Fortunella hindsii genome v1.0

Analysis NameFortunella hindsii genome v1.0
MethodPacBio Sequel, 10x Genomics Chromium (Assembly with Mecat)
Source Huazhong Ag. Univ.
Date performed2020-12-18


About the assembly

For this genome, please cite Zhu et al, Genome sequencing and CRISPR/Cas9 gene editing of an early flowering mini citrus (Fortunella hindsii).  This data was downloaded from the Citrus sinensis Annotation Project website.  Please see the links to the left to view the genome in JBrowse.

Size of assembled scaffolds 373.6 Mb
Number of contigs 1,226
Contig N50 2,209,464 bp
Scaffold N50 5,155,544 bp
Annotated genes 32,257


Additional information about this analysis:
Property NameValue
Analysis Typewhole_genome

To download the genome assembly and annotation files, please visit the Citrus sinensis Annotation Project webpage.  

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.