Data Overview

 
 Genes : 1314086 genes and 2011702 mRNAs
SourceNumber of genesNumber of mRNA
Aegle marmelos cv. AEG genome v1.02851945573
Atalantia buxifolia cv. HKC v2.0 genome2602141806
Atalantia buxifolia genome v1.02841265499
Ca. L. africanus PTSAPSY genome10700
Ca. L. americanus Sao Paulo genome10220
Ca. L. asiaticus A4 genome11040
Ca. L. asiaticus gxpsy genome11460
Ca. L. asiaticus Ishi-1 genome10630
Ca. L. asiaticus JXGC genome11150
Ca. L. asiaticus psy62 genome10990
Ca. L. solanacearum CLso-ZC1 genome11470
Citropsis gilletiana cv. CGI genome v1.02822544060
Citrus australasica CRC3672 genome v15389158479
Citrus australasica cv. AZM genome v1.03164747342
Citrus australis genome v1.0 (UQ)2946432009
Citrus clementina genome v0.9 (JGI)035976
Citrus clementina genome v1.0 (JGI)2453333929
Citrus glauca CRC3463 genome v16486670672
Citrus hongheensis cv. HH genome v1.03052547000
Citrus ichangensis (C. cavaleriei) genome v1.03206743103
Citrus ichangensis cv. ZGYCC v2.0 genome 2945147961
Citrus inodora CRC3784 genome v1.05697262858
Citrus limon cv. Eureka genome v1.05666762633
Citrus limon cv. Xiangshui genome v1.02752125682
Citrus limon L. Burm f. genome v1.0 - Alternative3241534577
Citrus limon L. Burm f. genome v1.0 - Primary3289435020
Citrus linwuensis cv. LW genome v1.03141354459
Citrus mangshanensis cv. MSYG genome v1.02818145056
Citrus maxima (C. grandis) genome v1.03012342886
Citrus maxima Cupi Majiayou v1.0 genome2698844021
Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.02692639525
Citrus maxima cv. XGF genome v1.02782747488
Citrus medica genome v1.03257947506
Citrus reticulata genome v1.02883342676
Citrus sinensis cv. Gannanzao v1.0 genome2303723037
Citrus sinensis cv. Newhall v1.0 genome4667046670
Citrus sinensis cv. Valencia DVS_A genome v1.02780780451
Citrus sinensis cv. Valencia DVS_B genome v1.02794080120
Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)2987549567
Citrus sinensis genome v1.0 (JGI)046147
Citrus sinensis genome v1.1 (JGI)2537992294
Citrus sinensis Valencia genome v1.0 (HZAU)2965544275
Citrus sinensis Valencia genome v2.0 (HZAU)2913844853
Clausena lansium cv. HP genome v1.02903347277
Fortunella hindsii genome v1.03225752686
Fortunella hindsii S3y-45 genome v2.03256332563
L. crescens BT-0 genome13650
L. crescens BT-1 genome13540
Luvunga scandens cv. SYT genome v1.02466543964
Murraya paniculata cv. JLX genome v1.02285733550
Murraya paniculata genome v1.0 (Kunming)2354823548
Poncirus trifoliata acc. ZK8 v1.0 (HZAU)2568039675
Poncirus trifoliata genome v1.3.1 (JGI)2553733229
 
 Genomes : 57 genome assemblies
Genomes
Citrus sinensis genome v1.0 (JGI)
Citrus clementina genome v0.9 (JGI)
Citrus clementina genome v1.0 (JGI)
Citrus sinensis genome v1.1 (JGI)
Ca. L. asiaticus psy62 genome
Ca. L. asiaticus gxpsy genome
Ca. L. asiaticus A4 genome
Ca. L. asiaticus Ishi-1 genome
Ca. L. americanus Sao Paulo genome
Ca. L. africanus PTSAPSY genome
L. crescens BT-1 genome
L. crescens BT-0 genome
Ca. L. solanacearum CLso-ZC1 genome
Citrus sinensis Valencia genome v1.0 (HZAU)
Citrus maxima (C. grandis) genome v1.0
Citrus ichangensis (C. cavaleriei) genome v1.0
Citrus medica genome v1.0
Atalantia buxifolia genome v1.0
Citrus reticulata genome v1.0
Ca. L. asiaticus JXGC genome
Poncirus trifoliata genome v1.3.1 (JGI)
Fortunella hindsii genome v1.0
Citrus limon L. Burm f. genome v1.0
Citrus limon L. Burm f. genome v1.0 - Primary
Citrus limon L. Burm f. genome v1.0 - Alternative
Citrus sinensis Valencia genome v2.0 (HZAU)
Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)
Poncirus trifoliata acc. ZK8 v1.0 (HZAU)
Citrus sinensis cv. Valencia DVS_A genome v1.0
Citrus sinensis cv. Valencia DVS_B genome v1.0
Citrus australis genome v1.0 (UQ)
Citrus limon cv. Eureka genome v1.0
Citrus maxima Cupi Majiayou v1.0 genome
Fortunella hindsii S3y-45 genome v2.0
Citrus australasica CRC3672 genome v1
Citrus inodora CRC3784 genome v1.0
Citrus glauca CRC3463 genome v1
Citrus sinensis cv. Newhall v1.0 genome
Citrus sinensis cv. Gannanzao v1.0 genome
Atalantia buxifolia cv. HKC v2.0 genome
Citrus ichangensis cv. ZGYCC v2.0 genome
Citrus maxima cv. XGF genome v1.0
Citrus linwuensis cv. LW genome v1.0
Citrus mangshanensis cv. MSYG genome v1.0
Citrus australasica cv. AZM genome v1.0
Citrus hongheensis cv. HH genome v1.0
Murraya paniculata cv. JLX genome v1.0
Luvunga scandens cv. SYT genome v1.0
Aegle marmelos cv. AEG genome v1.0
Citropsis gilletiana cv. CGI genome v1.0
Clausena lansium cv. HP genome v1.0
Murraya paniculata genome v1.0 (Kunming)
Citrus inodora genome v1.0 (UQ)
Citrus glauca genome v1.0 (UQ)
Citrus garrawayi genome v1.0 (UQ)
Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0
Citrus limon cv. Xiangshui genome v1.0
 
 Germplasm : 2429 germplasm
 
 Aegle : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Aeglopsis : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Atalantia : 3
Germplasm TypeNumber of germplasm
wild_unimproved3
 
 Balsamocitrus : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Bergera : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citropsis : 4
Germplasm TypeNumber of germplasm
wild_unimproved4
 
 (Citrus : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus : 2243
Germplasm TypeNumber of germplasm
cultivar1321
wild_unimproved475
breeding_research_material324
population121
panel2
 
 Clausena : 3
Germplasm TypeNumber of germplasm
wild_unimproved2
cultivar1
 
 Eremocitrus : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Fortunella : 12
Germplasm TypeNumber of germplasm
wild_unimproved5
cultivar4
breeding_research_material3
 
 Glycosmis : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Microcitrus : 16
Germplasm TypeNumber of germplasm
wild_unimproved14
cultivar2
 
 Murraya : 2
Germplasm TypeNumber of germplasm
wild_unimproved2
 
 Naringi : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Oxanthera : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Poncirus : 70
Germplasm TypeNumber of germplasm
cultivar50
population7
wild_unimproved7
breeding_research_material6
 
 Severinia : 7
Germplasm TypeNumber of germplasm
wild_unimproved6
cultivar1
 
 X Citremocitrus : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 X Citrofortunella : 12
Germplasm TypeNumber of germplasm
cultivar10
wild_unimproved2
 
 X Citromicrocitrus : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 X Citroncirus : 40
Germplasm TypeNumber of germplasm
cultivar36
wild_unimproved3
breeding_research_material1
 
 X Fortucitrocirus : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 X Microcitronella : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Maps : 92 maps
 
 Citrus clementina : 3
Map TypeNumber of maps
genetic3
 
 Citrus grandis : 9
Map TypeNumber of maps
genetic6
physical3
 
 Citrus reshni : 3
Map TypeNumber of maps
genetic3
 
 Citrus reticulata : 7
Map TypeNumber of maps
genetic7
 
 Citrus sinensis : 2
Map TypeNumber of maps
genetic2
 
 Citrus spp. : 60
Map TypeNumber of maps
genetic60
 
 Citrus volkameriana : 1
Map TypeNumber of maps
genetic1
 
 Poncirus trifoliata : 7
Map TypeNumber of maps
genetic7
 
 Markers : 66214 markers
 
 Citrus aurantifolia : 15
Marker TypeNumber of markers
PCR marker14
genetic marker1
 
 Citrus aurantiifolia : 7
Marker TypeNumber of markers
PCR marker7
 
 Citrus aurantium : 47
Marker TypeNumber of markers
SSR17
EST13
genetic marker5
SRAP5
RAPD4
IRAP3
 
 Citrus clementina : 1968
Marker TypeNumber of markers
SNP1681
SSR154
gene marker47
Indel43
genetic marker27
PCR marker8
AFLP8
 
 Citrus grandis : 8004
Marker TypeNumber of markers
SSR6157
SNP1583
Indel264
 
 Citrus iyo : 15
Marker TypeNumber of markers
PCR marker15
 
 Citrus jambhiri : 4
Marker TypeNumber of markers
genetic marker3
PCR marker1
 
 Citrus japonica : 10
Marker TypeNumber of markers
genetic marker10
 
 Citrus junos : 10
Marker TypeNumber of markers
PCR marker10
 
 Citrus limon : 7
Marker TypeNumber of markers
genetic marker7
 
 Citrus limonia : 1
Marker TypeNumber of markers
gene marker1
 
 Citrus maxima : 257
Marker TypeNumber of markers
SNP252
gene marker5
 
 Citrus medica : 34
Marker TypeNumber of markers
genetic marker28
EST6
 
 Citrus paradisi : 31
Marker TypeNumber of markers
PCR marker25
genetic marker4
gene marker2
 
 Citrus reshni : 17
Marker TypeNumber of markers
SSR17
 
 Citrus reticulata : 2678
Marker TypeNumber of markers
SNP2481
SSR111
PCR marker46
VNTR38
SCAR2
 
 Citrus sinensis : 2191
Marker TypeNumber of markers
SNP754
SSR717
PCR marker212
RNA primer210
gene marker128
genetic marker81
EST-SSR49
RAPD13
cDNA-AFLP13
STS10
Indel4
 
 Citrus spp. : 50091
Marker TypeNumber of markers
SNP34504
DArT7552
SLAF4023
SSR1279
CAPS584
RAPD531
SRAP274
genetic marker273
ISSR134
fAFLP119
EST110
PCR marker101
RFLP90
gene marker79
EST-SSR66
STS63
Indel62
SCAR55
IRAP46
EST-STMS39
AFLP34
VNTR16
RBC14
SCoT9
LAMP8
POPG6
PCR-RFLP6
RACE4
SSAP4
RGC3
STMS2
Isozyme1
 
 Citrus unshiu : 27
Marker TypeNumber of markers
gene marker12
PCR marker9
genetic marker5
SSR1
 
 Citrus volkameriana : 17
Marker TypeNumber of markers
genetic marker8
RAPD7
SSR2
 
 Poncirus trifoliata : 783
Marker TypeNumber of markers
SNP648
PCR marker80
genetic marker20
gene marker16
SSR6
EST5
RAPD4
SRAP3
IRAP1
 
 Phenotypes : 23501 phenotypic measurements , 48 trait descriptors
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Aegle marmelos99
Aeglopsis chevalieri99
Atalantia ceylanica1020
Atalantia citroides1010
Balsamocitrus dawei88
Bergera koenigii88
Citropsis articulata1010
Citropsis daweana1010
Citropsis gabunensis1010
Citropsis gilletiana1010
Citrus amblycarpa3737
Citrus asahikan2929
Citrus assamensis2947
Citrus benikoji3737
Citrus bergamia2971
Citrus canaliculata2929
Citrus cavaleriei2747
Citrus celebica3737
Citrus clementina2975
Citrus davaoensis3636
Citrus deliciosa2929
Citrus depressa2956
Citrus erythrosa2929
Citrus excelsa3794
Citrus funadoko2929
Citrus halimii1818
Citrus hanaju2929
Citrus hassaku3737
Citrus hiroshimana2958
Citrus hybr.37891
Citrus hystrix3086
Citrus indica2929
Citrus intermedia3737
Citrus iyo1010
Citrus keraji2947
Citrus kinokuni2957
Citrus latipes3755
Citrus leiocarpa3737
Citrus limetta29122
Citrus limettioides37166
Citrus longispina3737
Citrus lycopersiciformis3737
Citrus maderaspatana2929
Citrus maxima382036
Citrus medica38505
Citrus medica var. sarcodactylis2121
Citrus megaloxycarpa2828
Citrus miaray2929
Citrus montana2626
Citrus myrtifolia2987
Citrus natsudaidai2929
Citrus nippokoreana2929
Citrus nobilis3795
Citrus obovoidea2929
Citrus oleocarpa2929
Citrus otachibana2929
Citrus pennivesiculata2929
Citrus pyriformis2828
Citrus reshni2947
Citrus reticulata382406
Citrus rokugatsu2929
Citrus rugulosa2929
Citrus shunkokan2929
Citrus sinensis485551
Citrus sinograndis2828
Citrus spp.29155
Citrus succosa2929
Citrus sudachi2929
Citrus sulcata2929
Citrus sunki3737
Citrus tachibana2946
Citrus taiwanica3784
Citrus tamurana2947
Citrus tangerina3075
Citrus tardiva2929
Citrus temple2929
Citrus tengu2929
Citrus ujukitsu2929
Citrus unshiu29163
Citrus vitiensis2929
Citrus webberi3766
Citrus westeri2929
Citrus wilsonii2929
Citrus x aurantiifolia37308
Citrus x aurantium371001
Citrus x jambhiri37313
Citrus x junos2929
Citrus x latifolia29136
Citrus x limon371622
Citrus x meyeri2929
Citrus x paradisi301166
Citrus x tangelo30841
Citrus yatsushiro2929
Citrus yuko2929
Clausena anisata99
Clausena excavata1717
Clausena harmandiana88
Eremocitrus glauca3535
Fortunella hindsii1020
Fortunella hybr.2828
Fortunella japonica1010
Fortunella margarita1010
Fortunella x crassifolia1030
Fortunella x obovata2727
Glycosmis pentaphylla88
Microcitrus australasica37150
Microcitrus australis1837
Microcitrus hybr.1818
Microcitrus inodora1818
Microcitrus spp.2828
Microcitrus warburgiana1020
Murraya paniculata3366
Naringi crenulata1010
Oxanthera neocaledonica2929
Poncirus trifoliata371194
Severinia buxifolia2361
Severinia disticha88
X Citremocitrus spp.1010
X Citrofortunella microcarpa29103
X Citrofortunella spp.37141
X Citromicrocitrus spp.2828
X Citroncirus spp.381101
X Citroncirus webberi2929
X Fortucitrocirus spp.2848
X Microcitronella spp.1818
 
 Publications : 7264 publications
 
 QTL/MTL : 776 QTLs and 1 MTLs for 176 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
1,3-Pentadiene Content20
7-epi-alpha-Selinene Content30
9-cis-violaxanthin70
Acidity (total titratable acidity)50
Alkane content10
Allo-ocimene isomer Content20
All-trans-violaxanthin60
Alpha-farnesene content10
Alpha-pinene content20
Alpha-Selinene Content20
Alpha-sinensal content10
Alpha-Terpinene Content20
Aluminum concentration20
Anther Number10
Auroxanthin content20
Beta-carotene content20
Beta-cryptoxanthin content40
Beta-phellandrene Content40
Beta-pinene content10
Boron concentration30
Calamenene Content40
Calcium concentration80
Carbon concentration10
Change in water potential20
Chloride concentration110
Chroma index for color intensity10
Chromium concentration20
Citronellal content10
Citronellyl Acetate content50
Citrus color index content20
Citrus Tristeza Virus Resistance70
cold tolerance80
Copper concentration20
Decanal content10
Defoliation index40
Delta-Cadinene Content50
Diameter (fruit)40
Dodecanal content10
Duration of juvenility period40
Ease of peeling10
Ethanol Content50
Ethyl Acetate Content20
Flavedo color space value a80
Flavedo color space value a/ b80
Flavedo color space value b80
Flavedo color space value L60
Fresh leaf weight50
Fruit water loss rate10
Fruit water rot10
Fruit weight170
Gamma-Terpinene Content20
Geranial content10
Height (fruit)20
Height to Leaf Dry Weight Ratio120
Height to Root Dry Weight Ratio130
Height to Root Dry Weight to Leaf Chloride Ratio20
Height to Root Dry Weight to Root Sodium Ratio30
Height to Root Dry Weight to Whole Plant Chloride Ratio10
Height to Root Dry Weight to Whole Plant Sodium Ratio10
Height to Stem Dry Weight Ratio90
Height to Whole Plant Dry Weight Ratio80
Height to Whole Plant Dry Weight to Root Sodium Ratio20
Height/width ratio10
Heptanal Content20
HLB Canopy Damage50
HLB Foliar Symptoms130
HLB-induced callose synthase expression520
Hue angle for leaf color30
Iron Concentration120
Juice color space value a40
Juice color space value a/b50
Juice color space value b40
Juice color space value L10
Juice content20
Juice percentage10
Leaf area50
Leaf area increment20
Leaf Chloride content90
Leaf Chloride to Potassium Ratio30
Leaf color parameter b30
Leaf color parameter LCL30
Leaf Dry Weight100
Leaf Length10
Leaf Potassium content50
Leaf Sodium content140
Leaf Sodium to Potassium Ratio50
Leaf Width20
Limonene-10-ol content10
Limonene content20
Lutein50
Luteoxanthin content20
Magnesium concentration20
Manganese concetration10
Molybdenum concentration10
Neoxanthin content20
Neral content10
Neryl acetate Content30
Nickel concentration30
Nitrogen concentration20
Nobiletin concentration40
Number of fruits per box10
Number of ripe fruit40
Number of seeds40
Octanal Content30
Peel puffing60
PEO yield20
Percent aldehyde10
Percent alkane10
Percent fatty acid10
Petal Length10
Petal Number10
Petal Width10
Phosphorus concentration50
Phytoene30
Phytofluene content10
Phytophthora Gummosis Resistance30
Plant height20
p-Menth-1-en-9-ol acetate Content20
Pollen fertility50
Pollen grains per anther60
Potassium concentration80
Premnaspirodiene Content30
RI1495 Content40
RI1549 Content20
Root Chloride content130
Root Chloride to Potassium Ratio30
Root Dry Weight140
Root Dry Weight to Whole Plant Chloride Ratio20
Root Potassium content10
Root Sodium content220
Root Sodium to Potassium Ratio70
Sabinene content10
Seed Embryony30
Seedlessness01
Segments per fruit20
Sodium concentration80
Soluble solids content/ titratable acidity40
Soluble solid (total soluble solids)120
Spirolepechinene Content40
Stem Chloride content50
Stem Chloride to Potassium Ratio10
Stem Dry Weight90
Stem Potassium content10
Stem Sodium content120
Stem Sodium to Potassium Ratio20
Strontium concentration40
Sulfur concentration30
Tangeretin concentration30
Technological index50
Titanium concentration20
Total Carotenoid160
Total Violaxanthin50
Total zeta-carotene content30
Tree Canopy Width20
Tree Growth10
Tree Height20
Tree Vigor10
Trunk Diameter20
Trunk Diameter Growth20
Valencene Content50
Vanadium concentration20
Water concentration90
Whole Plant Chloride content90
Whole Plant Chloride to Potassium Ratio20
Whole Plant Chloride to Sodium Ratio100
Whole Plant Dry Weight40
Whole Plant Net Growth130
Whole Plant Sodium content40
Whole Plant Sodium to Potassium Ratio40
Whole Plant Total Growth120
Whole Plant Weight to Root Sodium Ratio10
zeaxanthin40
Zeta-carotene120
Zeta-carotene230
Zeta-carotene330
Zinc concentration20
 
 Species : 149 species
GenusSpecies
Aeglemarmelos
Aeglopsischevalieri
Atalantiaceylanica, citroides
Balsamocitrusdawei
Bergerakoenigii
Citropsisarticulata, daweana, gabunensis, gilletiana
(Citrusunshiu x Citrus sinensis) x Citrus reticulata
Citrusamblycarpa, asahikan, assamensis, aurantifolia, aurantiifolia, aurantiifolia x Citrus japonica var. margarita, aurantium, benikoji, bergamia, canaliculata, cavaleriei, celebica, clementina, davaoensis, deliciosa, depressa, erythrosa, excelsa, funadoko, grandis, halimii, hanaju, hassaku, hiroshimana, hongheensis, hybr., hybrid, hystrix, ichangensis, indica, intermedia, iyo, jambhiri, japonica var. margarita, junos, keraji, kinokuni, latifolia, latipes, leiocarpa, limetta, limettioides, limon, limonia, limonimedica, longispina, lycopersicaformis, lycopersiciformis, macrophylla, macroptera, maderaspatana, madurensis, maxima, medica, medica var. sarcodactylis, megaloxycarpa, meyeri, miaray, micrantha, mitis, montana, myrtifolia, natsudaidai, neoaurantium, nippokoreana, nobilis, obovoidea, oleocarpa, otachibana, oto, paradisi, pennivesiculata, platymamma, pyriformis, reshni, reticulata, reticulata x Citrus sinensis, rokugatsu, rugulosa, shunkokan, sinensis, sinograndis, spp., suavissima, succosa, sudachi, sulcata, sunki, tachibana, taiwanica, tamurana, tangelo, tangerina, tankan, tardiva, temple, tengu, trifoliata, ujukitsu, unshiu, vitiensis, volkameriana, webberi, westeri, wilsonii, x aurantiifolia, x aurantium, x jambhiri, x junos, x latifolia, x limon, x meyeri, x paradisi, x tangelo, yatsushiro, yuko
Clausenaanisata, excavata, harmandiana
Eremocitrusglauca
Fortunellacrassifolia, hindsii, hybr., japonica, margarita, polyandra, x crassifolia, x obovata
Glycosmispentaphylla
Microcitrusaustralasica, australis, hybr., inodora, spp., warburgiana
Murrayapaniculata
Naringicrenulata
Oxantheraneocaledonica
Poncirustrifoliata
Severiniabuxifolia, disticha
X Citremocitrusspp.
X Citrofortunellamicrocarpa, spp.
X Citromicrocitrusspp.
X Citroncirusspp., webberi
X Fortucitrocirusspp.
X Microcitronellaspp.
 
 Transcripts
Analysis NameNumber of features
Citrus clementina Unigene version 1.0 (Ccv1)contig : 15,548
reads : 117,758
singlets :
Citrus sinensis CGD RefTrans V1Reference Transcriptomes : 33111
Citrus sinensis Unigene version 1.0 (Csv1)contig : 13,856
reads : 206,813
singlets :
Citrus trifoliata Unigene version 1.0 (Ctv1)reads : 61,874
singlets :
contig : 6,884