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Overview
| Analysis Name | Citrus sinensis cv. Neixiu genome v1.0 |
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| Method | Illumina Novaseq 6000, PacBio Sequel II, Hi-C (Assembled with SOAP v2.21, Hifiasm v0.16, LACHESIS) |
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| Source | GCA_038048705.1 |
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| Date performed | 2024-05-30 |
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About the assembly
For this genome, please cite Yang L, Deng H, Wang M, Li S, Wang W, Yang H, Pang C, Zhong Q, Sun Y, Hong L. A high-quality chromosome-scale genome assembly of blood orange, an important pigmented sweet orange variety. Scientific data. 2024 May 06; 11(1):460. The assembly was originally downloaded from NCBI and the annotation from Figshare.
Assembly metrics
| Assembly size |
335 Mb |
| Number of scaffolds |
85 |
| N50 |
30,600,000 bp |
| Predicted transcripts |
41,742 |
| Annotated genes |
30,097 |
| Assembly BUSCO score (embryophyta_odb10) |
98.2% |
| Annotation BUSCO score (embryophyta_odb10) |
97.1% |
Assembly
The Citrus sinensis cv. Neixiu genome v1.0 assembly file is available in FASTA format.
Downloads
Gene Predictions
The Citrus sinensis cv. Neixiu v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
Functional Analysis
Functional annotation for the Citrus sinensis cv. Neixiu genome v1.0 are available for download below. The Citrus sinensis genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
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