Citrus medica genome v1.0

Overview
Analysis NameCitrus medica genome v1.0
Methodwhole genome shotgun, Illumina (Assembly with SOAPdenovo and QUAKE)
SourceHuazhong Ag. Univ.
Date performed2017-04-10

 

About the assembly

For this genome, please cite Wang et al, Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction.  This data was downloaded from the Citrus sinensis Annotation Project website.  Please see the links to the left to view the genome in JBrowse.

Size of assembled scaffolds 405 Mb
Number of scaffolds (>300 bp) 32,731
Scaffold N50 367,043 bp
Predicted transcripts 47,506
Annotated genes 32,579
Properties
Additional information about this analysis:
Property NameValue
Analysis Typewhole_genome
JBrowse URLhttps://www.citrusgenomedb.org/jbrowse/index.html?data=data%2FCmedica_Hzau_v1.0&loc=
Download

To download the genome assembly and annotation files, please visit the CGD FTP.  

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.