Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)

Analysis NameCitrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)
MethodPacbio, Illumina (Assembly with HGAP, Quiver, Pilon, SSPACE-STANDARD)
SourceHuazhong Agriculture University
Date performed2023-02-14


About the assembly

For this genome, please cite Wang et al, Somatic variations led to the selection of acidic and acidless orange cultivars.  This data was originally downloaded from the Citrus sinensis Annotation Project website.  Please note that this genome corresponds to version 3.0 on the current HZAU website and is refered to as v4.0 in the manuscript. This data is also on NCBI under BioProject PRJNA347609 and the assembly accession number is GCA_018105775.1.  The listed BioSample isolate designation is HZAU_DHSO_2021.

Assembly metrics

Assembly size 337 Mb
Number of scaffolds 10
N50 32,431,066 bp
Predicted transcripts 49,567
Annotated genes 29,875
Assembly BUSCO score (embryophyta_odb10) 99.0%
Annotation BUSCO score (embryophyta_odb10) 96.6%



To download the genome assembly and annotation files, please visit the CGD data repository.