Work completed

  • Best-hit protein homology results from TrEMBL available to download for C. sinensis v2.0, C. medica, C. maxima, and A. buxifolia genomes (July 2018)
  • Best-hit protein homology results from SwissProt available to download for C. sinensis v2.0, C. medica, C. maxima, and A. buxifolia genomes (June 2018)
  • About 913 more Citrus sp. NCBI genes were imported into the database (June 2018)
  • As of June 22,2018—GCD contains: 70 genetic maps, 48,145 markers, 579 QTLs
  • Breeding Information Management System (BIMS) added to CGD, USDA-GRIN phenotype data added to BIMS for public access (June 2018)
  • InterProScan analysis of all Citrus genomes loaded into Chado, BLAST analysis with SwissProt database also loaded into Chado (June 2018)
  • Genome assemblies of Citrus maxima (C. grandis), Citrus ichangensis (C. cavaleriei), Citrus medica, and Atalantia buxifolia were added to CGD database, JBrowse and BLAST (April 2018)
  • Since April 2017, 13 more maps, 12108 markers, and 138 QTLs have been added (December 2017)
  • CGD User's Manual added (September 2017)
  • Valencia orange genome added to CGD (July 2017)
  • Updated and added NCBI SRA Datasets (May 2017)
  • Added 50 maps to CMap (May 2017)
  • Added 50 maps, 30,130 markers, and 341 QTLs to the database (April 2017)
  • Added SRA data from 30 citrus genomes aligned to the C. clementina v1.0 genome (March 2017)
  • Added Liberibacter genomes to database, BLAST, and JBrowse (March 2017)
  • Updated website to new interface style (March 2017)
  • Implemented new Tripal BLAST module with linkouts to JBrowse and the database (March 2017)
  • Moved all Citrus genomes from GBrowse to JBrowse (March 2017)
  • Added C. sinensis v1.1 to database, BLAST, and JBrowse (March 2017)
  • Updated NCBI genes (1/4/17)