Citrus sinensis cv. Valencia DVS_A genome v1.0

Analysis NameCitrus sinensis cv. Valencia DVS_A genome v1.0
MethodPacBio (Assembly with MECAT2, CANU, pb-falcon v2.24)
SourceNCBI, GCA_022201045.1
Date performed2023-04-12

About the assembly

For this genome, please cite Wu et al, A chromosome-level phased genome enabling allele-level studies in sweet orange: a case study on citrus Huanglongbing tolerance.  This data was downloaded from the NCBI website, genome accession number GCA_022201045.1.  This data is also on NCBI under BioProject PRJNA736174.  The listed BioSample isolate designation is Valencia sweet orange.

This is one half of the phased diploid assembly and is primarily mandarin-origin (97.1% mandarin-origin, 2.9% pummelo-origin).

Assembly metrics

Assembly size 299 Mb
Number of scaffolds 9
N50 32,942,340 bp
Predicted transcripts 80,451
Annotated genes 27,807
Assembly BUSCO score (embryophyta_odb10) 99.0%
Annotation BUSCO score (embryophyta_odb10) 99.2%

To download the genome assembly and annotation files, please visit the CGD data repository.