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Overview
| Analysis Name | Citrus changshanensis cv. Huyou genome v1.0 |
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| Method | PacBio, Illumina, Hi-C (Assembled with Hifiasm v0.19.6) |
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| Source | GWHEQVQ00000000.1 |
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| Date performed | 2024-06-25 |
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About the assembly
For this genome, please cite Miao C, Wu Y, Wang L, Zhao S, Grierson D, Xu C, Chen W, Chen K. Haplotype-resolved chromosome-level genome assembly of Huyou (Citrus changshanensis). Scientific data. 2024 Jun 07; 11(1):605. This data was originally downloaded from Genome Warehouse.
Assembly metrics
| Assembly size |
340 Mb |
| Number of scaffolds |
31 |
| N50 |
30,365,619 bp |
| Predicted transcripts |
29,754 |
| Annotated genes |
29,754 |
| Assembly BUSCO score (embryophyta_odb10) |
98.5% |
| Annotation BUSCO score (embryophyta_odb10) |
94.6% |
Assembly
The Citrus changshanensis cv. Huyou genome v1.0 assembly file is available in FASTA format.
Downloads
| Chromosomes (HAP1 FASTA file) |
Ccha_Huyou_v1.cch.fasta.gz |
Gene Predictions
The Citrus changshanensis cv. Huyou v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
Functional Analysis
Functional annotation for the Citrus changshanensis cv. Huyou genome v1.0 are available for download below. The Citrus changshanensis genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
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