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Overview
| Analysis Name | Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU) |
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| Method | Pacbio, Illumina (Assembly with HGAP, Quiver, Pilon, SSPACE-STANDARD) |
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| Source | Huazhong Agriculture University |
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| Date performed | 2023-02-14 |
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About the assembly
For this genome, please cite Wang et al, Somatic variations led to the selection of acidic and acidless orange cultivars. This data was originally downloaded from the Citrus sinensis Annotation Project website. Please note that this genome corresponds to version 3.0 on the current HZAU website and is refered to as v4.0 in the manuscript. This data is also on NCBI under BioProject PRJNA347609 and the assembly accession number is GCA_018105775.1. The listed BioSample isolate designation is HZAU_DHSO_2021.
Assembly metrics
| Assembly size |
337 Mb |
| Number of scaffolds |
10 |
| N50 |
32,431,066 bp |
| Predicted transcripts |
49,567 |
| Annotated genes |
29,875 |
| Assembly BUSCO score (embryophyta_odb10) |
99.0% |
| Annotation BUSCO score (embryophyta_odb10) |
96.6% |
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