Data Overview

 
 Genes : 243066 genes and 494291 mRNAs
 
 Genomes
 
 Germplasm : 1430 germplasm
 
 Citrus amblycarpa : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus aurantifolia : 10
Germplasm TypeNumber of germplasm
cultivar8
breeding_research_material2
 
 Citrus aurantiifolia : 27
Germplasm TypeNumber of germplasm
wild_unimproved18
cultivar9
 
 Citrus aurantiifolia x Citrus japonica var. margarita : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus aurantium : 87
Germplasm TypeNumber of germplasm
cultivar65
wild_unimproved19
breeding_research_material3
 
 Citrus benikoji : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus bergamia : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus cavaleriei : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus celebica : 4
Germplasm TypeNumber of germplasm
cultivar4
 
 Citrus clementina : 12
Germplasm TypeNumber of germplasm
cultivar8
breeding_research_material3
population1
 
 Citrus deliciosa : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus depressa : 2
Germplasm TypeNumber of germplasm
cultivar1
wild_unimproved1
 
 Citrus erythrosa : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus grandis : 59
Germplasm TypeNumber of germplasm
cultivar53
breeding_research_material3
population3
 
 Citrus hassaku : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus hongheensis : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus hybrid : 4
Germplasm TypeNumber of germplasm
wild_unimproved3
cultivar1
 
 Citrus hystrix : 6
Germplasm TypeNumber of germplasm
cultivar5
wild_unimproved1
 
 Citrus ichangensis : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus indica : 5
Germplasm TypeNumber of germplasm
cultivar3
breeding_research_material1
wild_unimproved1
 
 Citrus iyo : 2
Germplasm TypeNumber of germplasm
breeding_research_material1
cultivar1
 
 Citrus jambhiri : 4
Germplasm TypeNumber of germplasm
cultivar3
breeding_research_material1
 
 Citrus japonica var. margarita : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus junos : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus kinokuni : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus latifolia : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus latipes : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus leiocarpa : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus limettioides : 5
Germplasm TypeNumber of germplasm
cultivar3
breeding_research_material2
 
 Citrus limon : 77
Germplasm TypeNumber of germplasm
cultivar53
wild_unimproved23
breeding_research_material1
 
 Citrus limonia : 18
Germplasm TypeNumber of germplasm
cultivar18
 
 Citrus limonimedica : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus lycopersicaformis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus macrophylla : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus macroptera : 2
Germplasm TypeNumber of germplasm
breeding_research_material1
cultivar1
 
 Citrus madurensis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus maxima : 76
Germplasm TypeNumber of germplasm
wild_unimproved46
cultivar28
breeding_research_material2
 
 Citrus medica : 55
Germplasm TypeNumber of germplasm
breeding_research_material20
wild_unimproved19
cultivar16
 
 Citrus meyeri : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus micrantha : 4
Germplasm TypeNumber of germplasm
cultivar4
 
 Citrus mitis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus natsudaidai : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus nippokoreana : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus nobilis : 5
Germplasm TypeNumber of germplasm
cultivar4
wild_unimproved1
 
 Citrus oto : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citrus paradisi : 58
Germplasm TypeNumber of germplasm
cultivar54
wild_unimproved2
breeding_research_material2
 
 Citrus platymamma : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus reshni : 3
Germplasm TypeNumber of germplasm
breeding_research_material2
cultivar1
 
 Citrus reticulata : 229
Germplasm TypeNumber of germplasm
cultivar163
wild_unimproved47
breeding_research_material16
population3
 
 Citrus reticulata x Citrus sinensis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus sinensis : 228
Germplasm TypeNumber of germplasm
cultivar204
breeding_research_material20
wild_unimproved3
population1
 
 Citrus spp. : 320
Germplasm TypeNumber of germplasm
cultivar120
breeding_research_material96
population95
wild_unimproved9
 
 Citrus suavissima : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus sudachi : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus sunki : 7
Germplasm TypeNumber of germplasm
cultivar6
wild_unimproved1
 
 Citrus tachibana : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus taiwanica : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus tamurana : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus tangerina : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus tankan : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citrus temple : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus trifoliata : 2
Germplasm TypeNumber of germplasm
breeding_research_material1
cultivar1
 
 Citrus unshiu : 21
Germplasm TypeNumber of germplasm
cultivar18
breeding_research_material3
 
 (Citrus unshiu x Citrus sinensis) x Citrus reticulata : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus volkameriana : 4
Germplasm TypeNumber of germplasm
cultivar3
population1
 
 Citrus webberi : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus x paradisi : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Poncirus trifoliata : 31
Germplasm TypeNumber of germplasm
cultivar14
wild_unimproved7
population6
breeding_research_material4
 
 Maps : 73 maps
 
 Citrus clementina : 3
Map TypeNumber of maps
genetic3
 
 Citrus grandis : 9
Map TypeNumber of maps
genetic6
physical3
 
 Citrus reshni : 3
Map TypeNumber of maps
Genetic3
 
 Citrus reticulata : 5
Map TypeNumber of maps
physical3
genetic2
 
 Citrus sinensis : 3
Map TypeNumber of maps
genetic3
 
 Citrus spp. : 41
Map TypeNumber of maps
genetic35
Genetic6
 
 Citrus volkameriana : 1
Map TypeNumber of maps
genetic1
 
 Poncirus trifoliata : 8
Map TypeNumber of maps
genetic5
Genetic3
 
 Markers : 49642 markers
 
 Citrus aurantifolia : 15
Marker TypeNumber of markers
PCR Marker7
PCR Primer7
genetic marker1
 
 Citrus aurantiifolia : 7
Marker TypeNumber of markers
PCR Primer7
 
 Citrus aurantium : 47
Marker TypeNumber of markers
SSR17
EST13
genetic marker5
SRAP5
RAPD4
IRAP3
 
 Citrus clementina : 1799
Marker TypeNumber of markers
SNP1566
SSR100
Indel43
GENE MARKER29
genetic marker27
Gene marker10
gene marker8
PCR Primer8
AFLP8
 
 Citrus grandis : 7740
Marker TypeNumber of markers
SSR6157
SNP1583
 
 Citrus iyo : 15
Marker TypeNumber of markers
PCR Primer15
 
 Citrus jambhiri : 4
Marker TypeNumber of markers
genetic marker3
PCR Primer1
 
 Citrus japonica : 10
Marker TypeNumber of markers
genetic marker10
 
 Citrus junos : 10
Marker TypeNumber of markers
PCR Primer10
 
 Citrus limon : 7
Marker TypeNumber of markers
genetic marker7
 
 Citrus limonia : 1
Marker TypeNumber of markers
gene marker1
 
 Citrus maxima : 5
Marker TypeNumber of markers
Gene marker5
 
 Citrus medica : 34
Marker TypeNumber of markers
genetic marker28
EST6
 
 Citrus paradisi : 31
Marker TypeNumber of markers
PCR Primer25
genetic marker4
gene marker2
 
 Citrus reshni : 17
Marker TypeNumber of markers
SSR17
 
 Citrus reticulata : 607
Marker TypeNumber of markers
SNP410
SSR111
PCR Primer46
VNTR38
SCAR2
 
 Citrus sinensis : 2128
Marker TypeNumber of markers
SNP754
SSR717
RNA primer210
PCR Primer164
gene marker107
genetic marker79
PCR marker30
PCR primer18
Gene marker14
cDNA-AFLP13
RAPD13
Gene markers6
GENETIC MARKERS2
gene primer1
 
 Citrus spp. : 36339
Marker TypeNumber of markers
SNP26444
DArTseq6431
SSR1031
CAPS526
RAPD506
SRAP274
genetic marker142
ISSR134
fAFLP119
PCR Primer92
RFLP88
EST-SSR66
STS59
Gene marker51
SCAR50
IRAP46
EST-STMS39
Indel29
gene marker28
Genetic marker26
SNP;CAPS25
CAPS;SNP21
VNTR16
RBC14
genetic primer12
InDel12
PCR9
SCoT9
LAMP marker8
POPG6
PCR-RFLP6
RACE Primer4
SSAP4
STS;SNP3
RGC3
STMS2
Restriction enzyme2
isozyme1
SNP;STS1
 
 Citrus unshiu : 27
Marker TypeNumber of markers
gene marker9
PCR marker7
genetic marker5
Gene marker3
PCR Primer2
SSR1
 
 Citrus volkameriana : 17
Marker TypeNumber of markers
genetic marker8
RAPD7
SSR2
 
 Poncirus trifoliata : 782
Marker TypeNumber of markers
SNP647
PCR marker49
PCR Primer30
Genetic marker11
gene marker11
genetic marker9
SSR6
EST5
RAPD4
Gene Primer3
SRAP3
Gene marker2
PCR1
IRAP1
 
 Phenotypes : 23070 phenotypic measurements , 38 trait descriptors
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Aegle marmelos99
Aeglopsis chevalieri99
Atalantia ceylanica1020
Atalantia citroides1010
Balsamocitrus dawei88
Bergera koenigii88
Citropsis articulata1010
Citropsis daweana1010
Citropsis gabunensis1010
Citropsis gilletiana1010
Citrus amblycarpa3737
Citrus asahikan2929
Citrus assamensis2947
Citrus benikoji3737
Citrus bergamia2971
Citrus canaliculata2929
Citrus cavaleriei2747
Citrus celebica3737
Citrus clementina2975
Citrus davaoensis3636
Citrus deliciosa2929
Citrus depressa2956
Citrus erythrosa2929
Citrus excelsa3794
Citrus funadoko2929
Citrus halimii1818
Citrus hanaju2929
Citrus hassaku3737
Citrus hiroshimana2958
Citrus hybr.37891
Citrus hystrix3086
Citrus indica2929
Citrus intermedia3737
Citrus iyo1010
Citrus keraji2947
Citrus kinokuni2957
Citrus latipes3755
Citrus leiocarpa3737
Citrus limetta29122
Citrus limettioides37166
Citrus longispina3737
Citrus lycopersiciformis3737
Citrus maderaspatana2929
Citrus maxima382036
Citrus medica38505
Citrus medica var. sarcodactylis2121
Citrus megaloxycarpa2828
Citrus miaray2929
Citrus montana2626
Citrus myrtifolia2987
Citrus natsudaidai2929
Citrus nippokoreana2929
Citrus nobilis3795
Citrus obovoidea2929
Citrus oleocarpa2929
Citrus otachibana2929
Citrus pennivesiculata2929
Citrus pyriformis2828
Citrus reshni2947
Citrus reticulata382406
Citrus rokugatsu2929
Citrus rugulosa2929
Citrus shunkokan2929
Citrus sinensis385120
Citrus sinograndis2828
Citrus spp.29155
Citrus succosa2929
Citrus sudachi2929
Citrus sulcata2929
Citrus sunki3737
Citrus tachibana2946
Citrus taiwanica3784
Citrus tamurana2947
Citrus tangerina3075
Citrus tardiva2929
Citrus temple2929
Citrus tengu2929
Citrus ujukitsu2929
Citrus unshiu29163
Citrus vitiensis2929
Citrus webberi3766
Citrus westeri2929
Citrus wilsonii2929
Citrus x aurantiifolia37308
Citrus x aurantium371001
Citrus x jambhiri37313
Citrus x junos2929
Citrus x latifolia29136
Citrus x limon371622
Citrus x meyeri2929
Citrus x paradisi301166
Citrus x tangelo30841
Citrus yatsushiro2929
Citrus yuko2929
Clausena anisata99
Clausena excavata1717
Clausena harmandiana88
Eremocitrus glauca3535
Fortunella hindsii1020
Fortunella hybr.2828
Fortunella japonica1010
Fortunella margarita1010
Fortunella x crassifolia1030
Fortunella x obovata2727
Glycosmis pentaphylla88
Microcitrus australasica37150
Microcitrus australis1837
Microcitrus hybr.1818
Microcitrus inodora1818
Microcitrus spp.2828
Microcitrus warburgiana1020
Murraya paniculata3366
Naringi crenulata1010
Oxanthera neocaledonica2929
Poncirus trifoliata371194
Severinia buxifolia2361
Severinia disticha88
X Citremocitrus spp.1010
X Citrofortunella microcarpa29103
X Citrofortunella spp.37141
X Citromicrocitrus spp.2828
X Citroncirus spp.381101
X Citroncirus webberi2929
X Fortucitrocirus spp.2848
X Microcitronella spp.1818
 
 Publications : 4378 publications
 
 QTL/MTL : 597 QTLs and 0 MTLs for 147 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
1,3-Pentadiene Content20
7-epi-alpha-Selinene Content30
9-cis-violaxanthin50
Acidity/soluble solid10
Acidity (total titratable acidity)50
Allo-ocimene isomer Content20
All-trans-violaxanthin60
Alpha-Selinene Content20
Alpha-Terpinene Content20
Aluminum concentration20
Anther Number10
Beta-phellandrene Content40
Boron concentration30
Calamenene Content40
Calcium concentration30
Change in water potential20
Chloride concentration20
Chroma index for color intensity10
Chromium concentration20
Citronellyl Acetate content50
Citrus Tristeza Virus Resistance70
cold tolerance80
Copper concentration20
Defoliation index40
Delta-Cadinene Content30
Diameter (fruit10
Diameter (fruit)30
Dried leaf weight60
Dried root weight20
Duration of juvenility period40
Ease of peeling10
Ethanol Content50
Ethyl Acetate Content20
Flavedo color space value a80
Flavedo color space value a/ b80
Flavedo color space value b80
Flavedo color space value L60
Fresh leaf weight50
Fruit Segment10
Fruit weight60
Gamma-Terpinene Content20
Height (fruit)20
Height to Leaf Dry Weight Ratio120
Height to Root Dry Weight Ratio130
Height to Root Dry Weight to Leaf Chloride Ratio20
Height to Root Dry Weight to Root Sodium Ratio30
Height to Root Dry Weight to Whole Plant Chloride Ratio10
Height to Root Dry Weight to Whole Plant Sodium Ratio10
Height to Stem Dry Weight Ratio90
Height to Whole Plant Dry Weight Ratio80
Height to Whole Plant Dry Weight to Root Sodium Ratio20
Height/width ratio10
Heptanal Content20
HLB Canopy Damage50
HLB Foliar Symptoms130
Hue angle for leaf color30
Iron Concentration40
Juice color space value a40
Juice color space value a/b50
Juice color space value b40
Juice color space value L10
Juice content20
Juice percentage10
Leaf area50
Leaf area increment20
Leaf Chloride content90
Leaf Chloride to Potassium Ratio30
Leaf color parameter b30
Leaf color parameter LCL30
Leaf Dry Weight40
Leaf Length10
Leaf Potassium content50
Leaf Sodium content140
Leaf Sodium to Potassium Ratio50
Leaf Width20
Lutein40
Magnesium concentration20
Manganese concetration10
Molybdenum concentration10
Neryl acetate Content30
Nickel concentration30
Number of fruits per box10
Number of seeds40
Octanal Content20
Petal Length10
Petal Number10
Petal Width10
Phosphorus concentration50
Phytoene20
Phytophthora Gummosis Resistance30
Plant height20
p-Menth-1-en-9-ol acetate Content20
Potassium concentration20
Premnaspirodiene Content30
RI1495 Content40
RI1549 Content20
Root Chloride content130
Root Chloride to Potassium Ratio30
Root Dry Weight80
Root Dry Weight to Whole Plant Chloride Ratio20
Root Potassium content10
Root Sodium content220
Root Sodium to Potassium Ratio70
Seed Embryony30
Segments per fruit10
Sodium concentration60
Soluble solids content/ titratable acidity30
Soluble solid (total soluble solids)60
Spirolepechinene Content40
Stem Chloride content50
Stem Chloride to Potassium Ratio10
Stem Dry Weight90
Stem Potassium content10
Stem Sodium content120
Stem Sodium to Potassium Ratio20
Strontium concentration40
Sulfur concentration30
Technological index50
Titanium concentration20
Total Carotenoid130
Total Violaxanthin50
total ζ-carotene30
Tree Canopy Width20
Tree Growth10
Tree Height20
Tree Vigor10
Trunk Diameter20
Trunk Diameter Growth20
Valencene Content40
Vanadium concentration20
Water concentration90
Whole Plant Chloride content90
Whole Plant Chloride to Potassium Ratio20
Whole Plant Chloride to Sodium Ratio100
Whole Plant Dry Weight40
Whole Plant Net Growth130
Whole Plant Sodium content40
Whole Plant Sodium to Potassium Ratio40
Whole Plant Total Growth120
Whole Plant Weight to Root Sodium Ratio10
zeaxanthin20
Zinc concentration20
β-carotene20
β-cryptoxanthin30
ζ-carotene120
ζ-carotene230
ζ-carotene330
 
 Species : 67 species
GenusSpecies
Citrusamblycarpa, aurantifolia, aurantiifolia, aurantiifolia x Citrus japonica var. margarita, aurantium, benikoji, bergamia, cavaleriei, celebica, clementina, deliciosa, depressa, erythrosa, grandis, hassaku, hongheensis, hybrid, hystrix, ichangensis, indica, iyo, jambhiri, japonica var. margarita, junos, kinokuni, latifolia, latipes, leiocarpa, limettioides, limon, limonia, limonimedica, lycopersicaformis, macrophylla, macroptera, madurensis, maxima, medica, meyeri, micrantha, mitis, natsudaidai, nippokoreana, nobilis, oto, paradisi, platymamma, reshni, reticulata, reticulata x Citrus sinensis, sinensis, spp., suavissima, sudachi, sunki, tachibana, taiwanica, tamurana, tangerina, tankan, temple, trifoliata, unshiu, volkameriana, webberi, x paradisi
(Citrusunshiu x Citrus sinensis) x Citrus reticulata
Poncirustrifoliata
 
 Transcripts
Analysis NameNumber of features
Citrus clementina Unigene version 1.0 (Ccv1)contig : 15,548
reads : 117,758
singlets :
Citrus sinensis CGD RefTrans V1Reference Transcriptomes : 33111
Citrus sinensis Unigene version 1.0 (Csv1)contig : 13,856
reads : 206,813
singlets :
Citrus trifoliata Unigene version 1.0 (Ctv1)reads : 61,874
singlets :
contig : 6,884