Citrus limon L. Burm f. genome v1.0 - Primary

Analysis NameCitrus limon L. Burm f. genome v1.0 - Primary
MethodIllumina and Oxford Nanopore (Assembly with Falcon, Polca)
SourceEdmund Mach Foundation & University of Catania
Date performed2021-12-07


CGD Accession: CGD21001

Citation: Di Guardo M, Moretto M, Moser M, Catalano C, Troggio M, Deng Z, Cestaro A, Caruso M, Distefano G, La Malfa S, Bianco L, Gentile A. The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.). Tree Genetics & Genomes. 2021 Nov 09; 17:46.


Primary Assembly Metrics

Number of scaffolds 811
Total bases 312,798,465
N50 27,512,417 bp
Predicted transcripts 35,020
Annotated genes 32,894
Assembly BUSCO score (embryophtya_odb10) 96.0%
Annotation BUSCO score (embryophyta_odb10) 71.4%

Below are links to data files related to this genome assembly.  These files can also be accessed and downloaded from the CGD data repository.  This page has links to the files that are most commonly downloaded.

Genome Assembly, C. limon v1.0, primary:

Homology Analysis Results:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.