JBrowse

Click on the genome version or strain name on the tables below to open the JBrowse genome viewer.  Use the links in the "More Information" column to visit the source page, and find more info about the sequence in CGD.  For information on how to use JBrowse, please see the JBrowse page of the User Manual.

 

Citrus Genomes Genome Version More Information
Clementine    

Citrus clementina cv. Clemenules

v1.0

v0.9

CGD | JGI | Aligned SRA data: Roose, Wu

CGD 

Sweet Orange    

Citrus sinensis cv. Ridge Pineapple

v1.1

v1.0

CGD | JGI

CGD 

Citrus sinensis cv. Valencia, phased diploid genome

v1.0 - DVS_A

v1.0 - DVS_B

CGD | NCBI

CGD | NCBI

Citrus sinensis cv. Valencia

v2.0

v1.0

CGD | Aligned methylation data

CGD

Citrus sinensis Di-Haploid Sweet Orange (DHSO)

v3.0 CGD

Citrus sinensis cv. Newhall

v1.0 CGD
Lemon    

Citrus limon cv. Eureka

v1.0 - Haploid CGD

Citrus limon L. Burm. f.

v1.0 - Primary

v1.0 - Alternative

CGD

CGD

Round Lime    

Citrus australis 

v1.0 CGD
Pummelo    

Citrus maxima cv. Cupi Majiayou

v1.0 CGD

Citrus maxima cv. Wanbaiyou (C. grandis)

v1.0 CGD
Hardy Orange    

Poncirus trifoliata acc. ZK8

v1.0 CGD

Poncirus trifoliata acc. DPI 50-7

v1.3.1 CGD | JGI
Hongkong Kumquat    

Fortunella hindsii acc. S3y‐45

v2.0

v1.0

CGD

CGD

Papeda    

Citrus ichangensis  cv. XJC (C. cavaleriei)

v1.0 CGD
Citron    

Citrus medica cv. XZ

v1.0 CGD
Chinese Box Orange    

Atalantia buxifolia cv. HKC

v1.0 CGD
Mandarin    

Citrus reticulata cv. WM01

v1.0 CGD

 

Liberibacter Genomes Strain More Information
Ca. Liberibacter asiaticus

gxpsy

psy62

A4

Ishi-1

JXGC

CGDNCBI

CGD NCBI

CGD NCBI

CGD NCBI

CGD | NCBI

Ca. Liberibacter americanus Sao Paulo CGD NCBI
Ca. Liberibacter africanus PTSAPSY CGDNCBI
Liberibacter crescens

BT-1

BT-0

CGD NCBI

CGD NCBI

Ca. Liberibacter solanacearum CLso-ZC1 CGD NCBI