Citrus ichangensis cv. ZGYCC v2.0 genome

Overview
Analysis NameCitrus ichangensis cv. ZGYCC v2.0 genome
MethodPacBio, Nanopore, Illumina (Assembly with SMARTdenovo, miniasm, NextDenovo)
SourceHuazhong Agriculture University
Date performed2023-12-21

 

About the assembly

For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits.  This data was originally downloaded from the Citrus Pan-genome to Breeding Database.  This data is also on NCBI under BioProject PRJNA321657 and the assembly accession number is GCA_030448935.1.  The listed BioSample isolate designation is ZGYCC.

Assembly metrics

Assembly size 365 Mb
Number of scaffolds 506
N50 5,250,823 bp
Predicted transcripts 47,961
Annotated genes 29,451
Assembly BUSCO score (embryophyta_odb10) 99.0%
Annotation BUSCO score (embryophyta_odb10) 96.5%