Data Overview

 
 Genes : 366169 genes and 649803 mRNAs
 
 Genomes : 25 genome assemblies
 
 Germplasm : 2255 germplasm
 
 Aegle : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Aeglopsis : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Atalantia : 3
Germplasm TypeNumber of germplasm
wild_unimproved3
 
 Balsamocitrus : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Bergera : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citropsis : 4
Germplasm TypeNumber of germplasm
wild_unimproved4
 
 (Citrus : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus : 2074
Germplasm TypeNumber of germplasm
cultivar1306
wild_unimproved475
breeding_research_material180
population113
 
 Clausena : 3
Germplasm TypeNumber of germplasm
wild_unimproved2
cultivar1
 
 Eremocitrus : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Fortunella : 9
Germplasm TypeNumber of germplasm
wild_unimproved5
cultivar4
 
 Glycosmis : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Microcitrus : 16
Germplasm TypeNumber of germplasm
wild_unimproved14
cultivar2
 
 Murraya : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Naringi : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Oxanthera : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Poncirus : 68
Germplasm TypeNumber of germplasm
cultivar50
wild_unimproved7
population6
breeding_research_material5
 
 Severinia : 7
Germplasm TypeNumber of germplasm
wild_unimproved6
cultivar1
 
 X Citremocitrus : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 X Citrofortunella : 12
Germplasm TypeNumber of germplasm
cultivar10
wild_unimproved2
 
 X Citromicrocitrus : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 X Citroncirus : 40
Germplasm TypeNumber of germplasm
cultivar36
wild_unimproved3
breeding_research_material1
 
 X Fortucitrocirus : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 X Microcitronella : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Maps : 85 maps
 
 Citrus clementina : 3
Map TypeNumber of maps
genetic3
 
 Citrus grandis : 9
Map TypeNumber of maps
genetic6
physical3
 
 Citrus reshni : 3
Map TypeNumber of maps
genetic3
 
 Citrus reticulata : 5
Map TypeNumber of maps
genetic5
 
 Citrus sinensis : 2
Map TypeNumber of maps
genetic2
 
 Citrus spp. : 55
Map TypeNumber of maps
genetic55
 
 Citrus volkameriana : 1
Map TypeNumber of maps
genetic1
 
 Poncirus trifoliata : 7
Map TypeNumber of maps
genetic7
 
 Markers : 60407 markers
 
 Citrus aurantifolia : 15
Marker TypeNumber of markers
PCR marker14
genetic marker1
 
 Citrus aurantiifolia : 7
Marker TypeNumber of markers
PCR marker7
 
 Citrus aurantium : 47
Marker TypeNumber of markers
SSR17
EST13
genetic marker5
SRAP5
RAPD4
IRAP3
 
 Citrus clementina : 1968
Marker TypeNumber of markers
SNP1681
SSR154
gene marker47
Indel43
genetic marker27
PCR marker8
AFLP8
 
 Citrus grandis : 8004
Marker TypeNumber of markers
SSR6157
SNP1583
Indel264
 
 Citrus iyo : 15
Marker TypeNumber of markers
PCR marker15
 
 Citrus jambhiri : 4
Marker TypeNumber of markers
genetic marker3
PCR marker1
 
 Citrus japonica : 10
Marker TypeNumber of markers
genetic marker10
 
 Citrus junos : 10
Marker TypeNumber of markers
PCR marker10
 
 Citrus limon : 7
Marker TypeNumber of markers
genetic marker7
 
 Citrus limonia : 1
Marker TypeNumber of markers
gene marker1
 
 Citrus maxima : 5
Marker TypeNumber of markers
gene marker5
 
 Citrus medica : 34
Marker TypeNumber of markers
genetic marker28
EST6
 
 Citrus paradisi : 31
Marker TypeNumber of markers
PCR marker25
genetic marker4
gene marker2
 
 Citrus reshni : 17
Marker TypeNumber of markers
SSR17
 
 Citrus reticulata : 607
Marker TypeNumber of markers
SNP410
SSR111
PCR marker46
VNTR38
SCAR2
 
 Citrus sinensis : 2191
Marker TypeNumber of markers
SNP754
SSR717
PCR marker212
RNA primer210
gene marker128
genetic marker81
EST-SSR49
RAPD13
cDNA-AFLP13
STS10
Indel4
 
 Citrus spp. : 46607
Marker TypeNumber of markers
SNP31047
DArT7552
SLAF4005
SSR1279
CAPS584
RAPD531
SRAP274
genetic marker269
ISSR134
fAFLP119
EST110
PCR marker101
RFLP90
gene marker79
EST-SSR66
STS63
Indel62
SCAR50
IRAP46
EST-STMS39
AFLP34
VNTR16
RBC14
SCoT9
LAMP8
POPG6
PCR-RFLP6
RACE4
SSAP4
RGC3
STMS2
Isozyme1
 
 Citrus unshiu : 27
Marker TypeNumber of markers
gene marker12
PCR marker9
genetic marker5
SSR1
 
 Citrus volkameriana : 17
Marker TypeNumber of markers
genetic marker8
RAPD7
SSR2
 
 Poncirus trifoliata : 783
Marker TypeNumber of markers
SNP648
PCR marker80
genetic marker20
gene marker16
SSR6
EST5
RAPD4
SRAP3
IRAP1
 
 Phenotypes : 16971 phenotypic measurements , 75 trait descriptors
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Aegle marmelos77
Aeglopsis chevalieri77
Atalantia ceylanica816
Atalantia citroides88
Balsamocitrus dawei88
Bergera koenigii88
Citropsis articulata88
Citropsis daweana88
Citropsis gabunensis88
Citropsis gilletiana88
Citrus amblycarpa2929
Citrus asahikan2121
Citrus assamensis2133
Citrus benikoji2929
Citrus bergamia2150
Citrus canaliculata2121
Citrus cavaleriei1935
Citrus celebica2929
Citrus clementina2153
Citrus davaoensis2828
Citrus deliciosa2121
Citrus depressa2141
Citrus erythrosa2121
Citrus excelsa2970
Citrus funadoko2121
Citrus grandis24
Citrus halimii1616
Citrus hanaju2121
Citrus hassaku2929
Citrus hiroshimana2142
Citrus hybr.29658
Citrus hystrix2264
Citrus indica2121
Citrus intermedia2929
Citrus iyo88
Citrus keraji2133
Citrus kinokuni2142
Citrus latipes2941
Citrus leiocarpa2929
Citrus limetta2188
Citrus limettioides29120
Citrus longispina2929
Citrus lycopersiciformis2929
Citrus maderaspatana2121
Citrus maxima301493
Citrus medica30387
Citrus medica var. sarcodactylis1616
Citrus megaloxycarpa2020
Citrus miaray2121
Citrus montana2020
Citrus myrtifolia2163
Citrus natsudaidai2121
Citrus nippokoreana2121
Citrus nobilis2971
Citrus obovoidea2121
Citrus oleocarpa2121
Citrus otachibana2121
Citrus pennivesiculata2121
Citrus pyriformis2020
Citrus reshni2133
Citrus reticulata301741
Citrus rokugatsu2121
Citrus rugulosa2121
Citrus shunkokan2121
Citrus sinensis303639
Citrus sinograndis2020
Citrus spp.23241
Citrus succosa2121
Citrus sudachi2121
Citrus sulcata2121
Citrus sunki2929
Citrus tachibana2133
Citrus taiwanica2962
Citrus tamurana2133
Citrus tangerina2255
Citrus tardiva2121
Citrus temple2121
Citrus tengu2121
Citrus ujukitsu2121
Citrus unshiu21117
Citrus vitiensis2121
Citrus volkameriana28
Citrus webberi2950
Citrus westeri2121
Citrus wilsonii2121
Citrus x aurantiifolia29232
Citrus x aurantium29721
Citrus x jambhiri29230
Citrus x junos2121
Citrus x latifolia2198
Citrus x limon291196
Citrus x meyeri2121
Citrus x paradisi22830
Citrus x tangelo22595
Citrus yatsushiro2121
Citrus yuko2121
Clausena anisata77
Clausena excavata1515
Clausena harmandiana88
Eremocitrus glauca2727
Fortunella hindsii816
Fortunella hybr.2020
Fortunella japonica88
Fortunella margarita88
Fortunella x crassifolia824
Fortunella x obovata1919
Glycosmis pentaphylla88
Microcitrus australasica29117
Microcitrus australis1631
Microcitrus hybr.1616
Microcitrus inodora1616
Microcitrus spp.2020
Microcitrus warburgiana816
Murraya paniculata2754
Naringi crenulata88
Oxanthera neocaledonica2121
Poncirus trifoliata31896
Severinia buxifolia1949
Severinia disticha66
X Citremocitrus spp.88
X Citrofortunella microcarpa2175
X Citrofortunella spp.29110
X Citromicrocitrus spp.2121
X Citroncirus spp.30809
X Citroncirus webberi2121
X Fortucitrocirus spp.2036
X Microcitronella spp.1616
 
 Publications : 7025 publications
 
 QTL/MTL : 673 QTLs and 0 MTLs for 153 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
1,3-Pentadiene Content20
7-epi-alpha-Selinene Content30
9-cis-violaxanthin50
Acidity/soluble solid10
Acidity (total titratable acidity)50
Allo-ocimene isomer Content20
All-trans-violaxanthin60
Alpha-Selinene Content20
Alpha-Terpinene Content20
Aluminum concentration20
Anther Number10
Beta-phellandrene Content40
Boron concentration30
Calamenene Content40
Calcium concentration30
Change in water potential20
Chloride concentration20
Chroma index for color intensity10
Chromium concentration20
Citronellyl Acetate content50
Citrus Tristeza Virus Resistance70
cold tolerance80
Copper concentration20
Defoliation index40
Delta-Cadinene Content30
Diameter (fruit10
Diameter (fruit)30
Dried leaf weight60
Dried root weight20
Duration of juvenility period40
Ease of peeling10
Ethanol Content50
Ethyl Acetate Content20
Flavedo color space value a80
Flavedo color space value a/ b80
Flavedo color space value b80
Flavedo color space value L60
Fresh leaf weight50
Fruit Segment10
Fruit water rot10
Fruit weight110
Gamma-Terpinene Content20
Height (fruit)20
Height to Leaf Dry Weight Ratio120
Height to Root Dry Weight Ratio130
Height to Root Dry Weight to Leaf Chloride Ratio20
Height to Root Dry Weight to Root Sodium Ratio30
Height to Root Dry Weight to Whole Plant Chloride Ratio10
Height to Root Dry Weight to Whole Plant Sodium Ratio10
Height to Stem Dry Weight Ratio90
Height to Whole Plant Dry Weight Ratio80
Height to Whole Plant Dry Weight to Root Sodium Ratio20
Height/width ratio10
Heptanal Content20
HLB Canopy Damage50
HLB Foliar Symptoms130
HLB-induced callose synthase expression520
Hue angle for leaf color30
Iron Concentration40
Juice color space value a40
Juice color space value a/b50
Juice color space value b40
Juice color space value L10
Juice content20
Juice percentage10
Leaf area50
Leaf area increment20
Leaf Chloride content90
Leaf Chloride to Potassium Ratio30
Leaf color parameter b30
Leaf color parameter LCL30
Leaf Dry Weight40
Leaf Length10
Leaf Potassium content50
Leaf Sodium content140
Leaf Sodium to Potassium Ratio50
Leaf Width20
Lutein40
Magnesium concentration20
Manganese concetration10
Molybdenum concentration10
Neryl acetate Content30
Nickel concentration30
Number of fruits per box10
Number of seeds40
Octanal Content20
Peel puffing60
Petal Length10
Petal Number10
Petal Width10
Phosphorus concentration50
Phytoene20
Phytophthora Gummosis Resistance30
Plant height20
p-Menth-1-en-9-ol acetate Content20
Pollen fertility50
Pollen grains per anther60
Potassium concentration20
Premnaspirodiene Content30
RI1495 Content40
RI1549 Content20
Root Chloride content130
Root Chloride to Potassium Ratio30
Root Dry Weight80
Root Dry Weight to Whole Plant Chloride Ratio20
Root Potassium content10
Root Sodium content220
Root Sodium to Potassium Ratio70
Seed Embryony30
Segments per fruit10
Sodium concentration60
Soluble solids content/ titratable acidity30
Soluble solid (total soluble solids)60
Spirolepechinene Content40
Stem Chloride content50
Stem Chloride to Potassium Ratio10
Stem Dry Weight90
Stem Potassium content10
Stem Sodium content120
Stem Sodium to Potassium Ratio20
Strontium concentration40
Sulfur concentration30
Technological index50
Titanium concentration20
Total Carotenoid130
Total soluble solids10
Total Violaxanthin50
total ζ-carotene30
Tree Canopy Width20
Tree Growth10
Tree Height20
Tree Vigor10
Trunk Diameter20
Trunk Diameter Growth20
Valencene Content40
Vanadium concentration20
Water concentration90
Whole Plant Chloride content90
Whole Plant Chloride to Potassium Ratio20
Whole Plant Chloride to Sodium Ratio100
Whole Plant Dry Weight40
Whole Plant Net Growth130
Whole Plant Sodium content40
Whole Plant Sodium to Potassium Ratio40
Whole Plant Total Growth120
Whole Plant Weight to Root Sodium Ratio10
zeaxanthin20
Zinc concentration20
β-carotene20
β-cryptoxanthin30
ζ-carotene120
ζ-carotene230
ζ-carotene330
 
 Species : 145 species
GenusSpecies
Aeglemarmelos
Aeglopsischevalieri
Atalantiaceylanica, citroides
Balsamocitrusdawei
Bergerakoenigii
Citropsisarticulata, daweana, gabunensis, gilletiana
(Citrusunshiu x Citrus sinensis) x Citrus reticulata
Citrusamblycarpa, asahikan, assamensis, aurantifolia, aurantiifolia, aurantiifolia x Citrus japonica var. margarita, aurantium, benikoji, bergamia, canaliculata, cavaleriei, celebica, clementina, davaoensis, deliciosa, depressa, erythrosa, excelsa, funadoko, grandis, halimii, hanaju, hassaku, hiroshimana, hongheensis, hybr., hybrid, hystrix, ichangensis, indica, intermedia, iyo, jambhiri, japonica var. margarita, junos, keraji, kinokuni, latifolia, latipes, leiocarpa, limetta, limettioides, limon, limonia, limonimedica, longispina, lycopersicaformis, lycopersiciformis, macrophylla, macroptera, maderaspatana, madurensis, maxima, medica, medica var. sarcodactylis, megaloxycarpa, meyeri, miaray, micrantha, mitis, montana, myrtifolia, natsudaidai, nippokoreana, nobilis, obovoidea, oleocarpa, otachibana, oto, paradisi, pennivesiculata, platymamma, pyriformis, reshni, reticulata, reticulata x Citrus sinensis, rokugatsu, rugulosa, shunkokan, sinensis, sinograndis, spp., suavissima, succosa, sudachi, sulcata, sunki, tachibana, taiwanica, tamurana, tangerina, tankan, tardiva, temple, tengu, trifoliata, ujukitsu, unshiu, vitiensis, volkameriana, webberi, westeri, wilsonii, x aurantiifolia, x aurantium, x jambhiri, x junos, x latifolia, x limon, x meyeri, x paradisi, x tangelo, yatsushiro, yuko
Clausenaanisata, excavata, harmandiana
Eremocitrusglauca
Fortunellahindsii, hybr., japonica, margarita, x crassifolia, x obovata
Glycosmispentaphylla
Microcitrusaustralasica, australis, hybr., inodora, spp., warburgiana
Murrayapaniculata
Naringicrenulata
Oxantheraneocaledonica
Poncirustrifoliata
Severiniabuxifolia, disticha
X Citremocitrusspp.
X Citrofortunellamicrocarpa, spp.
X Citromicrocitrusspp.
X Citroncirusspp., webberi
X Fortucitrocirusspp.
X Microcitronellaspp.
 
 Transcripts
Analysis NameNumber of features
Citrus clementina Unigene version 1.0 (Ccv1)contig : 15,548
reads : 117,758
singlets :
Citrus sinensis CGD RefTrans V1Reference Transcriptomes : 33111
Citrus sinensis Unigene version 1.0 (Csv1)contig : 13,856
reads : 206,813
singlets :
Citrus trifoliata Unigene version 1.0 (Ctv1)reads : 61,874
singlets :
contig : 6,884