DY270325

Overview
NameDY270325
Unique NameDY270325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_CAEEL (60S ribosomal protein L37 OS=Caenorhabditis elegans GN=rpl-37 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.111e-23
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 286
            M KGT +FGK+  K+  LC RCG+ SFH+QK RCA+C Y  A+KRTYNW  K+IRR+TTGTGR R+LR V  RF++GFR  T
Sbjct:    1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTT 82          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_LEIIN (60S ribosomal protein L37 OS=Leishmania infantum GN=RPL37 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.513e-21
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 277
            M KGT S G+R  +T  LC RCGR S+H+Q  RCAACAYP A +R YNWSVKAI+R+ TGTGR RYL+ V RR  + F+
Sbjct:    1 MTKGTTSMGQRHGRTHILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_LEIDO (60S ribosomal protein L37 OS=Leishmania donovani GN=RPL37 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.513e-21
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 277
            M KGT S G+R  +T  LC RCGR S+H+Q  RCAACAYP A +R YNWSVKAI+R+ TGTGR RYL+ V RR  + F+
Sbjct:    1 MTKGTTSMGQRHGRTHILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_SOLLC (60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum GN=RPL37 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.416e-19
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 2
Query:  137 RCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 289
            RC+ACAYPAAR R YNWSVKA+RRKTTGTGRMRYLR+VPRRFK+ FREGT+
Sbjct:    2 RCSACAYPAARLRKYNWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTE 52          
BLAST of DY270325 vs. ExPASy Swiss-Prot
Match: RL37_ENCCU (60S ribosomal protein L37 OS=Encephalitozoon cuniculi GN=RPL37 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.714e-15
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 2
Query:   41 MGKGTGSFGKRRNKTLFLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFR 277
            M KGT SFGK+  +   +C RCGR+S+H QK+ C++C YP  + R    S+KA RR+T GTGRMRY++   R  K+G +
Sbjct:    1 MSKGTASFGKKNKRNTEMCRRCGRQSYHKQKNSCSSCGYPNPKMRNPG-SIKARRRRTIGTGRMRYMKRELRAAKNGHK 78          
The following BLAST results are available for this feature:
BLAST of DY270325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL37_CAEEL2.111e-2360.9860S ribosomal protein L37 OS=Caenorhabditis elegan... [more]
RL37_LEIIN1.513e-2160.7660S ribosomal protein L37 OS=Leishmania infantum G... [more]
RL37_LEIDO1.513e-2160.7660S ribosomal protein L37 OS=Leishmania donovani G... [more]
RL37_SOLLC2.416e-1984.3160S ribosomal protein L37 (Fragment) OS=Solanum ly... [more]
RL37_ENCCU4.714e-1548.1060S ribosomal protein L37 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YE10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270325 ID=DY270325; Name=DY270325; organism=Citrus clementina; type=EST; length=1261bp
CACTCATCAGACCGCTTTCCTCTACTTCGCATACGCTTCAATGGGTAAGG
GCACAGGGAGTTTTGGTAAGAGGAGAAACAAGACGCTTTTTTTGTGTGTG
CGATGTGGCCGTCGCAGCTTCCATCTTCAGAAGAGTCGTTGCGCTGCTTG
TGCTTACCCCGCTGCTCGCAAGAGAACGTATAACTGGAGTGTGAAGGCAA
TCCGAAGAAAGACCACTGGAACCGGCAGGATGAGGTATCTGCGCCATGTC
CCTCGCAGGTTCAAGAGCGGCTTCAGAGAAGGTACTCAGGCAGCACCAAG
GAAGAAGGGAGCATCTGCCTCTGCTTAAGGAGTTGAAGGGTAATTTTGGG
CGTGAATCAGCATCTCATTATAGATTCAGTCTTCTTTAATGGGTGGAGAC
CAGATTCATGGGAACGTAATTCTTTAAATAGGATGTTATTTATTTTTGTG
CTTAATTGTTTTCTATGTTTGTTTACATGCATCCCTATTCCCACTGAGAA
GACACGTCCAGCTTCTTACCGTCGGTAGTACCCCCCACAGAACCTCAAAT
TCCACCCAAAATCCCCGAATTACTAAAACATTCCTTCCCTCGTGAGATCT
CCTTTCAATATGACCACCACCAAGCCGTATGACTTAACTACCGAGAACTA
CCTATAAACAGTATAAGAAATTTCGCAAAGACAGAAAGACCCTACTGGCG
CCCAACCTCCGTCCCCCAATCCAGTCACTCGAGTCGCCCGGATATCCAAT
ATCATAGACGTGGCTTACTTTCTACAAATGAGCTTGATACATACCGATGG
ACGCCAGTACAACAAAGCCACGTCCGCCCTCCCTACACCCTCCGAACATA
GTCTTTTATACCTCTAACATACCCCTCCCCCCCAATTCAATATCTCTTTT
ATCCTTATATAACATAAATATATTTAATATTTAAAAAATCGTCGAGAGAT
CATAATAATCCAAGTGACACCACAACACACTCCACTCGAGCAGTTCTCAG
GTTAGTTCGACTTATTGGAGTCTCAGAATTAGATTAACGACCTCCAGACT
TACGCGCACTACCCTCTGCTGACACTCCAAACTTATCACCATAAGGTAAA
TCTACTGAACAAGGCATGATGTCAGTGCGCAATTTTGACCTGAGTATATA
GGACGTGTAGTGATCAGTGGAGGTAGGAGTAGGACCAGACATAACAGACC
TCTAAGCGAAGCAAGGCATGTAGACAATTCACATCGAGAGTACAAGCTGA
TAGCTATTGGG
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