Citrus hongheensis cv. HH genome v1.0

Overview
Analysis NameCitrus hongheensis cv. HH genome v1.0
MethodNanopore, PacBio, Illumina (Assembly with SMARTdenovo, miniasm, NextDenovo)
SourceHuazhong Agriculture University
Date performed2023-12-21

 

About the assembly

For this genome, please cite Huang et al, Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits.  This data was originally downloaded from the Citrus Pan-genome to Breeding Database.  This data is also on NCBI under BioProject PRJNA783764 and the assembly accession number is GCA_030448925.1.  The listed BioSample isolate designation is HH.

Assembly metrics

Assembly size 355 Mb
Number of scaffolds 653
N50 2,606,256 bp
Predicted transcripts 47,000
Annotated genes 30,525
Assembly BUSCO score (embryophyta_odb10) 98.9%
Annotation BUSCO score (embryophyta_odb10) 96.2%