Data Overview

 
 Genes : 162199 mRNAs
SourceNumber of mRNAs
Ca. L. solanacearum CLso-ZC1 genome0
Ca. L. americanus Sao Paulo genome0
Ca. L. asiaticus gxpsy genome0
Citrus sinensis genome v1.0 (JGI)46147
Citrus clementina genome v1.0 (JGI)33929
Ca. L. asiaticus psy62 genome0
Citrus sinensis genome v1.1 (JGI)46147
L. crescens BT-0 genome0
Citrus clementina genome v0.9 (JGI)35976
Ca. L. africanus PTSAPSY genome0
Ca. L. asiaticus A4 genome0
L. crescens BT-1 genome0
Ca. L. asiaticus Ishi-1 genome0
 
 Genomes
 
 Germplasm : 754 germplasm
 
 Atalantia monophylla : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citroncirus x paradisi x trifoliata : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus aurantifolia : 2
Germplasm TypeNumber of germplasm
breeding_research_material1
cultivar1
 
 Citrus aurantiifolia : 23
Germplasm TypeNumber of germplasm
wild_unimproved17
cultivar6
 
 Citrus aurantium : 27
Germplasm TypeNumber of germplasm
wild_unimproved20
cultivar7
 
 Citrus clementina : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus deliciosa : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus grandis : 20
Germplasm TypeNumber of germplasm
cultivar18
breeding_research_material2
 
 Citrus hassaku : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus hybrid : 4
Germplasm TypeNumber of germplasm
wild_unimproved3
cultivar1
 
 Citrus hystrix : 3
Germplasm TypeNumber of germplasm
cultivar2
wild_unimproved1
 
 Citrus ichangensis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus indica : 3
Germplasm TypeNumber of germplasm
breeding_research_material1
cultivar1
wild_unimproved1
 
 Citrus iyo : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 Citrus jambhiri : 2
Germplasm TypeNumber of germplasm
wild_unimproved1
cultivar1
 
 Citrus latipes : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus limettioides : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus limon : 42
Germplasm TypeNumber of germplasm
wild_unimproved23
cultivar18
breeding_research_material1
 
 Citrus limonia : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus macrophylla : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus madurensis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus maxima : 54
Germplasm TypeNumber of germplasm
wild_unimproved35
cultivar18
breeding_research_material1
 
 Citrus medica : 41
Germplasm TypeNumber of germplasm
breeding_research_material19
wild_unimproved13
cultivar9
 
 Citrus micrantha : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus paradisi : 16
Germplasm TypeNumber of germplasm
cultivar12
breeding_research_material2
wild_unimproved2
 
 Citrus reshni : 3
Germplasm TypeNumber of germplasm
cultivar2
breeding_research_material1
 
 Citrus reticulata : 121
Germplasm TypeNumber of germplasm
cultivar65
wild_unimproved50
population3
breeding_research_material3
 
 Citrus sinensis : 90
Germplasm TypeNumber of germplasm
cultivar76
breeding_research_material11
wild_unimproved3
 
 Citrus spp. : 171
Germplasm TypeNumber of germplasm
breeding_research_material103
population34
cultivar25
wild_unimproved9
 
 Citrus sunki : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus taiwanica : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus tamurana : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus temple : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus trifoliata : 15
Germplasm TypeNumber of germplasm
cultivar8
population6
breeding_research_material1
 
 Citrus unshiu : 6
Germplasm TypeNumber of germplasm
breeding_research_material4
cultivar2
 
 Citrus volkameriana : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus x clementina x tangelo : 1
Germplasm TypeNumber of germplasm
population1
 
 Citrus x paradisi : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus x reticulata x temple : 2
Germplasm TypeNumber of germplasm
breeding_research_material2
 
 Citrus x tangelo : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Eremocitrus glauca : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Fortunella crassifolia : 2
Germplasm TypeNumber of germplasm
wild_unimproved1
cultivar1
 
 Fortunella hindsii : 3
Germplasm TypeNumber of germplasm
cultivar1
wild_unimproved1
breeding_research_material1
 
 Fortunella japonica : 3
Germplasm TypeNumber of germplasm
cultivar2
wild_unimproved1
 
 Fortunella margarita : 3
Germplasm TypeNumber of germplasm
cultivar2
wild_unimproved1
 
 Fortunella obovata : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Fortunella polyandra : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Microcitrus australasica : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Microcitrus australis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Poncirus trifoliata : 17
Germplasm TypeNumber of germplasm
wild_unimproved7
cultivar6
population2
breeding_research_material2
 
 Severinia buxifolia : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 X Citroncirus spp. : 32
Germplasm TypeNumber of germplasm
population28
cultivar4
 
 X Citroncirus x limonia x trifoliata : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 X Citrus spp. : 9
Germplasm TypeNumber of germplasm
population7
breeding_research_material1
cultivar1
 
 X Citrus x paradisi : 1
Germplasm TypeNumber of germplasm
population1
 
 Maps : 56 maps
 
 Citrus aurantium : 2
Map TypeNumber of maps
genetic2
 
 Citrus; Citrus spp. : 1
Map TypeNumber of maps
genetic1
 
 Citrus clementina : 3
Map TypeNumber of maps
genetic3
 
 Citrus limonia : 2
Map TypeNumber of maps
genetic2
 
 Citrus maxima : 3
Map TypeNumber of maps
genetic3
 
 Citrus reshni : 1
Map TypeNumber of maps
genetic1
 
 Citrus sinensis : 5
Map TypeNumber of maps
genetic5
 
 Citrus spp. : 11
Map TypeNumber of maps
genetic9
Genetic2
 
 Citrus sunki : 1
Map TypeNumber of maps
genetic1
 
 Citrus trifoliata : 14
Map TypeNumber of maps
genetic14
 
 Poncirus trifoliata : 1
Map TypeNumber of maps
genetic1
 
 X Citroncirus spp. : 20
Map TypeNumber of maps
genetic20
 
 X Citrus trifoliata : 1
Map TypeNumber of maps
genetic1
 
 X Citrus x clementina x tangelo : 1
Map TypeNumber of maps
genetic1
 
 Markers : 30076 markers
 
 Brassica oleracea : 246
Marker TypeNumber of markers
SRAP246
 
 Buchloe dactyloides : 10
Marker TypeNumber of markers
STS10
 
 Citroncirus spp. : 10
Marker TypeNumber of markers
RFLP10
 
 Citroncirus x paradisi x trifoliata : 1
Marker TypeNumber of markers
SSR1
 
 Citrus aurantifolia : 7
Marker TypeNumber of markers
PCR Primer7
 
 Citrus aurantiifolia : 7
Marker TypeNumber of markers
PCR Primer7
 
 Citrus aurantium : 63
Marker TypeNumber of markers
SCAR22
SSR20
IRAP17
RAPD4
 
 Citrus clementina : 1978
Marker TypeNumber of markers
SNP1523
SSR320
RAPD53
Indel47
genetic marker27
PCR Primer8
 
 Citrus grandis : 118
Marker TypeNumber of markers
SSR118
 
 Citrus iyo : 15
Marker TypeNumber of markers
PCR Primer15
 
 Citrus jambhiri : 23
Marker TypeNumber of markers
RFLP19
genetic marker2
SSR1
PCR Primer1
 
 Citrus junos : 11
Marker TypeNumber of markers
PCR Primer10
SNP1
 
 Citrus limon : 1
Marker TypeNumber of markers
SNP1
 
 Citrus limonia : 21
Marker TypeNumber of markers
RAPD14
RFLP5
Isozyme2
 
 Citrus maxima : 116
Marker TypeNumber of markers
RAPD93
SSR11
SCAR6
CAPS3
SNP2
STS1
 
 Citrus maxima x trifoliata : 9
Marker TypeNumber of markers
RAPD9
 
 Citrus medica : 29
Marker TypeNumber of markers
Genetic marker27
SSR1
genetic marker1
 
 Citrus nobilis : 12
Marker TypeNumber of markers
RFLP12
 
 Citrus paradisi : 27
Marker TypeNumber of markers
PCR Primer25
gene marker2
 
 Citrus reshni : 32
Marker TypeNumber of markers
SSR32
 
 Citrus reticulata : 95
Marker TypeNumber of markers
SSR49
PCR Primer24
PCR Primers22
 
 Citrus reticulata x temple : 1
Marker TypeNumber of markers
SSR1
 
 Citrus sinensis : 443
Marker TypeNumber of markers
SSR241
PCR Primer120
gene marker29
genetic markers17
Gene marker12
PCR primer7
Gene markers5
Indel5
genetic marker4
SNP3
 
 Citrus spp. : 26210
Marker TypeNumber of markers
SNP25697
SSR113
PCR Primer73
RAPD71
Gene marker66
EST-STMS41
ISSR34
Genetic marker26
genetic marker24
SCAR13
Indel12
PCR9
PCR-RFLP6
RBC6
SSAP4
RACE Primer4
CAPS4
gene marker4
Isozyme2
STS1
 
 Citrus sunki : 62
Marker TypeNumber of markers
RAPD62
 
 Citrus trifoliata : 250
Marker TypeNumber of markers
RAPD182
SSR28
SCAR27
RGC3
RFLP3
CAPS2
ISSR2
IRAP2
Isozyme1
 
 Citrus unshiu : 10
Marker TypeNumber of markers
Indel3
gene marker3
SNP2
PCR Primer2
 
 Citrus x paradisi : 7
Marker TypeNumber of markers
SSR4
SNP3
 
 Citrus x reticulata x temple : 3
Marker TypeNumber of markers
SSR3
 
 Poncirus trifoliata : 42
Marker TypeNumber of markers
PCR Primer25
Genetic marker11
Gene Primer3
Gene marker2
PCR1
 
 Prunus persica : 11
Marker TypeNumber of markers
Isozyme11
 
 Rutaceae spp. : 14
Marker TypeNumber of markers
SSR14
 
 X Citroncirus sp. : 1
Marker TypeNumber of markers
STS1
 
 X Citroncirus spp. : 52
Marker TypeNumber of markers
SSR23
CAPS10
SCAR7
RFLP5
RAPD5
Isozyme2
 
 X Citroncirus x trifoliata x aurantium : 121
Marker TypeNumber of markers
SSR60
IRAP58
SCAR3
 
 X Citroncirus x trifoliata x reshni : 18
Marker TypeNumber of markers
SCAR18
 
 QTL/MTL : 74 QTLs and 5 MTLs for 7 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
Apomixis60
cold tolerance410
Juvenility120
resistance to Alternaria brown spot01
resistance to Citrus tristeza virus24
resistance to Phytophthora gummosis30
Seed Embryony100
 
 Species : 106 species
GenusSpecies
Atalantiamonophylla
Citroncirusx paradisi x trifoliata
Citrusacidoglobosa, amblycarpa, aurantifolia, aurantiifolia, aurantium, australasica, canaliculata, cavaleriei, celebica, clementina, clementina x Citrus reticulata, deliciosa, depressa, genshokan, grandis, halimii, hanaju, hassaku, hindsii, hongheensis, hybrid, hybrid cultivar, hystrix, ichangensis, indica, iyo, jambhiri, japonica, japonica var. margarita, junos, keraji, kinokuni, kizu, latifolia, latipes, leiocarpa, limettioides, limon, limonia, limonimedica, longispina, macrophylla, macroptera, madurensis, maxima, maxima x Citrus paradisi, maxima x Citrus trifoliata, medica, medica var. sarcodactylis, medica var. yunnanensis, micrantha, natsudaidai, nippokoreana, nobilis, oto, paradisi, platymamma, reshni, reticulata, reticulata x Citrus sinensis, reticulata x Citrus unshiu, sinensis, sinensis x Citrus reticulata, sinensis x Citrus trifoliata, southwickii, sphaerocarpa, spp., sp. 'speciosa', sp. 'tenuissima', suavissima, sudachi, suhuiensis, sunki, tachibana, taiwanica, takuma-sudachi, tamurana, tangerina, tankan, tarogayo, temple, trifoliata, unshiu, volkameriana, webberi, wilsonii, x clementina x tangelo, x microcarpa, x paradisi, x paradisi x Citrus sinensis, x paradisi x Citrus trifoliata, x reticulata x temple, x tangelo, yatsushiro, yuko
(Citrusunshiu x Citrus sinensis) x Citrus reticulata
Eremocitrusglauca
Fortunellacrassifolia, hindsii, japonica, margarita, obovata, polyandra
Microcitrusaustralasica, australis
Poncirustrifoliata
Severiniabuxifolia
X Citroncirusspp., x limonia x trifoliata
X Citrusspp., x paradisi
 
 Transcripts
Analysis NameNumber of features
Citrus clementina Unigene version 1.0 (Ccv1)reads : 117,758
contig : 15,548
singlets :
Citrus sinensis CGD RefTrans V1Reference Transcriptomes : 33111
Citrus sinensis Unigene version 1.0 (Csv1)reads : 206,813
contig : 13,856
singlets :
Citrus trifoliata Unigene version 1.0 (Ctv1)reads : 61,874
contig : 6,884
singlets :