ESTs and Transcripts |
|
NCBI ESTs |
Species specific ESTs from NCBI dbEST, downloaded 6/14/17 |
Unigene v1 |
Species specific assemblies of NCBI dbEST data performed by CGD |
CGD RefTrans v1 |
Species specific assemblies of filtered RNA-seq reads and unigenes performed by CGD |
Citrus aurantifolia transcriptome |
Transcripts from HLB-infected/non-infected leaves, Arce-Leal et al, 2020 |
Plant Genomes |
|
Citrus clementina cv. Clemenules v0.9 genome |
Previous version of JGI assembly |
Citrus clementina cv. Clemenules v1.0 genome |
Most current JGI assembly, Wu et al. 2014 |
Citrus sinensis cv. Ridge Pineapple v1.0 genome |
Previous version of JGI assembly |
Citrus sinensis cv. Ridge Pineapple v1.1 genome |
Most current JGI assembly, Wu et al. 2014 |
Citrus sinensis cv. Valencia v1.0 genome |
Chromosome level HZAU assembly, Xu et al. 2013 |
Citrus sinensis cv. Valencia v2.0 genome |
Chromosome level HZAU assembly, Wang et al. 2021 |
Citrus sinensis DHSO v3.0 genome |
Chromosome level HZAU assembly, Wang et al. 2021 |
Citrus sinensis cv. Valencia DVS_A v1.0 genome |
Chromosome level, phased assembly, Wu et al. 2023 |
Citrus sinensis cv. Valencia DVS_B v1.0 genome |
Chromosome level, phased assembly, Wu et al. 2023 |
Citrus sinensis cv. Newhall v1.0 genome |
Chromosome level, phased assembly, Gao et al. 2023 |
Citrus maxima Wanbaiyou v1.0 genome |
Chromosome level HZAU assembly, Wang et al. 2017 |
Citrus maxima Cupi Majiayouv1.0 genome |
Chromosome level HZAU assembly, Lu et al. 2022 |
Citrus ichangensis (C. cavaleriei) v1.0 genome |
Draft level HZAU assembly, Wang et al. 2017 |
Citrus medica v1.0 genome |
Draft level HZAU assembly, Wang et al. 2017 |
Atalantia buxifolia v1.0 genome |
Draft level HZAU assembly, Wang et al. 2017 |
Citrus reticulata v1.0 genome |
Draft level HZAU assembly, Wang et al. 2018 |
Poncirus trifoliata v1.3.1 genome |
JGI assembly, Peng et al. 2020 |
Fortunella hindsii v1.0 genome |
Draft level HZAU assembly, Zhu et al. 2019 |
Fortunella hindsii v2.0 genome |
Chromosome level HZAU assembly, Wang et al. 2022 |
Citrus limon v1.0 genome |
Primary and Alternative assemblies, Di Guardo et al, 2021 |
Citrus limon cv. Eureka v1.0 genome |
Haplotype assembly, Bao et al, 2023 |
Bacteria Genomes |
|
Ca. Liberibacter asiaticus genomes |
Complete genomes downloaded from NCBI |
Ca. Liberibacter africanus genomes |
Complete genomes downloaded from NCBI |
Ca. Liberibacter americanus genomes |
Complete genomes downloaded from NCBI |
Ca. Liberibacter solanacearum genomes |
Complete genomes downloaded from NCBI |
Liberibacter crescens genomes |
Complete genomes downloaded from NCBI |