Clausena lansium cv. HP genome v1.0

Overview
Analysis NameClausena lansium cv. HP genome v1.0
MethodPacBio and Nanopore (Assembly with SMARTdenovo, miniasm)
SourceHuazhong Agriculture University
Date performed2024-01-22

 

About the assembly

For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits.  This data was originally downloaded from the Citrus Pan-genome to Breeding Database.  This data is also on NCBI under BioProject PRJNA782352 and the assembly accession number is GCA_030449835.1.  The listed BioSample isolate designation is HP.

Assembly metrics

Assembly size 313 Mb
Number of scaffolds 401
N50 12,675,411 bp
Predicted transcripts 47,277
Annotated genes 29,033
Assembly BUSCO score (embryophyta_odb10) 99.0%
Annotation BUSCO score (embryophyta_odb10) 96.0%