Work completed

  • Bacteria genome synteny analysis added to Synteny Viewer (October 2018)
  • Citrus reticulata v1.0 (HZAU) loaded into chado, JBrowse, BLAST.  Homology analyses with sprot and TrEMBL also done and excel file available for download.  InterProScan and blastx results also loaded into chado. (September 2018)
  • CLas JXGC genome loaded into chado, JBrowse, and BLAST (September 2018)
  • MapViewer updated to Tripal 3 version.  Now can export figures of maps, correspondence matrices, and dot plots. (August 2018)
  • CGD converted to Tripal v3 and Elastic Search and Cross-Site search enabled (August 2018)
  • Best-hit protein homology results from TrEMBL available to download for C. sinensis v2.0, C. medica, C. maxima, and A. buxifolia genomes (July 2018)
  • Genome synteny analysis for Citrus genomes and New Synteny Viewer module added (June 2018)
  • Best-hit protein homology results from SwissProt available to download for C. sinensis v2.0, C. medica, C. maxima, and A. buxifolia genomes (June 2018)
  • About 913 more Citrus sp. NCBI genes were imported into the database (June 2018)
  • As of June 22,2018—GCD contains: 70 genetic maps, 48,145 markers, 579 QTLs
  • MapViewer updated with dynamic drawing element positioning for QTLs and Correspondences (June 2018)
  • Breeding Information Management System (BIMS) added to CGD, USDA-GRIN phenotype data added to BIMS for public access (June 2018)
  • InterProScan analysis of all Citrus genomes loaded into Chado, BLAST analysis with SwissProt database also loaded into Chado (June 2018)
  • Genome assemblies of Citrus maxima (C. grandis), Citrus ichangensis (C. cavaleriei), Citrus medica, and Atalantia buxifolia were added to CGD database, JBrowse and BLAST (April 2018)
  • Since April 2017, 13 more maps, 12108 markers, and 138 QTLs have been added (December 2017)
  • CGD User's Manual added (September 2017)
  • Valencia orange genome added to CGD (July 2017)
  • Updated and added NCBI SRA Datasets (May 2017)
  • Added 50 maps to CMap (May 2017)
  • Added 50 maps, 30,130 markers, and 341 QTLs to the database (April 2017)
  • Added SRA data from 30 citrus genomes aligned to the C. clementina v1.0 genome (March 2017)
  • Added Liberibacter genomes to database, BLAST, and JBrowse (March 2017)
  • Updated website to new interface style (March 2017)
  • MapViewer map visualization tool added (March 2017) 
  • Implemented new Tripal BLAST module with linkouts to JBrowse and the database (March 2017)
  • Moved all Citrus genomes from GBrowse to JBrowse (March 2017)
  • Added C. sinensis v1.1 to database, BLAST, and JBrowse (March 2017)
  • Updated NCBI genes (1/4/17)