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Species
Citrus australis
Citrus clementina
Citrus ichangensis
Citrus limon
Citrus maxima
Citrus medica
Citrus reticulata
Citrus sinensis
Poncirus trifoliata
Atalantia buxifolia
Fortunella hindsii
Ca. Liberibacter asiaticus
Ca. Liberibacter africanus
Ca. Liberibacter americanus
others
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Protein to Protein BLAST (blastp)
Request a New BLAST
Enter
Protein
Query Sequence
Enter one or more queries in the top text box or use the browse button to upload a file from your local disk. The file may contain a single sequence or a list of sequences. In both cases, the data must be in
FASTA format
.
Show an Example Sequence
Enter FASTA sequence(s)
Or upload your own query FASTA:
Upload
The file should be a plain-text FASTA (.fasta, .fna, .fa, .fas) file. In other words, it cannot have formatting as is the case with MS Word (.doc, .docx) or Rich Text Format (.rtf). It cannot be greater than
500MB
in size.
Don't forget to press the Upload button before attempting to submit your BLAST.
Choose Search Target
Choose from one of the
protein
BLAST databases listed below.
Protein
BLAST Databases:
SELECT a Dataset
C. australis v1.0 genome, peptides
C. clementina v0.9 genome (JGI) peptides
C. clementina v1.0 genome (JGI) peptides
C. ichangensis XJC v1.0 genome peptides
C. limon Eureka v1.0 genome proteins
C. limon v1.0 genome, alternative peptides
C. limon v1.0 genome, primary peptides
C. maxima Wanbaiyou v1.0 genome peptides
Citrus maxima Cupi Majiayou v1.0 proteins
C. medica XZ v1.0 genome peptides
C. reticulata WM01 v1.0 genome peptides
C. sinensis DHSO v3.0 genome peptides
C. sinensis Valencia DVS_A v1.0 genome peptides
C. sinensis Valencia DVS_B v1.0 genome peptides
C. sinensis Valencia v1.0 genome peptides
C. sinensis Valencia v2.0 genome peptides
C. sinensis v1.0 genome (JGI) peptides
C. sinensis v1.1 genome (JGI) peptides
Fortunella hindsii S3y-45 v1.0 genome peptides
Fortunella hindsii S3y-45 v2.0 proteins
Poncirus trifoliata DPI 50-7 v1.3.1 genome peptides
Poncirus trifoliata ZK8 genome peptides
Ca. L. asiaticus A4 peptides
Ca. L. asiaticus Ishi-1 peptides
Ca. L. asiaticus JXGC peptides
Ca. L. asiaticus gxpsy peptides
Ca. L. asiaticus psy62 peptides
Ca. L. asiaticus-all strains peptides
Ca. L. africanus PTSAPSY peptides
Ca. L. americanus Sao Paulo peptides
Ca. L. solanacearum CLso-ZC1 peptides
Liberibacter-all strains peptides
L. crescens BT-0 peptides
L. crescens BT-1 peptides
L. crescens-all strains peptides
Atalantia buxifolia v1.0 genome (HZAU) peptides
Advanced Options
General parameters
Max target sequences:
10
50
100
250
500
1000
5000
10000
20000
e-value(Expect threshold)
Word size:
3
6
Max matches in a query range
Scoring parameters
Matrix
PAM30
PAM70
PAM250
BLOSUM80
BLOSUM62
BLOSUM45
BLOSUM50
BLOSUM90
BLAST