Citrus limon L. Burm f. genome v1.0 - Alternative

Overview
Analysis NameCitrus limon L. Burm f. genome v1.0 - Alternative
MethodOxford Nanopore, Illumina (Assembly with Falcon, Polca)
SourceEdmund Mach Foundation & University of Catania
Date performed2021-12-07

 

CGD Accession: CGD21001

Citation: Di Guardo M, Moretto M, Moser M, Catalano C, Troggio M, Deng Z, Cestaro A, Caruso M, Distefano G, La Malfa S, Bianco L, Gentile A. The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.). Tree Genetics & Genomes. 2021 Nov 09; 17:46.

 

Alternative Assembly Metrics

Number of scaffolds 799
Total bases 324,746,294
N50 30,652,384
Assembly BUSCO score (embryophtya_odb10) 94.8%
Annotation BUSCO score (embryophtya_odb10) 69.9%
Properties
Additional information about this analysis:
Property NameValue
Analysis Typewhole_genome
JBrowse URLhttps://www.citrusgenomedb.org/jbrowse/index.html?data=data%2FClimon_Alt_v1.0_f&loc=
Downloads

Below are links to data files related to this genome assembly.  These files can also be accessed and downloaded from the CGD data repository.  This page has links to the files that are most commonly downloaded.

Genome Assembly, C. limon v1.0, alternative:

Homology Analysis Results:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.