Data Overview

 
 Genes : 213118 genes and 405468 mRNAs
 
 Genomes
 
 Germplasm : 1383 germplasm
 
 Citrus amblycarpa : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus aurantifolia : 10
Germplasm TypeNumber of germplasm
cultivar8
breeding_research_material2
 
 Citrus aurantiifolia : 25
Germplasm TypeNumber of germplasm
wild_unimproved18
cultivar7
 
 Citrus aurantium : 86
Germplasm TypeNumber of germplasm
cultivar64
wild_unimproved19
breeding_research_material3
 
 Citrus bergamia : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus celebica : 4
Germplasm TypeNumber of germplasm
cultivar4
 
 Citrus clementina : 12
Germplasm TypeNumber of germplasm
cultivar8
breeding_research_material3
population1
 
 Citrus deliciosa : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus depressa : 2
Germplasm TypeNumber of germplasm
cultivar1
wild_unimproved1
 
 Citrus grandis : 59
Germplasm TypeNumber of germplasm
cultivar53
population3
breeding_research_material3
 
 Citrus hassaku : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus hongheensis : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus hybrid : 4
Germplasm TypeNumber of germplasm
wild_unimproved3
cultivar1
 
 Citrus hystrix : 6
Germplasm TypeNumber of germplasm
cultivar5
wild_unimproved1
 
 Citrus ichangensis : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus indica : 4
Germplasm TypeNumber of germplasm
cultivar2
breeding_research_material1
wild_unimproved1
 
 Citrus iyo : 2
Germplasm TypeNumber of germplasm
cultivar1
breeding_research_material1
 
 Citrus jambhiri : 4
Germplasm TypeNumber of germplasm
cultivar3
breeding_research_material1
 
 Citrus junos : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus kinokuni : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus latifolia : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus latipes : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus limettioides : 5
Germplasm TypeNumber of germplasm
cultivar3
breeding_research_material2
 
 Citrus limon : 76
Germplasm TypeNumber of germplasm
cultivar52
wild_unimproved23
breeding_research_material1
 
 Citrus limonia : 18
Germplasm TypeNumber of germplasm
cultivar18
 
 Citrus limonimedica : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus lycopersicaformis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus macrophylla : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus macroptera : 2
Germplasm TypeNumber of germplasm
cultivar1
breeding_research_material1
 
 Citrus madurensis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus maxima : 72
Germplasm TypeNumber of germplasm
wild_unimproved46
cultivar24
breeding_research_material2
 
 Citrus medica : 55
Germplasm TypeNumber of germplasm
breeding_research_material20
wild_unimproved19
cultivar16
 
 Citrus meyeri : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus micrantha : 4
Germplasm TypeNumber of germplasm
cultivar4
 
 Citrus mitis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus natsudaidai : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus nobilis : 5
Germplasm TypeNumber of germplasm
cultivar4
wild_unimproved1
 
 Citrus oto : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citrus paradisi : 58
Germplasm TypeNumber of germplasm
cultivar54
wild_unimproved2
breeding_research_material2
 
 Citrus reshni : 3
Germplasm TypeNumber of germplasm
breeding_research_material2
cultivar1
 
 Citrus reticulata : 224
Germplasm TypeNumber of germplasm
cultivar158
wild_unimproved47
breeding_research_material16
population3
 
 Citrus sinensis : 220
Germplasm TypeNumber of germplasm
cultivar196
breeding_research_material20
wild_unimproved3
population1
 
 Citrus spp. : 317
Germplasm TypeNumber of germplasm
cultivar120
breeding_research_material96
population92
wild_unimproved9
 
 Citrus sudachi : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus sunki : 6
Germplasm TypeNumber of germplasm
cultivar5
wild_unimproved1
 
 Citrus tachibana : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus taiwanica : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus tamurana : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus tangerina : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus tankan : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citrus temple : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus trifoliata : 2
Germplasm TypeNumber of germplasm
breeding_research_material1
cultivar1
 
 Citrus unshiu : 17
Germplasm TypeNumber of germplasm
cultivar14
breeding_research_material3
 
 Citrus volkameriana : 4
Germplasm TypeNumber of germplasm
cultivar3
population1
 
 Citrus webberi : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Poncirus trifoliata : 30
Germplasm TypeNumber of germplasm
cultivar13
wild_unimproved7
population6
breeding_research_material4
 
 Maps : 70 maps
 
 Citrus clementina : 3
Map TypeNumber of maps
genetic3
 
 Citrus grandis : 9
Map TypeNumber of maps
genetic6
physical3
 
 Citrus reshni : 3
Map TypeNumber of maps
Genetic3
 
 Citrus reticulata : 5
Map TypeNumber of maps
physical3
genetic2
 
 Citrus sinensis : 2
Map TypeNumber of maps
genetic2
 
 Citrus spp. : 40
Map TypeNumber of maps
genetic34
Genetic6
 
 Citrus volkameriana : 1
Map TypeNumber of maps
genetic1
 
 Poncirus trifoliata : 7
Map TypeNumber of maps
genetic4
Genetic3
 
 Markers : 48154 markers
 
 Citrus aurantifolia : 15
Marker TypeNumber of markers
PCR Marker7
PCR Primer7
genetic markers1
 
 Citrus aurantiifolia : 7
Marker TypeNumber of markers
PCR Primer7
 
 Citrus aurantium : 47
Marker TypeNumber of markers
SSR17
EST13
SRAP5
genetic marker5
RAPD4
IRAP3
 
 Citrus clementina : 1728
Marker TypeNumber of markers
SNP1529
SSR100
Indel38
genetic marker27
Gene marker10
gene marker8
AFLP8
PCR Primer8
 
 Citrus grandis : 7740
Marker TypeNumber of markers
SSR6157
SNP1583
 
 Citrus iyo : 15
Marker TypeNumber of markers
PCR Primer15
 
 Citrus jambhiri : 4
Marker TypeNumber of markers
genetic marker3
PCR Primer1
 
 Citrus japonica : 10
Marker TypeNumber of markers
genetic marker10
 
 Citrus junos : 10
Marker TypeNumber of markers
PCR Primer10
 
 Citrus limon : 7
Marker TypeNumber of markers
genetic markers7
 
 Citrus limonia : 1
Marker TypeNumber of markers
gene marker1
 
 Citrus maxima : 5
Marker TypeNumber of markers
Gene marker5
 
 Citrus medica : 34
Marker TypeNumber of markers
genetic marker28
EST6
 
 Citrus paradisi : 31
Marker TypeNumber of markers
PCR Primer25
genetic marker4
gene marker2
 
 Citrus reshni : 17
Marker TypeNumber of markers
SSR17
 
 Citrus reticulata : 606
Marker TypeNumber of markers
SNP410
SSR110
VNTR38
PCR Primer24
PCR Primers22
SCAR2
 
 Citrus sinensis : 1367
Marker TypeNumber of markers
SSR717
RNA primer210
PCR Primer163
gene marker96
genetic marker40
genetic markers37
PCR marker30
PCR primer17
RAPD13
cDNA-AFLP13
Gene marker13
gene markers11
Gene markers6
gene primer1
 
 Citrus spp. : 36335
Marker TypeNumber of markers
SNP26440
DArTseq6431
SSR1031
CAPS526
RAPD506
SRAP274
genetic marker139
ISSR134
fAFLP119
PCR Primer91
RFLP88
EST-SSR66
STS59
Gene marker51
SCAR50
IRAP46
EST-STMS39
Indel29
Genetic marker26
SNP;CAPS25
gene marker21
CAPS;SNP21
VNTR16
RBC14
genetic primer12
InDel12
SCoT9
PCR9
LAMP marker8
gene markers7
PCR-RFLP6
POPG6
RACE Primer4
SSAP4
RGC3
genetic markers3
STS;SNP3
Restriction enzyme2
STMS2
SNP*1
SNP;STS1
isozyme1
 
 Citrus unshiu : 26
Marker TypeNumber of markers
gene marker8
PCR marker7
genetic markers5
Gene marker3
PCR Primer2
SSR1
 
 Citrus volkameriana : 17
Marker TypeNumber of markers
genetic marker8
RAPD7
SSR2
 
 Poncirus trifoliata : 132
Marker TypeNumber of markers
PCR markers49
PCR Primer27
Genetic marker11
genetic marker9
gene marker8
SSR6
EST5
RAPD4
SRAP3
Gene Primer3
gene markers3
Gene marker2
PCR1
IRAP1
 
 Phenotypes : 23070 phenotypic measurements , 38 trait descriptors
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Aegle marmelos99
Aeglopsis chevalieri99
Atalantia ceylanica1020
Atalantia citroides1010
Balsamocitrus dawei88
Bergera koenigii88
Citropsis articulata1010
Citropsis daweana1010
Citropsis gabunensis1010
Citropsis gilletiana1010
Citrus amblycarpa3737
Citrus asahikan2929
Citrus assamensis2947
Citrus benikoji3737
Citrus bergamia2971
Citrus canaliculata2929
Citrus cavaleriei2747
Citrus celebica3737
Citrus clementina2975
Citrus davaoensis3636
Citrus deliciosa2929
Citrus depressa2956
Citrus erythrosa2929
Citrus excelsa3794
Citrus funadoko2929
Citrus halimii1818
Citrus hanaju2929
Citrus hassaku3737
Citrus hiroshimana2958
Citrus hybr.37891
Citrus hystrix3086
Citrus indica2929
Citrus intermedia3737
Citrus iyo1010
Citrus keraji2947
Citrus kinokuni2957
Citrus latipes3755
Citrus leiocarpa3737
Citrus limetta29122
Citrus limettioides37166
Citrus longispina3737
Citrus lycopersiciformis3737
Citrus maderaspatana2929
Citrus maxima382036
Citrus medica38505
Citrus medica var. sarcodactylis2121
Citrus megaloxycarpa2828
Citrus miaray2929
Citrus montana2626
Citrus myrtifolia2987
Citrus natsudaidai2929
Citrus nippokoreana2929
Citrus nobilis3795
Citrus obovoidea2929
Citrus oleocarpa2929
Citrus otachibana2929
Citrus pennivesiculata2929
Citrus pyriformis2828
Citrus reshni2947
Citrus reticulata382406
Citrus rokugatsu2929
Citrus rugulosa2929
Citrus shunkokan2929
Citrus sinensis385120
Citrus sinograndis2828
Citrus spp.29155
Citrus succosa2929
Citrus sudachi2929
Citrus sulcata2929
Citrus sunki3737
Citrus tachibana2946
Citrus taiwanica3784
Citrus tamurana2947
Citrus tangerina3075
Citrus tardiva2929
Citrus temple2929
Citrus tengu2929
Citrus ujukitsu2929
Citrus unshiu29163
Citrus vitiensis2929
Citrus webberi3766
Citrus westeri2929
Citrus wilsonii2929
Citrus x aurantiifolia37308
Citrus x aurantium371001
Citrus x jambhiri37313
Citrus x junos2929
Citrus x latifolia29136
Citrus x limon371622
Citrus x meyeri2929
Citrus x paradisi301166
Citrus x tangelo30841
Citrus yatsushiro2929
Citrus yuko2929
Clausena anisata99
Clausena excavata1717
Clausena harmandiana88
Eremocitrus glauca3535
Fortunella hindsii1020
Fortunella hybr.2828
Fortunella japonica1010
Fortunella margarita1010
Fortunella x crassifolia1030
Fortunella x obovata2727
Glycosmis pentaphylla88
Microcitrus australasica37150
Microcitrus australis1837
Microcitrus hybr.1818
Microcitrus inodora1818
Microcitrus spp.2828
Microcitrus warburgiana1020
Murraya paniculata3366
Naringi crenulata1010
Oxanthera neocaledonica2929
Poncirus trifoliata371194
Severinia buxifolia2361
Severinia disticha88
X Citremocitrus spp.1010
X Citrofortunella microcarpa29103
X Citrofortunella spp.37141
X Citromicrocitrus spp.2828
X Citroncirus spp.381101
X Citroncirus webberi2929
X Fortucitrocirus spp.2848
X Microcitronella spp.1818
 
 Publications : 3990 publications
 
 QTL/MTL : 579 QTLs and 0 MTLs for 212 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
1,3-Pentadiene Content20
7-epi-alpha-Selinene Content30
9-cis-violaxanthin50
Acidity/soluble solid10
Acidity (total titratable acidity)50
Allo-ocimene isomer Content20
All-trans-violaxanthin60
Alpha-Selinene Content20
Alpha-Terpinene Content20
Aluminum concentration20
Anther Number10
Beta-phellandrene Content40
Boron concentration30
Calamenene Content40
Calcium concentration30
Change in water potential20
Chloride concentration20
Chroma index for color intensity10
Chromium concentration20
Citronellyl Acetate content50
Citrus Tristeza Virus Resistance70
cold tolerance80
Control Fine Root Dry Weight30
Control Fine Root Dry Weight/ Control Total Weight Chloride20
Control Fine Root Na Accumulation20
Control Fine Roots Chloride/Potassium Accumulation Percentage10
Control Leaf Chloride10
Control Leaf Chloride/Potassium Accumulation Percentage10
Control Leaf (Cl)10
Control Leaf Gram per Meter Dry Weight30
Control Leaf Potassium Accumulation Percentage20
Control Net Growth70
Control Percentage Fine Roots Chloride10
Control Percentage Fine Roots Sodium30
Control Percentage Leaf Chloride20
Control Percentage Leaf Sodium10
Control Percentage Stem Chloride10
Control Percentage Stem Sodium20
Control Percentage Structural Roots Chloride40
Control Percentage Structural Roots Sodium20
Control Stem Chloride10
Control Stem Dry Weight30
Control Stem Gram per Meter Dry Weight30
Control Stem Potassium Accumulation Percentage10
Control Stem Sodium40
Control Structural Root (Cl)10
Control Structural Root Dry Weight10
Control Structural Root Gram per Meter Dry Weight60
Control Structural Roots Chloride20
Control Structural Roots Potassium Accumulation Percentage10
Control Structural Roots Sodium20
Control Total Dry Weight20
Control Total Growth50
Control Total Plant Chloride30
Control Total Plant Chloride/Sodium20
Control Total Plant Sodium30
Control Whole Plant Chloride/Potassium10
Control Whole Plant (Cl)10
Control Whole Plant (Cl/Na)10
Copper concentration20
Defoliation index40
Delta-Cadinene Content30
Diameter (fruit10
Diameter (fruit)30
Dried leaf weight60
Dried root weight20
Duration of juvenility period40
Ease of peeling10
Ethanol Content50
Ethyl Acetate Content20
Flavedo color space value a80
Flavedo color space value a/ b80
Flavedo color space value b80
Flavedo color space value L60
Fresh leaf weight50
Fruit Segment10
Fruit weight60
Gamma-Terpinene Content20
Height (fruit)20
Height/width ratio10
Heptanal Content20
Hue angle for leaf color30
Iron Concentration40
Juice color space value a40
Juice color space value a/b50
Juice color space value b40
Juice color space value L10
Juice content20
Juice percentage10
Leaf area50
Leaf area increment20
Leaf color parameter b30
Leaf color parameter LCL30
Leaf Length10
Leaf Width20
Lutein40
Magnesium concentration20
Manganese concetration10
Molybdenum concentration10
Neryl acetate Content30
Nickel concentration20
Number of fruits per box10
Number of seeds40
Octanal Content20
Petal Length10
Petal Number10
Petal Width10
Phosphorus concentration60
Phytoene20
Phytophthora Gummosis Resistance30
Plant height20
p-Menth-1-en-9-ol acetate Content20
Potassium concentration20
Premnaspirodiene Content30
RI1495 Content40
RI1549 Content20
Saline Accumulation Leaf (Na)30
Saline Accumulation Stem (Na)30
Saline Accumulation Structural Root (Na)10
Salinized/Control Fine Root Gram per Meter Dry Weight10
Salinized/Control Leaf Dry Weight20
Salinized/Control Leaf Gram per Meter Dry Weight50
Salinized/Control Net Growth30
Salinized/Control Net Weight/ Salinized Percentage Structural Root Sodium10
Salinized/Control Stem Dry Weight20
Salinized/ Control Stem Gram per Meter Dry Weight20
Salinized/ Control Structural Roots Gram per Meter Dry Weight20
Salinized/Control Total Dry Weight10
Salinized/Control Total Gram per Meter Dry Weight10
Salinized/Control Total Growth10
Salinized Fine Root Dry Weight10
Salinized Fine Roots Chloride30
Salinized Fine Roots Chloride/Potassium Accumulation Percentage10
Salinized Fine Roots Gram per Meter Dry Weight30
Salinized Fine Roots Gram per Meter/Salinized Total Weight Chloride10
Salinized Fine Roots grams per Meter Dry Weight/Salinized Percentage Leaf Chloride20
Salinized Fine Roots Grams per Meter Dry Weight/ Salinized Total Weight Sodium10
Salinized Fine Roots Sodium10
Salinized Fine Roots Sodium/Potassium Accumulation Percentage40
Salinized Leaf Chloride20
Salinized Leaf Chloride/ Potassium20
Salinized Leaf (Cl)20
Salinized Leaf Dry Weight20
Salinized Leaf Gram per Meter Dry Weight40
Salinized Leaf (Na)30
Salinized Leaf Potassium10
Salinized Leaf Potassium Accumulation20
Salinized Leaf Sodium40
Salinized Leaf Sodium/Potassium Accumulation30
Salinized Leaf Sodium/Potassium Accumulation Percentage20
Salinized Net Growth30
Salinized Percentage Fine Roots Sodium10
Salinized Percentage Leaf Chloride10
Salinized Percentage Leaf Sodium30
Salinized Percentage Stem Sodium30
Salinized Percentage Structural Roots Chloride10
Salinized Percentage Structural Roots Sodium40
Salinized Stem Chloride20
Salinized Stem Chloride/Potassium Accumulation Percentage10
Salinized Stem (Cl)10
Salinized Stem Dry Weight40
Salinized Stem Gram per Meter Dry Weight40
Salinized Stem Sodium/Potassium Accumulation Percentage20
Salinized Structural Root Dry Weight30
Salinized Structural Root Grams per Meter/ Salinized Structural Root Sodium30
Salinized Structural Root (Na)20
Salinized Structural Roots Chloride10
Salinized Structural Roots Chloride/ Potassium10
Salinized Structural Roots Gram per Meter Dry Weight10
Salinized Structural Roots Sodium40
Salinized Structural Roots Sodium/Potassium Accumulation20
Salinized Structural Roots Sodium/Potassium Accumulation Percentage10
Salinized Total Dry Weight10
Salinized Total Gram per Meter Dry Weight70
Salinized Total Growth60
Salinized Total Plant Chloride40
Salinized Total Plant Chloride/ Sodium40
Salinized Total Plant Sodium10
Salinized Whole Plant Chloride/Potassium10
Salinized Whole Plant (Cl)10
Salinized Whole Plant (Cl/Na)30
Salinized Whole Plant Gram per Meter Dry Weight/ Salinized Structural Root Sodium20
Salinized Whole Plant Sodium/Potassium40
Seed Embryony30
Segments per fruit10
Sodium concentration60
Soluble solids content/ titratable acidity30
Soluble solid (total soluble solids)60
Spirolepechinene Content40
Strontium concentration40
Sulfur concentration30
Technological index50
Titanium concentration20
Total Carotenoid130
Total Violaxanthin50
total ζ-carotene30
Tree Canopy Width20
Tree Growth10
Tree Height20
Tree Vigor10
Trunk Diameter20
Trunk Diameter Growth20
Valencene Content40
Vanadium concentration20
Water concentration90
zeaxanthin20
Zinc concentration20
β-carotene20
β-cryptoxanthin30
ζ-carotene120
ζ-carotene230
ζ-carotene330
 
 Species : 67 species
GenusSpecies
Citrusamblycarpa, aurantifolia, aurantiifolia, aurantiifolia x Citrus japonica var. margarita, aurantium, benikoji, bergamia, cavaleriei, celebica, clementina, deliciosa, depressa, erythrosa, grandis, hassaku, hongheensis, hybrid, hystrix, ichangensis, indica, iyo, jambhiri, japonica var. margarita, junos, kinokuni, latifolia, latipes, leiocarpa, limettioides, limon, limonia, limonimedica, lycopersicaformis, macrophylla, macroptera, madurensis, maxima, medica, meyeri, micrantha, mitis, natsudaidai, nippokoreana, nobilis, oto, paradisi, platymamma, reshni, reticulata, reticulata x Citrus sinensis, sinensis, spp., suavissima, sudachi, sunki, tachibana, taiwanica, tamurana, tangerina, tankan, temple, trifoliata, unshiu, volkameriana, webberi, x paradisi
(Citrusunshiu x Citrus sinensis) x Citrus reticulata
Poncirustrifoliata
 
 Transcripts
Analysis NameNumber of features
Citrus clementina Unigene version 1.0 (Ccv1)reads : 117,758
contig : 15,548
singlets :
Citrus sinensis CGD RefTrans V1Reference Transcriptomes : 33111
Citrus sinensis Unigene version 1.0 (Csv1)reads : 206,813
contig : 13,856
singlets :
Citrus trifoliata Unigene version 1.0 (Ctv1)reads : 61,874
contig : 6,884
singlets :