Citrus maxima (C. grandis) genome v1.0

Overview
Analysis NameCitrus maxima (C. grandis) genome v1.0
Methodwhole genome shotgun sequencing, Illumina and PacBio (Assembly with HGAP, SMRT Analysis v2.3.0)
SourceHuazhong Ag. Univ.
Date performed2017-04-10

 

About the assembly

For this genome, please cite Wang et al, Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction.  This data was downloaded from the Citrus sinensis Annotation Project website. This genome has been anchored to the C. grandis linkage map.   Please see the links to the left to view the genome in JBrowse.

Assembly size (anchored only) 302 Mb
Number of anchored scaffolds 9
Predicted transcripts 42,886
Properties
Additional information about this analysis:
Property NameValue
Analysis Typewhole_genome
JBrowse URLhttps://www.citrusgenomedb.org/jbrowse/index.html?data=data%2FCmaxima_Hzau_v1.0&loc=
Download

To download the genome assembly and annotation files, please visit the CGD FTP.

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.