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Atalantia buxifolia
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Ca. Liberibacter asiaticus
Ca. Liberibacter africanus
Ca. Liberibacter americanus
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Nucleotide to Nucleotide BLAST (blastn)
Request a New BLAST
Enter
Nucleotide
Query Sequence
Enter one or more queries in the top text box or use the browse button to upload a file from your local disk. The file may contain a single sequence or a list of sequences. In both cases, the data must be in
FASTA format
.
Show an Example Sequence
Enter FASTA sequence(s)
Or upload your own query FASTA:
Upload
The file should be a plain-text FASTA (.fasta, .fna, .fa, .fas) file. In other words, it cannot have formatting as is the case with MS Word (.doc, .docx) or Rich Text Format (.rtf). It cannot be greater than
2048MB
in size.
Don't forget to press the Upload button before attempting to submit your BLAST.
Choose Search Target
Choose from one of the
nucleotide
BLAST databases listed below.
Nucleotide
BLAST Databases:
SELECT a Dataset
Atalantia buxifolia cv. HKC_v2.0 genome
Atalantia buxifolia cv. HKC_v2.0 genome transcripts
Atalantia buxifolia v1.0 genome (HZAU) CDS
Atalantia buxifolia v1.0 genome (HZAU) scaffolds
Atalantia buxifolia v1.0 genome (HZAU) transcripts
C. changshanensis cv. Huyou v1.0 genome
C. changshanensis cv. Huyou v1.0 genome transcripts
Citropsis gilletiana cv. CGI v1.0 genome
Citropsis gilletiana cv. CGI v1.0 genome transcripts
C. aurantifolia transcriptome
C. australasica cv. Rainbow v1.0 genome
C. australasica cv. Rainbow v1.0 genome transcripts
Citrus australasica CRC3672 v1.0 genome
Citrus australasica CRC3672 v1.0 transcripts
Citrus australasica cv. AZM v1.0 genome
Citrus australasica cv. AZM v1.0 genome transcripts
C. australis v1.0 genome, CDS
C. australis v1.0 genome, scaffolds
C. clementina NCBI ESTs
C. clementina unigene v1.0 contigs
C. clementina v0.9 genome (JGI) CDS
C. clementina v0.9 genome (JGI) scaffolds
C. clementina v0.9 genome (JGI) transcripts
C. clementina v1.0 genome (JGI) CDS
C. clementina v1.0 genome (JGI) scaffolds
C. clementina v1.0 genome (JGI) transcripts
Citrus garrawayi UQ v1.0 genome
Citrus garrawayi UQ v1.0 genome transcripts
Citrus glauca CRC3463 v1.0 genome
Citrus glauca CRC3463 v1.0 transcripts
Citrus glauca UQ v1.0 genome
Citrus glauca UQ v1.0 genome transcripts
Citrus hongheensis cv. HH v1.0 genome
Citrus hongheensis cv. HH v1.0 genome transcripts
C. ichangensis XJC v1.0 genome CDS
C. ichangensis XJC v1.0 genome scaffolds
C. ichangensis XJC v1.0 genome transcripts
Citrus ichangensis cv. ZGYCC v2.0 genome
Citrus ichangensis cv. ZGYCC v2.0 genome transcripts
Citrus inodora CRC3784 v1.0 genome
Citrus inodora CRC3784 v1.0 transcripts
Citrus inodora v1.0 (UQ) genome
Citrus inodora v1.0 (UQ) genome transcripts
Clausena lansium cv. HP v1.0 genome
Clausena lansium cv. HP v1.0 genome transcripts
C. limon Eureka v1.0 genome
C. limon Eureka v1.0 genome transcripts
C. limon v1.0 genome, alternative scaffolds
C. limon v1.0 genome, alternative transcripts
C. limon v1.0 genome, primary scaffolds
C. limon v1.0 genome, primary transcripts
Citrus linwuensis cv. LW v1.0 genome
Citrus linwuensis cv. LW v1.0 genome transcripts
Citrus mangshanensis cv. MSYG v1.0 genome
Citrus mangshanensis cv. MSYG v1.0 genome transcripts
C. maxima Wanbaiyou v1.0 genome CDS
C. maxima Wanbaiyou v1.0 genome scaffolds
C. maxima Wanbaiyou v1.0 genome transcripts
Citrus maxima Cupi Majiayou v1.0 genome
Citrus maxima Cupi Majiayou v1.0 transcripts
Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 genome
Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 genome transcripts
Citrus maxima cv. XGF v1.0 genome
Citrus maxima cv. XGF v1.0 genome transcripts
C. medica XZ v1.0 genome CDS
C. medica XZ v1.0 genome scaffolds
C. medica XZ v1.0 genome transcripts
C. reticulata 'Chachi' cv. Dazhongyoushen genome transcripts
C. reticulata 'Chachi' cv. Dazhongyoushen v1.0 genome
C. reticulata NCBI ESTs
C. reticulata WM01 v1.0 genome CDS
C. reticulata WM01 v1.0 genome scaffolds
C. reticulata WM01 v1.0 genome transcripts
C. sinensis CGD RefTrans v1
C. sinensis DHSO v3.0 genome CDS
C. sinensis DHSO v3.0 genome scaffolds
C. sinensis DHSO v3.0 genome transcripts
C. sinensis NCBI ESTs
C. sinensis Valencia DVS_A v1.0 genome scaffolds
C. sinensis Valencia DVS_A v1.0 genome transcripts
C. sinensis Valencia DVS_B v1.0 genome scaffolds
C. sinensis Valencia DVS_B v1.0 genome transcripts
C. sinensis Valencia v1.0 genome CDS
C. sinensis Valencia v1.0 genome scaffolds
C. sinensis Valencia v1.0 genome transcripts
C. sinensis Valencia v2.0 genome CDS
C. sinensis Valencia v2.0 genome scaffolds
C. sinensis Valencia v2.0 genome transcripts
C. sinensis cv. Jinhong v1.0 genome
C. sinensis cv. Jinhong v1.0 genome transcripts
C. sinensis cv. Neixiu v1.0 genome
C. sinensis cv. Neixiu v1.0 genome transcripts
C. sinensis unigene v1.0 contigs
C. sinensis v1.0 genome (JGI) CDS
C. sinensis v1.0 genome (JGI) scaffolds
C. sinensis v1.0 genome (JGI) transcripts
C. sinensis v1.1 genome (JGI) CDS
C. sinensis v1.1 genome (JGI) scaffolds
C. sinensis v1.1 genome (JGI) transcripts
Citrus sinensis cv. Gannanzao v1.0 genome
Citrus sinensis cv. Gannanzao v1.0 genome transcripts
Citrus sinensis cv. Newhall v1.0 genome
Citrus sinensis cv. Newhall v1.0 transcripts
Fortunella hindsii S3y-45 v1.0 genome CDS
Fortunella hindsii S3y-45 v1.0 genome scaffolds
Fortunella hindsii S3y-45 v1.0 genome transcripts
Fortunella hindsii S3y-45 v2.0 genome
Fortunella hindsii S3y-45 v2.0 transcripts
Luvunga scandens cv. SYT v1.0 genome
Luvunga scandens cv. SYT v1.0 genome transcripts
Poncirus trifoliata DPI 50-7 v1.3.1 genome CDS
Poncirus trifoliata DPI 50-7 v1.3.1 genome scaffolds
Poncirus trifoliata DPI 50-7v v1.3.1 genome transcripts
Poncirus trifoliata ZK8 v1.0 genome CDS
Poncirus trifoliata ZK8 v1.0 genome scaffolds
Poncirus trifoliata ZK8 v1.0 genome transcripts
Murraya paniculata cv. JLX v1.0 genome
Murraya paniculata cv. JLX v1.0 genome transcripts
Murraya paniculata cv. Kunming v1.0 genome
Murraya paniculata cv. Kunming v1.0 genome transcripts
P. trifoliata unigene v1.0 contigs
C. trifoliata NCBI ESTs
Ca. L. asiaticus A4 CDS
Ca. L. asiaticus A4 genome
Ca. L. asiaticus Ishi-1 CDS
Ca. L. asiaticus Ishi-1 genome
Ca. L. asiaticus JXGC CDS
Ca. L. asiaticus JXGC genome
Ca. L. asiaticus gxpsy CDS
Ca. L. asiaticus gxpsy genome
Ca. L. asiaticus psy62 CDS
Ca. L. asiaticus psy62 genome
Ca. L. asiaticus-all strains CDS
Ca. L. africanus PTSAPSY CDS
Ca. L. africanus PTSAPSY genome
Ca. L. americanus Sao Paulo CDS
Ca. L. americanus Sao Paulo genome
Ca. L. solanacearum CLso-ZC1 CDS
Ca. L. solanacearum CLso-ZC1 genome
Liberibacter-all strains 16S rRNA
Liberibacter-all strains CDS
L. crescens BT-0 CDS
L. crescens BT-0 genome
L. crescens BT-1 CDS
L. crescens BT-1 genome
L. crescens-all strains CDS
Aegle marmelos cv. AEG v1.0 genome
Aegle marmelos cv. AEG v1.0 genome transcripts
C. aurantiifolia long read transcriptome
Advanced Options
General parameters
Max target sequences:
10
50
100
250
500
1000
5000
10000
20000
e-Value (Expected Threshold)
Expected number of chance matches in a random model. This number should be give in a decimal format.
More Information
|
Expect value video tutorial
Word size:
7
11
15
16
20
24
28
32
48
64
128
256
Max matches in a query range
Scoring parameters
Match/Mismatch Scores:
1,-2
1,-3
1,-4
2,-3
4,-5
1,-1
Gap Costs:
Existence: 5 Extension: 2
Existence: 2 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 3 Extension: 1
Existence: 2 Extension: 1
Existence: 1 Extension: 1
BLAST