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Species
Citrus clementina
Citrus ichangensis
Citrus sinensis
Citrus reticulata
Citrus maxima
Citrus medica
Poncirus trifoliata
Atalantia buxifolia
Fortunella hindsii
Ca. Liberibacter asiaticus
Ca. Liberibacter africanus
Ca. Liberibacter americanus
others
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Nucleotide to Protein BLAST (blastx)
Request a New BLAST
Enter
Nucleotide
Query Sequence
Enter one or more queries in the top text box or use the browse button to upload a file from your local disk. The file may contain a single sequence or a list of sequences. In both cases, the data must be in
FASTA format
.
Show an Example Sequence
Enter FASTA sequence(s)
Or upload your own query FASTA:
Upload
The file should be a plain-text FASTA (.fasta, .fna, .fa, .fas) file. In other words, it cannot have formatting as is the case with MS Word (.doc, .docx) or Rich Text Format (.rtf). It cannot be greater than
2048MB
in size.
Don't forget to press the Upload button before attempting to submit your BLAST.
Choose Search Target
Choose from one of the
protein
BLAST databases listed below.
Protein
BLAST Databases:
SELECT a Dataset
C. clementina v0.9 genome (JGI) peptides
C. clementina v1.0 genome (JGI) peptides
C. sinensis v1.0 genome (JGI) peptides
C. sinensis v1.1 genome (JGI) peptides
C. sinensis v2.0 genome (HZAU) peptides
Ca. L. asiaticus A4 peptides
Ca. L. asiaticus Ishi-1 peptides
Ca. L. asiaticus JXGC peptides
Ca. L. asiaticus gxpsy peptides
Ca. L. asiaticus psy62 peptides
Ca. L. asiaticus-all strains peptides
Ca. L. africanus PTSAPSY peptides
Ca. L. americanus Sao Paulo peptides
Ca. L. solanacearum CLso-ZC1 peptides
Liberibacter-all strains peptides
L. crescens BT-0 peptides
L. crescens BT-1 peptides
L. crescens-all strains peptides
Atalantia buxifolia v1.0 genome (HZAU) peptides
C. ichangensis v1.0 genome (HZAU) peptides
C. maxima v1.0 genome (HZAU) peptides
C. medica v1.0 genome (HZAU) peptides
C. reticulata v1.0 genome (HZAU) peptides
Poncirus trifoliata v1.3.1 genome (JGI) peptides
Advanced Options
General parameters
Max target sequences:
10
50
100
250
500
1000
5000
10000
20000
e-Value (Expected Threshold)
Expected number of chance matches in a random model. This number should be give in a decimal format.
More Information
|
Expect value vedio tutorial
Word size:
3
6
Max matches in a query range
Scoring parameters
Matrix
PAM30
PAM70
PAM250
BLOSUM80
BLOSUM62
BLOSUM45
BLOSUM50
BLOSUM90
BLAST