DY270325

Overview
NameDY270325
Unique NameDY270325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_BOVIN (60S ribosomal protein L37 OS=Bos taurus GN=RPL37 PE=3 SV=4)

HSP 1 Score: 124.405 bits (311), Expect = 1.413e-27
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            M KGT SFGKRRNKT  LC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_ICTPU (60S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 1.845e-27
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            M KGT SFGKRRNKT  LC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+++ V RRF++GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREGT 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_EMENI (60S ribosomal protein L37 OS=Emericella nidulans GN=rpl37 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.562e-26
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            M KGT SFGKR NKT  LC RCGRRS+H+QKS CA C YPAA+ R YNWS KA RRKTTG+GR  +LR V RRFK+GF+ GT
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSGRTAHLRDVHRRFKNGFQVGT 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_DEBHA (60S ribosomal protein L37 OS=Debaryomyces hansenii GN=RPL37 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.040e-26
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 283
            M KGT S GKR NK+  LC RCG+RSFH+QK  CA+C YPAA+ R++NW+ KA RR+TTGTGRM YL+HV RRFK+GF+ G
Sbjct:    1 MSKGTPSLGKRHNKSHVLCNRCGKRSFHVQKKTCASCGYPAAKLRSHNWATKAKRRRTTGTGRMAYLKHVSRRFKNGFQTG 81          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37B_SCHPO (60S ribosomal protein L37-B OS=Schizosaccharomyces pombe GN=rpl37b PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 1.322e-25
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 283
            M KGT SFG R NK+  +C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+TTGTGRM YL+ V R FK+GFR G
Sbjct:    1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSG 81          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_CANAL (60S ribosomal protein L37 (Fragment) OS=Candida albicans GN=RPL37 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.727e-25
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 2
Query:   47 KGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 283
            +GT S GKR NK+  LC RCGRRSFH+QK  C++C YPAA+ R++NW++KA RR+TTGTGRM YL+HV RRFK+GF+ G
Sbjct:    1 EGTPSLGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTGRMAYLKHVTRRFKNGFQTG 79          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37A_SCHPO (60S ribosomal protein L37-A OS=Schizosaccharomyces pombe GN=rpl37a PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.727e-25
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 283
            M KGT SFG R NK+  +C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+TTGTGRM YL+ V R FK+GFR G
Sbjct:    1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_DICDI (60S ribosomal protein L37 OS=Dictyostelium discoideum GN=rpl37 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.572e-25
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            M KGT SFG+R  K+  LC RCG+ SFH+QK  CA+C YP+A+ R+YNWS+KA RRKTTGTGR RYL+ V +RF SGF+E +
Sbjct:    1 MTKGTFSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTGRTRYLKTVHKRFNSGFKEAS 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_SCHMA (60S ribosomal protein L37 OS=Schistosoma mansoni GN=RPL37 PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.120e-24
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 283
            M KGT SFGKR NK+   C RCGR+S+H+QK  C++C YP+AR R YNWS KA RR+TTGTGRM +L+ V RRFK GFR G
Sbjct:    1 MTKGTTSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRMLHLKRVHRRFKQGFRSG 81          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL372_DROME (Probable 60S ribosomal protein L37-B OS=Drosophila melanogaster GN=RpL37b PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.494e-24
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 283
            M KGT SFGKR NKT  +C RCG  S+HLQKS+C+ C YPAA+ R++NWS KA  RK  GTGRMRYL+++ RRF++G REG
Sbjct:    1 MTKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG 81          
The following BLAST results are available for this feature:
BLAST of DY270325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL37_BOVIN1.413e-2770.7360S ribosomal protein L37 OS=Bos taurus GN=RPL37 P... [more]
RL37_ICTPU1.845e-2769.5160S ribosomal protein L37 OS=Ictalurus punctatus G... [more]
RL37_EMENI1.562e-2669.5160S ribosomal protein L37 OS=Emericella nidulans G... [more]
RL37_DEBHA2.040e-2665.4360S ribosomal protein L37 OS=Debaryomyces hansenii... [more]
RL37B_SCHPO1.322e-2565.4360S ribosomal protein L37-B OS=Schizosaccharomyces... [more]
RL37_CANAL1.727e-2564.5660S ribosomal protein L37 (Fragment) OS=Candida al... [more]
RL37A_SCHPO1.727e-2565.4360S ribosomal protein L37-A OS=Schizosaccharomyces... [more]
RL37_DICDI8.572e-2562.2060S ribosomal protein L37 OS=Dictyostelium discoid... [more]
RL37_SCHMA1.120e-2464.2060S ribosomal protein L37 OS=Schistosoma mansoni G... [more]
RL372_DROME2.494e-2462.96Probable 60S ribosomal protein L37-B OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YE10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270325 ID=DY270325; Name=DY270325; organism=Citrus clementina; type=EST; length=1261bp
CACTCATCAGACCGCTTTCCTCTACTTCGCATACGCTTCAATGGGTAAGG
GCACAGGGAGTTTTGGTAAGAGGAGAAACAAGACGCTTTTTTTGTGTGTG
CGATGTGGCCGTCGCAGCTTCCATCTTCAGAAGAGTCGTTGCGCTGCTTG
TGCTTACCCCGCTGCTCGCAAGAGAACGTATAACTGGAGTGTGAAGGCAA
TCCGAAGAAAGACCACTGGAACCGGCAGGATGAGGTATCTGCGCCATGTC
CCTCGCAGGTTCAAGAGCGGCTTCAGAGAAGGTACTCAGGCAGCACCAAG
GAAGAAGGGAGCATCTGCCTCTGCTTAAGGAGTTGAAGGGTAATTTTGGG
CGTGAATCAGCATCTCATTATAGATTCAGTCTTCTTTAATGGGTGGAGAC
CAGATTCATGGGAACGTAATTCTTTAAATAGGATGTTATTTATTTTTGTG
CTTAATTGTTTTCTATGTTTGTTTACATGCATCCCTATTCCCACTGAGAA
GACACGTCCAGCTTCTTACCGTCGGTAGTACCCCCCACAGAACCTCAAAT
TCCACCCAAAATCCCCGAATTACTAAAACATTCCTTCCCTCGTGAGATCT
CCTTTCAATATGACCACCACCAAGCCGTATGACTTAACTACCGAGAACTA
CCTATAAACAGTATAAGAAATTTCGCAAAGACAGAAAGACCCTACTGGCG
CCCAACCTCCGTCCCCCAATCCAGTCACTCGAGTCGCCCGGATATCCAAT
ATCATAGACGTGGCTTACTTTCTACAAATGAGCTTGATACATACCGATGG
ACGCCAGTACAACAAAGCCACGTCCGCCCTCCCTACACCCTCCGAACATA
GTCTTTTATACCTCTAACATACCCCTCCCCCCCAATTCAATATCTCTTTT
ATCCTTATATAACATAAATATATTTAATATTTAAAAAATCGTCGAGAGAT
CATAATAATCCAAGTGACACCACAACACACTCCACTCGAGCAGTTCTCAG
GTTAGTTCGACTTATTGGAGTCTCAGAATTAGATTAACGACCTCCAGACT
TACGCGCACTACCCTCTGCTGACACTCCAAACTTATCACCATAAGGTAAA
TCTACTGAACAAGGCATGATGTCAGTGCGCAATTTTGACCTGAGTATATA
GGACGTGTAGTGATCAGTGGAGGTAGGAGTAGGACCAGACATAACAGACC
TCTAAGCGAAGCAAGGCATGTAGACAATTCACATCGAGAGTACAAGCTGA
TAGCTATTGGG
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