Atalantia buxifolia genome v1.0

Analysis NameAtalantia buxifolia genome v1.0
MethodWGS sequencing, Illumina (Assembly with SOAPdenovo and QUAKE)
SourceHuazhong Ag. Univ.
Date performed2017-04-10


About the assembly

For this genome, please cite Wang et al, Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction.  This data was downloaded from the Citrus sinensis Annotation Project website.  Please see the links to the left to view the genome in JBrowse.  This data is also on NCBI under BioProject PRJNA327148, listed BioSample cultivar designation is HKC.

Assembly metrics

Assembly size 316 Mb
Number of scaffolds 25,600
N50 1,073,988 bp
Predicted transcripts 65,499
Annotated genes 28,412
Assembly BUSCO score (embryophyta_odb10) 99.0%
Annotation BUSCO score (embryophyta_odb10) 96.2%

To download the genome assembly and annotation files, please visit the CGD data repository.

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab.  Results were parsed into an Excel format.