|
|
Overview
| Analysis Name | Citrus sinensis Valencia genome v2.0 (HZAU) |
|---|
| Method | Pacbio, 10x Genomics, Illumina (Assembly with NGMLR, Long Ranger, BWA) |
|---|
| Source | Huazhong Agriculture University |
|---|
| Date performed | 2021-07-02 |
|---|
About the assembly
For this genome, please cite Wang et al, Somatic variations led to the selection of acidic and acidless orange cultivars. This data was originally downloaded from the Citrus sinensis Annotation Project website. Please note that this genome corresponds to version 2.0 on the current HZAU website and is refered to as v3.0 in the manuscript. This data is also on NCBI under BioProject PRJNA347609 and the assembly accession number is GCA_018104345.1. The listed BioSample cultivar designation is Valencia.
Assembly metrics
| Assembly size |
338 Mb |
| Number of scaffolds |
10 |
| N50 |
32,636,375 bp |
| Predicted transcripts |
44,853 |
| Annotated genes |
29,138 |
| Assembly BUSCO score (embryophyta_odb10) |
98.6% |
| Annotation BUSCO score (embryophyta_odb10) |
96.1% |
|
