BLAST


BLAST Search

Search for one or more of your sequences (using BLAST). First pick a query type (nucleotide or protein). You will be able to set search parameters on the next page. Choose the appropriate program based on the Query type and Target database type. Please click on the program name to view the search form.

Query Type Database Type BLAST Program
Nucleotide Nucleotide blastn: Search a nucleotide database using a nucleotide query.
Protein blastx: Search protein database using a translated nucleotide query.
Protein Nucleotide tblastn: Search translated nucleotide database using a protein query.
Protein blastp: Search protein database using a protein query.
BLAST Reference
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403–410.

Description and source of BLAST databases

Database Name Source
NCBI ESTs Species specific ESTs from NCBI dbEST, downloaded 6/14/17
Unigene v1 Species specific assemblies of NCBI dbEST data performed by CGD
CGD RefTrans v1 Species specific assemblies of filtered RNA-seq reads and unigenes performed by CGD
Citrus clementina cv. Clemenules v0.9 genome Previous version of JGI assembly
Citrus clementina cv. Clemenules v1.0 genome Most current JGI assembly, Wu et al. 2014
Citrus sinensis cv. Ridge Pineapple v1.0 genome Previous version of JGI assembly
Citrus sinensis cv. Ridge Pineapple v1.1 genome Most current JGI assembly, Wu et al. 2014
Citrus sinensis cv. Valencia v2.0 genome Most current HZAU assembly, Xu et al. 2013
Ca. Liberibacter asiaticus genomes Complete genomes downloaded from NCBI
Ca. Liberibacter africanus genomes Complete genomes downloaded from NCBI
Ca. Liberibacter americanus genomes Complete genomes downloaded from NCBI
Ca. Liberibacter solanacearum genomes Complete genomes downloaded from NCBI
Liberibacter crescens genomes Complete genomes downloaded from NCBI