Data Overview

 
 Genes : 206474 mRNAs
SourceNumber of mRNAs
Ca. L. solanacearum CLso-ZC1 genome0
Ca. L. americanus Sao Paulo genome0
Ca. L. asiaticus gxpsy genome0
Citrus sinensis genome v1.0 (JGI)46147
Citrus clementina genome v1.0 (JGI)33929
Ca. L. asiaticus psy62 genome0
L. crescens BT-0 genome0
Citrus sinensis genome v1.1 (JGI)46147
Citrus clementina genome v0.9 (JGI)35976
Ca. L. africanus PTSAPSY genome0
Citrus sinensis genome v2.0 (HZAU)44275
Ca. L. asiaticus A4 genome0
L. crescens BT-1 genome0
Ca. L. asiaticus Ishi-1 genome0
 
 Genomes
 
 Germplasm : 1352 germplasm
 
 Citrus amblycarpa : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus aurantifolia : 9
Germplasm TypeNumber of germplasm
cultivar7
breeding_research_material2
 
 Citrus aurantiifolia : 25
Germplasm TypeNumber of germplasm
wild_unimproved18
cultivar7
 
 Citrus aurantium : 85
Germplasm TypeNumber of germplasm
cultivar63
wild_unimproved19
breeding_research_material3
 
 Citrus bergamia : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus celebica : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus clementina : 12
Germplasm TypeNumber of germplasm
cultivar8
breeding_research_material3
population1
 
 Citrus deliciosa : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus depressa : 2
Germplasm TypeNumber of germplasm
wild_unimproved1
cultivar1
 
 Citrus grandis : 58
Germplasm TypeNumber of germplasm
cultivar52
population3
breeding_research_material3
 
 Citrus hassaku : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus hongheensis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus hybrid : 4
Germplasm TypeNumber of germplasm
wild_unimproved3
cultivar1
 
 Citrus hystrix : 5
Germplasm TypeNumber of germplasm
cultivar4
wild_unimproved1
 
 Citrus ichangensis : 4
Germplasm TypeNumber of germplasm
cultivar4
 
 Citrus indica : 3
Germplasm TypeNumber of germplasm
breeding_research_material1
cultivar1
wild_unimproved1
 
 Citrus iyo : 2
Germplasm TypeNumber of germplasm
cultivar1
breeding_research_material1
 
 Citrus jambhiri : 4
Germplasm TypeNumber of germplasm
cultivar3
breeding_research_material1
 
 Citrus junos : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus kinokuni : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus latifolia : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus latipes : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus limettioides : 5
Germplasm TypeNumber of germplasm
cultivar3
breeding_research_material2
 
 Citrus limon : 75
Germplasm TypeNumber of germplasm
cultivar51
wild_unimproved23
breeding_research_material1
 
 Citrus limonia : 18
Germplasm TypeNumber of germplasm
cultivar18
 
 Citrus limonimedica : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus lycopersicaformis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus macrophylla : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus macroptera : 1
Germplasm TypeNumber of germplasm
breeding_research_material1
 
 Citrus madurensis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus maxima : 72
Germplasm TypeNumber of germplasm
wild_unimproved46
cultivar24
breeding_research_material2
 
 Citrus medica : 54
Germplasm TypeNumber of germplasm
breeding_research_material20
wild_unimproved19
cultivar15
 
 Citrus meyeri : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus micrantha : 3
Germplasm TypeNumber of germplasm
cultivar3
 
 Citrus mitis : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus natsudaidai : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus nobilis : 5
Germplasm TypeNumber of germplasm
cultivar4
wild_unimproved1
 
 Citrus oto : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citrus paradisi : 57
Germplasm TypeNumber of germplasm
cultivar53
wild_unimproved2
breeding_research_material2
 
 Citrus reshni : 3
Germplasm TypeNumber of germplasm
breeding_research_material2
cultivar1
 
 Citrus reticulata : 216
Germplasm TypeNumber of germplasm
cultivar150
wild_unimproved47
breeding_research_material16
population3
 
 Citrus sinensis : 219
Germplasm TypeNumber of germplasm
cultivar195
breeding_research_material20
wild_unimproved3
population1
 
 Citrus spp. : 312
Germplasm TypeNumber of germplasm
cultivar118
breeding_research_material96
population89
wild_unimproved9
 
 Citrus sudachi : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus sunki : 5
Germplasm TypeNumber of germplasm
cultivar5
 
 Citrus tachibana : 4
Germplasm TypeNumber of germplasm
cultivar4
 
 Citrus taiwanica : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus tamurana : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus tangerina : 2
Germplasm TypeNumber of germplasm
cultivar2
 
 Citrus tankan : 1
Germplasm TypeNumber of germplasm
wild_unimproved1
 
 Citrus temple : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Citrus trifoliata : 2
Germplasm TypeNumber of germplasm
cultivar1
breeding_research_material1
 
 Citrus unshiu : 17
Germplasm TypeNumber of germplasm
cultivar14
breeding_research_material3
 
 Citrus volkameriana : 4
Germplasm TypeNumber of germplasm
cultivar3
population1
 
 Citrus webberi : 1
Germplasm TypeNumber of germplasm
cultivar1
 
 Poncirus trifoliata : 28
Germplasm TypeNumber of germplasm
cultivar11
wild_unimproved7
population6
breeding_research_material4
 
 Maps : 63 maps
 
 Citrus clementina : 3
Map TypeNumber of maps
genetic3
 
 Citrus grandis : 9
Map TypeNumber of maps
genetic6
physical3
 
 Citrus reshni : 3
Map TypeNumber of maps
Genetic3
 
 Citrus reticulata : 3
Map TypeNumber of maps
genetic2
physical1
 
 Citrus sinensis : 2
Map TypeNumber of maps
genetic2
 
 Citrus spp. : 35
Map TypeNumber of maps
genetic31
Genetic4
 
 Citrus volkameriana : 1
Map TypeNumber of maps
genetic1
 
 Poncirus trifoliata : 7
Map TypeNumber of maps
genetic4
Genetic3
 
 Markers : 42238 markers
 
 Citrus aurantifolia : 15
Marker TypeNumber of markers
PCR Marker7
PCR Primer7
genetic markers1
 
 Citrus aurantiifolia : 7
Marker TypeNumber of markers
PCR Primer7
 
 Citrus aurantium : 47
Marker TypeNumber of markers
SSR17
EST13
genetic marker5
SRAP5
RAPD4
IRAP3
 
 Citrus clementina : 1728
Marker TypeNumber of markers
SNP1529
SSR100
Indel38
genetic marker27
Gene marker10
PCR Primer8
gene marker8
AFLP8
 
 Citrus grandis : 7740
Marker TypeNumber of markers
SSR6157
SNP1583
 
 Citrus iyo : 15
Marker TypeNumber of markers
PCR Primer15
 
 Citrus jambhiri : 4
Marker TypeNumber of markers
genetic marker3
PCR Primer1
 
 Citrus japonica : 10
Marker TypeNumber of markers
genetic marker10
 
 Citrus junos : 10
Marker TypeNumber of markers
PCR Primer10
 
 Citrus limon : 7
Marker TypeNumber of markers
genetic markers7
 
 Citrus limonia : 1
Marker TypeNumber of markers
gene marker1
 
 Citrus maxima : 5
Marker TypeNumber of markers
Gene marker5
 
 Citrus medica : 34
Marker TypeNumber of markers
genetic marker28
EST6
 
 Citrus paradisi : 31
Marker TypeNumber of markers
PCR Primer25
genetic marker4
gene marker2
 
 Citrus reshni : 17
Marker TypeNumber of markers
SSR17
 
 Citrus reticulata : 595
Marker TypeNumber of markers
SNP399
SSR110
VNTR38
PCR Primer24
PCR Primers22
SCAR2
 
 Citrus sinensis : 1262
Marker TypeNumber of markers
SSR717
PCR Primer163
RNA primer105
gene marker96
genetic marker40
genetic markers37
PCR marker30
PCR primer17
cDNA-AFLP13
Gene marker13
RAPD13
gene markers11
Gene markers6
gene primer1
 
 Citrus spp. : 30535
Marker TypeNumber of markers
SNP26440
SSR1029
DArTseq648
CAPS523
RAPD506
SRAP274
ISSR134
genetic marker133
fAFLP119
PCR Primer91
RFLP88
EST-SSR66
STS57
Gene marker51
SCAR48
IRAP46
EST-STMS39
Indel29
Genetic marker26
SNP;CAPS25
gene marker21
CAPS;SNP21
VNTR16
RBC14
genetic primer12
InDel12
PCR9
SCoT9
LAMP marker8
gene markers7
POPG6
PCR-RFLP6
RACE Primer4
SSAP4
RGC3
STS;SNP3
genetic markers3
STMS2
SNP;STS1
isozyme1
SNP*1
 
 Citrus unshiu : 26
Marker TypeNumber of markers
gene marker8
PCR marker7
genetic markers5
Gene marker3
PCR Primer2
SSR1
 
 Citrus volkameriana : 17
Marker TypeNumber of markers
genetic marker8
RAPD7
SSR2
 
 Poncirus trifoliata : 132
Marker TypeNumber of markers
PCR markers49
PCR Primer27
Genetic marker11
genetic marker9
gene marker8
SSR6
EST5
RAPD4
SRAP3
gene markers3
Gene Primer3
Gene marker2
IRAP1
PCR1
 
 QTL/MTL : 479 QTLs and 0 MTLs for 180 agronomic traits
Trait CategoryNumber of QTLsNumber of MTLs
1,3-Pentadiene Content20
7-epi-alpha-Selinene Content30
9-cis-violaxanthin50
Acidity/soluble solid10
Acidity (total titratable acidity)50
Allo-ocimene isomer Content20
All-trans-violaxanthin60
Alpha-Selinene Content20
Alpha-Terpinene Content20
Anther Number10
Beta-phellandrene Content40
Calamenene Content20
Citronellyl Acetate content50
Citrus Tristeza Virus Resistance70
cold tolerance80
Control Fine Root Dry Weight30
Control Fine Root Dry Weight/ Control Total Weight Chloride20
Control Fine Root Na Accumulation20
Control Fine Roots Chloride/Potassium Accumulation Percentage10
Control Leaf Chloride10
Control Leaf Chloride/Potassium Accumulation Percentage10
Control Leaf (Cl)10
Control Leaf Gram per Meter Dry Weight30
Control Leaf Potassium Accumulation Percentage20
Control Net Growth70
Control Percentage Fine Roots Chloride10
Control Percentage Fine Roots Sodium30
Control Percentage Leaf Chloride20
Control Percentage Leaf Sodium10
Control Percentage Stem Chloride10
Control Percentage Stem Sodium20
Control Percentage Structural Roots Chloride40
Control Percentage Structural Roots Sodium20
Control Stem Chloride10
Control Stem Dry Weight30
Control Stem Gram per Meter Dry Weight30
Control Stem Potassium Accumulation Percentage10
Control Stem Sodium40
Control Structural Root (Cl)10
Control Structural Root Dry Weight10
Control Structural Root Gram per Meter Dry Weight60
Control Structural Roots Chloride20
Control Structural Roots Potassium Accumulation Percentage10
Control Structural Roots Sodium20
Control Total Dry Weight20
Control Total Growth50
Control Total Plant Chloride30
Control Total Plant Chloride/Sodium20
Control Total Plant Sodium30
Control Whole Plant Chloride/Potassium10
Control Whole Plant (Cl)10
Control Whole Plant (Cl/Na)10
Delta-Cadinene Content30
Diameter (fruit10
Diameter (fruit)30
Duration of juvenility period40
Ease of peeling10
Ethanol Content50
Ethyl Acetate Content20
Flavedo color space value a80
Flavedo color space value a/ b80
Flavedo color space value b80
Flavedo color space value L60
Fruit Segment10
Fruit weight60
Gamma-Terpinene Content20
Height (fruit)20
Height/width ratio10
Heptanal Content20
Juice color space value a40
Juice color space value a/b50
Juice color space value b40
Juice color space value L10
Juice content20
Juice percentage10
Leaf Length10
Leaf Width20
Lutein40
Neryl acetate Content30
Number of fruits per box10
Number of seeds40
Octanal Content20
Petal Length10
Petal Number10
Petal Width10
Phytoene20
Phytophthora Gummosis Resistance30
p-Menth-1-en-9-ol acetate Content20
Premnaspirodiene Content30
RI1495 Content40
RI1549 Content20
Saline Accumulation Leaf (Na)30
Saline Accumulation Stem (Na)30
Saline Accumulation Structural Root (Na)10
Salinized/Control Fine Root Gram per Meter Dry Weight10
Salinized/Control Leaf Dry Weight20
Salinized/Control Leaf Gram per Meter Dry Weight50
Salinized/Control Net Growth30
Salinized/Control Net Weight/ Salinized Percentage Structural Root Sodium10
Salinized/Control Stem Dry Weight20
Salinized/ Control Stem Gram per Meter Dry Weight20
Salinized/ Control Structural Roots Gram per Meter Dry Weight20
Salinized/Control Total Dry Weight10
Salinized/Control Total Gram per Meter Dry Weight10
Salinized/Control Total Growth10
Salinized Fine Root Dry Weight10
Salinized Fine Roots Chloride30
Salinized Fine Roots Chloride/Potassium Accumulation Percentage10
Salinized Fine Roots Gram per Meter Dry Weight30
Salinized Fine Roots Gram per Meter/Salinized Total Weight Chloride10
Salinized Fine Roots grams per Meter Dry Weight/Salinized Percentage Leaf Chloride20
Salinized Fine Roots Grams per Meter Dry Weight/ Salinized Total Weight Sodium10
Salinized Fine Roots Sodium10
Salinized Fine Roots Sodium/Potassium Accumulation Percentage40
Salinized Leaf Chloride20
Salinized Leaf Chloride/ Potassium20
Salinized Leaf (Cl)20
Salinized Leaf Dry Weight20
Salinized Leaf Gram per Meter Dry Weight40
Salinized Leaf (Na)30
Salinized Leaf Potassium10
Salinized Leaf Potassium Accumulation20
Salinized Leaf Sodium40
Salinized Leaf Sodium/Potassium Accumulation30
Salinized Leaf Sodium/Potassium Accumulation Percentage20
Salinized Net Growth30
Salinized Percentage Fine Roots Sodium10
Salinized Percentage Leaf Chloride10
Salinized Percentage Leaf Sodium30
Salinized Percentage Stem Sodium30
Salinized Percentage Structural Roots Chloride10
Salinized Percentage Structural Roots Sodium40
Salinized Stem Chloride20
Salinized Stem Chloride/Potassium Accumulation Percentage10
Salinized Stem (Cl)10
Salinized Stem Dry Weight40
Salinized Stem Gram per Meter Dry Weight40
Salinized Stem Sodium/Potassium Accumulation Percentage20
Salinized Structural Root Dry Weight30
Salinized Structural Root Grams per Meter/ Salinized Structural Root Sodium30
Salinized Structural Root (Na)20
Salinized Structural Roots Chloride10
Salinized Structural Roots Chloride/ Potassium10
Salinized Structural Roots Gram per Meter Dry Weight10
Salinized Structural Roots Sodium40
Salinized Structural Roots Sodium/Potassium Accumulation20
Salinized Structural Roots Sodium/Potassium Accumulation Percentage10
Salinized Total Dry Weight10
Salinized Total Gram per Meter Dry Weight70
Salinized Total Growth60
Salinized Total Plant Chloride40
Salinized Total Plant Chloride/ Sodium40
Salinized Total Plant Sodium10
Salinized Whole Plant Chloride/Potassium10
Salinized Whole Plant (Cl)10
Salinized Whole Plant (Cl/Na)30
Salinized Whole Plant Gram per Meter Dry Weight/ Salinized Structural Root Sodium20
Salinized Whole Plant Sodium/Potassium40
Seed Embryony30
Segments per fruit10
Soluble solids content/ titratable acidity30
Soluble solid (total soluble solids)60
Spirolepechinene Content40
Technological index50
Total Carotenoid130
Total Violaxanthin50
total ζ-carotene30
Tree Canopy Width20
Tree Growth10
Tree Height20
Tree Vigor10
Trunk Diameter20
Trunk Diameter Growth20
Valencene Content40
zeaxanthin20
β-carotene20
β-cryptoxanthin30
ζ-carotene120
ζ-carotene230
ζ-carotene330
 
 Species : 55 species
GenusSpecies
Citrusamblycarpa, aurantifolia, aurantiifolia, aurantium, bergamia, celebica, clementina, deliciosa, depressa, grandis, hassaku, hongheensis, hybrid, hystrix, ichangensis, indica, iyo, jambhiri, junos, kinokuni, latifolia, latipes, limettioides, limon, limonia, limonimedica, lycopersicaformis, macrophylla, macroptera, madurensis, maxima, medica, meyeri, micrantha, mitis, natsudaidai, nobilis, oto, paradisi, reshni, reticulata, sinensis, spp., sudachi, sunki, tachibana, taiwanica, tamurana, tangerina, tankan, temple, trifoliata, unshiu, volkameriana, webberi
Poncirustrifoliata
 
 Transcripts
Analysis NameNumber of features
Citrus clementina Unigene version 1.0 (Ccv1)reads : 117,758
contig : 15,548
singlets :
Citrus sinensis CGD RefTrans V1Reference Transcriptomes : 33111
Citrus sinensis Unigene version 1.0 (Csv1)reads : 206,813
contig : 13,856
singlets :
Citrus trifoliata Unigene version 1.0 (Ctv1)reads : 61,874
contig : 6,884
singlets :