. M., Wang, Y., Hoffman, M. T., Latza, C. L., Luo, W., Armstrong, C. M., ... & Duan, Y. (2017). Solar thermotherapy reduces the titer of Candidatus Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB-affected citrus plants. Horticulture research, 4(1), 1-9.
- Yu, Q., Chen, C., Du, D., Huang, M., Yao, J., Yu, F., ... & Gmitter, F. G. (2017). Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’. Horticulture research, 4(1), 1-15.
2016
- Yin, X. R., Xie, X. L., Xia, X. J., Yu, J. Q., Ferguson, I. B., Giovannoni, J. J., & Chen, K. S. (2016). Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. The Plant Journal, 86(5), 403-412.
- Jung, S., Lee, T., Ficklin, S., Yu, J., Cheng, C. H., & Main, D. (2016). Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database, 2016.
- Wang, Y., Zhou, L., Yu, X., Stover, E., Luo, F., & Duan, Y. (2016). Transcriptome profiling of Huanglongbing (HLB) tolerant and susceptible citrus plants reveals the role of basal resistance in HLB tolerance. Frontiers in plant science, 7, 933.
- Nwugo, C. C., Doud, M. S., Duan, Y. P., & Lin, H. (2016). Proteomics analysis reveals novel host molecular mechanisms associated with thermotherapy of ‘Ca. Liberibacter asiaticus’-infected citrus plants. BMC plant biology, 16(1), 253.
- Shimizu, T., Kitajima, A., Nonaka, K., Yoshioka, T., Ohta, S., Goto, S., ... & Kaminuma, E. (2016). Hybrid origins of citrus varieties inferred from DNA marker analysis of nuclear and organelle genomes. PloS one, 11(11).
- Fujii, H., Ohta, S., Nonaka, K., Katayose, Y., Matsumoto, T., Endo, T., ... & Shimada, T. (2016). Parental diagnosis of satsuma mandarin (Citrus unshiu Marc.) revealed by nuclear and cytoplasmic markers. Breeding science, 16060.
- Reyes, C. A., De Francesco, A., Ocolotobiche, E. E., Costa, N., & García, M. L. (2016). Uncontrolled Citrus psorosis virus infection in Citrus sinensis transgenic plants expressing a viral 24K-derived hairpin that does not trigger RNA silencing. Physiological and Molecular Plant Pathology, 94, 149-155.
- Terol, J., Tadeo, F., Ventimilla, D., & Talon, M. (2016). An RNA‐Seq‐based reference transcriptome for Citrus. Plant biotechnology journal, 14(3), 938-950.
- Ramos-González, P. L., Chabi-Jesus, C., Guerra-Peraza, O., Breton, M. C., Arena, G. D., Nunes, M. A., ... & Freitas-Astúa, J. (2016). Phylogenetic and molecular variability studies reveal a new genetic clade of Citrus leprosis virus C. Viruses, 8(6), 153.
- Reyes, C. A., Ocolotobiche, E. E., Marmisollé, F. E., Robles Luna, G., Borniego, M. B., Bazzini, A. A., ... & García, M. L. (2016). Citrus psorosis virus 24 K protein interacts with citrus miRNA precursors, affects their processing and subsequent miRNA accumulation and target expression. Molecular plant pathology, 17(3), 317-329.
- Ayadi, M., Hanana, M., Kharrat, N., Merchaoui, H., Marzoug, R. B., Lauvergeat, V., ... & Mzid, R. (2016). The WRKY transcription factor family in Citrus: Valuable and useful candidate genes for citrus breeding. Applied biochemistry and biotechnology, 180(3), 516-543.
- Yu, Y., Chen, C., & Gmitter, F. G. (2016). QTL mapping of mandarin (Citrus reticulata) fruit characters using high-throughput SNP markers. Tree genetics & genomes, 12(4), 77.
- Raga, V., Intrigliolo, D. S., Bernet, G. P., Carbonell, E. A., & Asins, M. J. (2016). Genetic analysis of salt tolerance in a progeny derived from the citrus rootstocks Cleopatra mandarin and trifoliate orange. Tree genetics & genomes, 12(3), 34.
- Li, S. J., Yin, X. R., Xie, X. L., Allan, A. C., Ge, H., Shen, S. L., & Chen, K. S. (2016). The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Scientific reports, 6, 20151.
- Wu, J., Chen, L., Lin, D., Ma, Z., & Deng, X. (2016). Development and Application of a Multiplex Real-Time PCR Assay as an Indicator of Potential Allergenicity in Citrus Fruits. Journal of agricultural and food chemistry, 64(47), 9089-9098.
- Devaiah, S. P., Owens, D. K., Sibhatu, M. B., Sarkar, T. R., Strong, C. L., Mallampalli, V. K., ... & Wamucho, A. (2016). Identification, recombinant expression, and biochemical analysis of putative secondary product glucosyltransferases from Citrus paradisi. Journal of agricultural and food chemistry, 64(9), 1957-1969.
2015
- Li, S. J., Liu, X. J., Xie, X. L., Grierson, D., Yin, X. R., & Chen, K. S. (2015). CrMYB73, a PH-like gene, contributes to citric acid accumulation in citrus fruit. Scientia Horticulturae, 197, 212-217.
- Xu, M., Li, Y., Zheng, Z., Dai, Z., Tao, Y., & Deng, X. (2015). Transcriptional analyses of mandarins seriously infected by ‘Candidatus Liberibacter asiaticus’. PLoS One, 10(7).
- Lin, Q., Jiang, Q., Lin, J., Wang, D., Li, S., Liu, C., ... & Chen, K. (2015). Heat shock transcription factors expression during fruit development and under hot air stress in Ponkan (Citrus reticulata Blanco cv. Ponkan) fruit. Gene, 559(2), 129-136.
- Lin, Q., Wang, C., Dong, W., Jiang, Q., Wang, D., Li, S., ... & Chen, K. (2015). Transcriptome and metabolome analyses of sugar and organic acid metabolism in Ponkan (Citrus reticulata) fruit during fruit maturation. Gene, 554(1), 64-74.
- Ito, T. M., Rampim, M. C., Vieira, C. E., Polido, P. B., Kaschuk, G., & de Souza, S. G. H. (2015). Modulation of the transcriptional activity of the AP2/ERF family (DREB genes) in orange (Citrus sinensis) leaves subjected to drought stress. African Journal of Biotechnology, 14(11), 901-909.
- Terol, J., Ibañez, V., Carbonell, J., Alonso, R., Estornell, L. H., Licciardello, C., ... & Talon, M. (2015). Involvement of a citrus meiotic recombination TTC-repeat motif in the formation of gross deletions generated by ionizing radiation and MULE activation. BMC genomics, 16(1), 69.
- Lin, Q., Li, S., Dong, W., Feng, C., Yin, X., Xu, C., ... & Chen, K. (2015). Involvement of CitCHX and CitDIC in developmental-related and postharvest-hot-air driven citrate degradation in citrus fruits. PloS one, 10(3).
- Asins, M. J., Raga, V., Bernet, G. P., & Carbonell, E. A. (2015). Genetic analysis of reproductive, vegetative and fruit quality traits to improve Citrus varieties. Tree genetics & genomes, 11(6), 117.
- Wang, Y., Zhou, L., Li, D., Dai, L., Lawton-Rauh, A., Srimani, P. K., ... & Luo, F. (2015). Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genes. PloS one, 10(3).
- Roy, A., Stone, A. L., Shao, J., Otero-Colina, G., Wei, G., Choudhary, N., ... & Schneider, W. L. (2015). Identification and molecular characterization of nuclear Citrus leprosis virus, a member of the proposed Dichorhavirus genus infecting multiple Citrus species in Mexico. Phytopathology, 105(4), 564-575.
- da Costa Silva, S., Mendes, S., dos Santos Soares Filho, W., & Pedrosa-Harand, A. (2015). Chromosome homologies between Citrus and Poncirus—the comparative cytogenetic map of mandarin (Citrus reticulata). Tree genetics & genomes, 11(1), 811.
2014
- Chagné, D., Crowhurst, R. N., Pindo, M., Thrimawithana, A., Deng, C., Ireland, H., ... & Bianco, L. (2014). The draft genome sequence of European pear (Pyrus communis L.‘Bartlett’). PloS one, 9(4).
- Xie, X. L., Shen, S. L., Yin, X. R., Xu, Q., Grierson, D., Ferguson, I., & Chen, K. S. (2014). Isolation, classification and transcription profiles of the AP2/ERF transcription factor superfamily in citrus. Molecular biology reports, 41(7), 4261-4271.
- Azim, M. K., Khan, I. A., & Zhang, Y. (2014). Characterization of mango (Mangifera indica L.) transcriptome and chloroplast genome. Plant molecular biology, 85(1-2), 193-208.
- Caruso, M., Distefano, G., Paolo, D. P., La Malfa, S., Russo, G., Gentile, A., & Recupero, G. R. (2014). High resolution melting analysis for early identification of citrus hybrids: A reliable tool to overcome the limitations of morphological markers and assist rootstock breeding. Scientia horticulturae, 180, 199-206.
- Ito, T. M., Polido, P. B., Rampim, M. C., Kaschuk, G., & Souza, S. G. (2014). Genome-wide identification and phylogenetic analysis of the AP2/ERF gene superfamily in sweet orange (Citrus sinensis). Genet Mol Res, 13(3), 7839-7851.
- Pinheiro, T. T., Figueira, A., & Latado, R. R. (2014). Early-flowering sweet orange mutant ‘x11’as a model for functional genomic studies of Citrus. BMC research notes, 7(1), 511.
- Tecle, I. Y., Edwards, J. D., Menda, N., Egesi, C., Rabbi, I. Y., Kulakow, P., ... & Mueller, L. A. (2014). solGS: a web-based tool for genomic selection. BMC bioinformatics, 15(1), 398.
- Pereira, A. L., Carazzolle, M. F., Abe, V. Y., de Oliveira, M. L., Domingues, M. N., Silva, J. C., ... & Benedetti, C. E. (2014). Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response. BMC genomics, 15(1), 157.
- Licciardello, C., D’Agostino, N., Traini, A., Recupero, G. R., Frusciante, L., & Chiusano, M. L. (2014). Characterization of the glutathione S-transferase gene family through ESTs and expression analyses within common and pigmented cultivars of Citrus sinensis (L.) Osbeck. BMC plant biology, 14(1), 39.
2013
- An, C., Orbovic, V., & Mou, Z. (2013). An efficient intragenic vector for generating intragenic and cisgenic plants in citrus. American Journal of Plant Sciences, 4(11), 2131.
- Bernardi, J., Mazza, R., Caruso, P., Recupero, G. R., Marocco, A., & Licciardello, C. (2013). Use of an expressed sequence tag-based method for single nucleotide polymorphism identification and discrimination of Citrus species and cultivars. Molecular breeding, 31(3), 705-718.
- Peng, G., Xie, X. L., Jiang, Q., Song, S., & Xu, C. J. (2013). Chlorophyll a/b binding protein plays a key role in natural and ethylene-induced degreening of Ponkan (Citrus reticulata Blanco). Scientia Horticulturae, 160, 37-43.
- Mercati, F., Riccardi, P., Leebens-Mack, J., Abenavoli, M. R., Falavigna, A., & Sunseri, F. (2013). Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.). Plant science, 203, 115-123.
- Ma, G., Zhang, L., Matsuta, A., Matsutani, K., Yamawaki, K., Yahata, M., ... & Kato, M. (2013). Enzymatic formation of β-citraurin from β-cryptoxanthin and zeaxanthin by carotenoid cleavage dioxygenase4 in the flavedo of citrus fruit. Plant Physiology, 163(2), 682-695.
- Shangguan, L., Han, J., Kayesh, E., Sun, X., Zhang, C., Pervaiz, T., ... & Fang, J. (2013). Evaluation of genome sequencing quality in selected plant species using expressed sequence tags. PLoS One, 8(7).
- Iorio, R. A., Del Duca, S., Calamelli, E., Pula, C., Lodolini, M., Scamardella, F., ... & Ricci, G. (2013). Citrus allergy from pollen to clinical symptoms. PLoS One, 8(1).
- Peng, G., Wang, C., Song, S., Fu, X., Azam, M., Grierson, D., & Xu, C. (2013). The role of 1-deoxy-d-xylulose-5-phosphate synthase and phytoene synthase gene family in citrus carotenoid accumulation. Plant Physiology and Biochemistry, 71, 67-76.
- Roy, A., Shao, J., Hartung, J. S., Schneider, W., & Brlansky, R. H. (2013). A case study on discovery of novel citrus leprosis virus cytoplasmic type 2 utilizing small RNA libraries by next generation sequencing and bioinformatic analyses. J. Data Mining Genomics Proteomics, 4(129), 2153-0602.
- Fujii, H., Shimada, T., Nonaka, K., Kita, M., Kuniga, T., Endo, T., ... & Omura, M. (2013). High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree genetics & genomes, 9(1), 145-153.
- Sanderson, L. A., Ficklin, S. P., Cheng, C. H., Jung, S., Feltus, F. A., Bett, K. E., & Main, D. (2013). Tripal v1. 1: a standards-based toolkit for construction of online genetic and genomic databases. Database, 2013.
- Serra, I. A., Bernardo, L., Spadafora, A., Faccioli, P., Canton, C., & Mazzuca, S. (2013). The Citrus clementina putative allergens: from proteomic analysis to structural features. Journal of agricultural and food chemistry, 61(37), 8949-8958.
- Nwugo, C. C., Duan, Y., & Lin, H. (2013). Study on citrus response to huanglongbing highlights a down-regulation of defense-related proteins in lemon plants upon ‘Ca. Liberibacter asiaticus’ infection. PloS one, 8(6).
- de Carvalho, K., de Campos, M. K. F., Domingues, D. S., Pereira, L. F. P., & Vieira, L. G. E. (2013). The accumulation of endogenous proline induces changes in gene expression of several antioxidant enzymes in leaves of transgenic Swingle citrumelo. Molecular Biology Reports, 40(4), 3269-3279.
- Nwugo, C. C., Lin, H., Duan, Y., & Civerolo, E. L. (2013). The effect of ‘Candidatus Liberibacter asiaticus’ infection on the proteomic profiles and nutritional status of pre-symptomatic and symptomatic grapefruit (Citrus paradisi) plants. BMC plant biology, 13(1), 59.
2012
- Gmitter, F. G., Chen, C., Machado, M. A., De Souza, A. A., Ollitrault, P., Froehlicher, Y., & Shimizu, T. (2012). Citrus genomics. Tree Genetics & Genomes, 8(3), 611-626.
- Cheng, J., Khan, M. A., Qiu, W. M., Li, J., Zhou, H., Zhang, Q., ... & Li, S. (2012). Diversification of genes encoding granule-bound starch synthase in monocots and dicots is marked by multiple genome-wide duplication events. PLoS One, 7(1).
- Li, Z. T., Gmitter, F. G., Grosser, J. W., Chen, C., & Gray, D. J. (2012). Isolation and characterization of a novel anthocyanin-promoting MYBA gene family in Citrus. Tree genetics & genomes, 8(4), 675-685.
- Voo, S. S., Grimes, H. D., & Lange, B. M. (2012). Assessing the biosynthetic capabilities of secretory glands in Citrus peel. Plant physiology, 159(1), 81-94.
- Zhang, L., Ma, G., Shirai, Y., Kato, M., Yamawaki, K., Ikoma, Y., & Matsumoto, H. (2012). Expression and functional analysis of two lycopene β-cyclases from citrus fruits. Planta, 236(4), 1315-1325.
- Romero, P., Lafuente, M. T., & Rodrigo, M. J. (2012). The Citrus ABA signalosome: identification and transcriptional regulation during sweet orange fruit ripening and leaf dehydration. Journal of Experimental Botany, 63(13), 4931-4945.
2011
- Hyun, T. K., & Kim, J. S. (2011). Genomic identification of putative allergen genes in woodland strawberry (Fragaria vesca) and mandarin orange (Citrus clementina). Plant Omics J, 4(7), 428-34.
- Belknap, W. R., Wang, Y., Huo, N., Wu, J., Rockhold, D. R., Gu, Y. Q., & Stover, E. (2011). Characterizing the citrus cultivar Carrizo genome through 454 shotgun sequencing. Genome, 54(12), 1005-1015.
- Ficklin, S. P., Sanderson, L. A., Cheng, C. H., Staton, M. E., Lee, T., Cho, I. H., ... & Main, D. (2011). Tripal: a construction toolkit for online genome databases. Database, 2011.
- Jung, S., Menda, N., Redmond, S., Buels, R. M., Friesen, M., Bendana, Y., ... & Bett, K. E. (2011). The chado natural diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database, 2011.