Citrus sinensis Valencia genome v2.0 (HZAU)

Analysis NameCitrus sinensis Valencia genome v2.0 (HZAU)
MethodPacbio, 10x Genomics, Illumina (Assembly with NGMLR, Long Ranger, BWA)
SourceHuazhong Agriculture University
Date performed2021-07-02


About the assembly

For this genome, please cite Wang et al, Somatic variations led to the selection of acidic and acidless orange cultivars.  This data was originally downloaded from the Citrus sinensis Annotation Project website.  Please note that this genome corresponds to version 2.0 on the current HZAU website and is refered to as v3.0 in the manuscript. This data is also on NCBI under BioProject PRJNA347609 and the assembly accession number is GCA_018104345.1.  The listed BioSample cultivar designation is Valencia.

Assembly metrics

Assembly size 338 Mb
Number of scaffolds 10
N50 32,636,375 bp
Predicted transcripts 44,853
Annotated genes 29,138
Assembly BUSCO score (embryophyta_odb10) 98.6%
Annotation BUSCO score (embryophyta_odb10) 96.1%



To download the genome assembly and annotation files, please see the CGD data repository.