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Citrus australis
Citrus clementina
Citrus ichangensis
Citrus limon
Citrus maxima
Citrus medica
Citrus reticulata
Citrus sinensis
Poncirus trifoliata
Atalantia buxifolia
Fortunella hindsii
Ca. Liberibacter asiaticus
Ca. Liberibacter africanus
Ca. Liberibacter americanus
others
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Protein to Nucleotide BLAST (tblastn)
Request a New BLAST
Enter
Protein
Query Sequence
Enter one or more queries in the top text box or use the browse button to upload a file from your local disk. The file may contain a single sequence or a list of sequences. In both cases, the data must be in
FASTA format
.
Show an Example Sequence
Enter FASTA sequence(s)
Or upload your own query FASTA:
Upload
The file should be a plain-text FASTA (.fasta, .fna, .fa, .fas) file. In other words, it cannot have formatting as is the case with MS Word (.doc, .docx) or Rich Text Format (.rtf). It cannot be greater than
500MB
in size.
Don't forget to press the Upload button before attempting to submit your BLAST.
Choose Search Target
Choose from one of the
nucleotide
BLAST databases listed below.
Nucleotide
BLAST Databases:
SELECT a Dataset
C. aurantifolia transcriptome
C. australis v1.0 genome, CDS
C. australis v1.0 genome, scaffolds
C. clementina v0.9 genome (JGI) CDS
C. clementina v0.9 genome (JGI) scaffolds
C. clementina v0.9 genome (JGI) transcripts
C. clementina v1.0 genome (JGI) CDS
C. clementina v1.0 genome (JGI) scaffolds
C. clementina v1.0 genome (JGI) transcripts
C. ichangensis XJC v1.0 genome CDS
C. ichangensis XJC v1.0 genome scaffolds
C. ichangensis XJC v1.0 genome transcripts
C. limon Eureka v1.0 genome
C. limon Eureka v1.0 genome transcripts
C. limon v1.0 genome, alternative scaffolds
C. limon v1.0 genome, alternative transcripts
C. limon v1.0 genome, primary scaffolds
C. limon v1.0 genome, primary transcripts
C. maxima Wanbaiyou v1.0 genome CDS
C. maxima Wanbaiyou v1.0 genome scaffolds
C. maxima Wanbaiyou v1.0 genome transcripts
Citrus maxima Cupi Majiayou v1.0 genome
Citrus maxima Cupi Majiayou v1.0 transcripts
C. medica XZ v1.0 genome CDS
C. medica XZ v1.0 genome scaffolds
C. medica XZ v1.0 genome transcripts
C. reticulata NCBI ESTs
C. reticulata WM01 v1.0 genome CDS
C. reticulata WM01 v1.0 genome scaffolds
C. reticulata WM01 v1.0 genome transcripts
C. sinensis DHSO v3.0 genome CDS
C. sinensis DHSO v3.0 genome scaffolds
C. sinensis DHSO v3.0 genome transcripts
C. sinensis Valencia DVS_A v1.0 genome scaffolds
C. sinensis Valencia DVS_A v1.0 genome transcripts
C. sinensis Valencia DVS_B v1.0 genome scaffolds
C. sinensis Valencia DVS_B v1.0 genome transcripts
C. sinensis Valencia v1.0 genome CDS
C. sinensis Valencia v1.0 genome scaffolds
C. sinensis Valencia v1.0 genome transcripts
C. sinensis Valencia v2.0 genome CDS
C. sinensis Valencia v2.0 genome scaffolds
C. sinensis Valencia v2.0 genome transcripts
C. sinensis v1.0 genome (JGI) CDS
C. sinensis v1.0 genome (JGI) scaffolds
C. sinensis v1.0 genome (JGI) transcripts
C. sinensis v1.1 genome (JGI) CDS
C. sinensis v1.1 genome (JGI) scaffolds
C. sinensis v1.1 genome (JGI) transcripts
Fortunella hindsii S3y-45 v1.0 genome CDS
Fortunella hindsii S3y-45 v1.0 genome scaffolds
Fortunella hindsii S3y-45 v1.0 genome transcripts
Fortunella hindsii S3y-45 v2.0 genome
Fortunella hindsii S3y-45 v2.0 transcripts
Poncirus trifoliata DPI 50-7 v1.3.1 genome CDS
Poncirus trifoliata DPI 50-7 v1.3.1 genome scaffolds
Poncirus trifoliata DPI 50-7v v1.3.1 genome transcripts
Poncirus trifoliata ZK8 v1.0 genome CDS
Poncirus trifoliata ZK8 v1.0 genome scaffolds
Poncirus trifoliata ZK8 v1.0 genome transcripts
C. sinensis CGD RefTrans v1
C. clementina unigene v1.0 contigs
C. sinensis unigene v1.0 contigs
P. trifoliata unigene v1.0 contigs
C. clementina NCBI ESTs
C. sinensis NCBI ESTs
C. trifoliata NCBI ESTs
Ca. L. asiaticus A4 CDS
Ca. L. asiaticus A4 genome
Ca. L. asiaticus Ishi-1 CDS
Ca. L. asiaticus Ishi-1 genome
Ca. L. asiaticus JXGC CDS
Ca. L. asiaticus JXGC genome
Ca. L. asiaticus gxpsy CDS
Ca. L. asiaticus gxpsy genome
Ca. L. asiaticus psy62 CDS
Ca. L. asiaticus psy62 genome
Ca. L. asiaticus-all strains CDS
Ca. L. africanus PTSAPSY CDS
Ca. L. africanus PTSAPSY genome
Ca. L. americanus Sao Paulo CDS
Ca. L. americanus Sao Paulo genome
Ca. L. solanacearum CLso-ZC1 CDS
Ca. L. solanacearum CLso-ZC1 genome
Liberibacter-all strains 16S rRNA
Liberibacter-all strains CDS
L. crescens BT-0 CDS
L. crescens BT-0 genome
L. crescens BT-1 CDS
L. crescens BT-1 genome
L. crescens-all strains CDS
Atalantia buxifolia v1.0 genome (HZAU) CDS
Atalantia buxifolia v1.0 genome (HZAU) scaffolds
Atalantia buxifolia v1.0 genome (HZAU) transcripts
Advanced Options
General parameters
Max target sequences:
10
50
100
250
500
1000
5000
10000
20000
e-Value (Expected Threshold)
Expected number of chance matches in a random model. This number should be give in a decimal format.
More Information
|
Expect value vedio tutorial
Word size:
3
6
Max matches in a query range
Scoring parameters
Matrix
PAM30
PAM70
PAM250
BLOSUM80
BLOSUM62
BLOSUM45
BLOSUM50
BLOSUM90
Gap Costs:
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 5 Extension: 2
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Existence: 8 Extension: 1
BLAST