Fortunella hindsii genome v1.0

Analysis NameFortunella hindsii genome v1.0
MethodPacBio Sequel, 10x Genomics Chromium (Assembly with Mecat)
SourceHuazhong Ag. Univ.
Date performed2020-12-18


About the assembly

For this genome, please cite Zhu et al, Genome sequencing and CRISPR/Cas9 gene editing of an early flowering mini citrus (Fortunella hindsii).  This data was downloaded from the Citrus sinensis Annotation Project website.  This data is also on NCBI under BioProject PRJNA487160, listed BioSample cultivar designation is Hongkong kumquat.  Manuscript identifies accession S3y-45 as the sample that was sequenced.

Assembly metrics

Assembly size 374 Mb
Number of scaffolds 1,226
N50 2,209,464 bp
Predicted transcripts 52,686
Annotated genes 32,257
Assembly BUSCO score (embryophyta_odb10) 98.8%
Annotation BUSCO score (embryophyta_odb10) 96.6%



To download the genome assembly and annotation files, please visit the CGD Data Repository.

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.