DY270350

Overview
NameDY270350
Unique NameDY270350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15245 contig Ccv1_Contig15245:42..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.936e-25
Identity = 62/161 (38.51%), Postives = 96/161 (59.63%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.009e-25
Identity = 62/161 (38.51%), Postives = 96/161 (59.63%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.543e-25
Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  LR IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.116e-24
Identity = 59/161 (36.65%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R F+ +G+    ++E L +EL   GY G++++ TP+ T+++I   R   V+G  GR+IRELT ++++RF      +E+  E++ N    A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.116e-24
Identity = 62/161 (38.51%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++ I A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.611e-23
Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.748e-23
Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.327e-22
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +RKFV DG   A ++E    +L   GY G+E+  TP+ T+I+I + +   V+G+ G+ IR+LT  V  R+      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV+E +
Sbjct:    4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.183e-22
Identity = 58/161 (36.02%), Postives = 92/161 (57.14%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            ++KFV DG   A ++E    +L+  GY G+E+  TP+ T+I+I + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.769e-22
Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQP 506
            ++KFVADGV    + + L +EL   GY G+++  TPV T++ I A +   V+G+ G+ +R+LT+ +   +      VE+  ++V N  L A   AE L   L  G   R+A   V+R +M+SGA GCEVI++GKL   RA+  KF +GY+  SG+P
Sbjct:    4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEP 157          
The following BLAST results are available for this feature:
BLAST of DY270350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_THEON2.936e-2538.5130S ribosomal protein S3P OS=Thermococcus onnurine... [more]
RS3_THEGJ5.009e-2538.5130S ribosomal protein S3P OS=Thermococcus gammatol... [more]
RS3_PYRFU8.543e-2539.1330S ribosomal protein S3P OS=Pyrococcus furiosus G... [more]
RS3_THESM1.116e-2436.6530S ribosomal protein S3P OS=Thermococcus sibiricu... [more]
RS3_PYRKO1.116e-2438.5130S ribosomal protein S3P OS=Pyrococcus kodakaraen... [more]
RS3_PYRAB1.611e-2336.0230S ribosomal protein S3P OS=Pyrococcus abyssi GN=... [more]
RS3_PYRHO2.748e-2336.0230S ribosomal protein S3P OS=Pyrococcus horikoshii... [more]
RS3_METBF2.327e-2237.2730S ribosomal protein S3P OS=Methanosarcina barker... [more]
RS3_METAC5.183e-2236.0230S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_METLZ6.769e-2239.1030S ribosomal protein S3P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YF16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270350 ID=DY270350; Name=DY270350; organism=Citrus clementina; type=EST; length=1259bp
GTTGGATTCTGACTTACATGGCTACTCAGATTAGCAAGAAGCGGAAATTT
GTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAGA
GCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTGC
GCACTGAGATCATCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGAG
AAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCAA
GTTTCCAGAGAATAGTGTGGAGCTATATGCTGAGAAAGTTAACAATAGGG
GTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCGATACAAGCTTCTTGGA
GGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCTGAGATTTATCATGGA
GAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGGCTC
AACGTGCGAAGTCCATGAAATTTAAAGATGGGTACATGATATCCTCAGGT
CAACCTGTGAATGAATACATCCCACTCAGCTGTAAGACATGTTCTTCTTA
GACAGGGTGTGCTTGGTATCCAGGTGAACATCCTGCTTGGATGGGATCAA
AAAGGGCAAGCCAGGGCCAACCACACCCTTTGCCTGATCTGGGTTACCAT
CCATCCTCCTGAAGGAAAAAGTGTAGTTGTCCCCACCACCGGCAACCCAT
ATTGTACTTTTCAGTCACAAATCCCGGCGGCCGGATTGCGCTCCCCGCCC
CACCCCTCCCCGCCACCCAACAGATCATAATCCTTCGCTCCCTCCTTTTT
TTTTACCCACGGCAGCATCCCCTATACCCCATTTGGGTCTCTGCTGTGAG
GATCTCCATGCTGCCCTGTCGGGCTTATCCCGATCAAACGCTTCAGAAGC
ACGCTGCCAAAAACCCACCCCAACCATGCAGGATAAACGGACGCACTCCA
TCGTTTCATACCTTACATTTTATAAAAAATGAATACCCTCAGACAAACAC
TGACCCGCGCAATGCGCATGCCGACAAACAACTCTACCAGGCCGAGATCG
TACTTCCCGTCCCAGGGACACATCCTTCCTCCTCTAACCTAACACCCCAC
CCCTCGCCCTCCCGAATGATCACCTCACCCCCAGACCGAGACCTCAAAAT
AACTAACTGTAGTTCCGTATCCAGACTATCCAATAAAAAGTATAATGCTA
CACAATAAAAAAATCAGAACCCAACATAACGCATCCCAAATCTTAACCAT
TGTCACGCA
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