Citrus mangshanensis cv. MSYG genome v1.0

Overview
Analysis NameCitrus mangshanensis cv. MSYG genome v1.0
MethodIllumina, PacBio, Nanopore (Assembly with SMARTdenovo, miniasm, NextDenovo)
SourceHuazhong Agriculture University
Date performed2023-12-21

 

About the assembly

For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits.  This data was originally downloaded from the Citrus Pan-genome to Breeding Database.  This data is also on NCBI under BioProject PRJNA782799 and the assembly accession number is GCA_030449895.1.  The listed BioSample isolate designation is MSYG.

Assembly metrics

Assembly size 371 Mb
Number of scaffolds 376
N50 3,582,878 bp
Predicted transcripts 45,056
Annotated genes 28,131
Assembly BUSCO score (embryophyta_odb10) 99.0%
Annotation BUSCO score (embryophyta_odb10) 96.5%