DY270350

Overview
NameDY270350
Unique NameDY270350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.841e-22
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R FV + V    ++E   +EL++ GYS  ++R TP+ T+III A +   V+G +G RIRELT  + K F   +  +++  + V N  L A   A+ +   L  GL  RR  +  +R +M +GAKG  VI+SGKL  +RA++ KF  GYM   G+P  E +
Sbjct:    3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELV 161          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.508e-21
Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQP 506
            ++KF+ DGV    + + LT+EL   GY G+++  TP+ T++ I A +   V+G+ G+++R+LT  +   +      VE+  ++V N    A   AE L   L  G   R+A    +R IMESGA GCEVIV+GKL   R+++ KF +GY+   G+P
Sbjct:    4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEP 157          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.970e-21
Identity = 58/161 (36.02%), Postives = 91/161 (56.52%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            ++KFV DG   A ++E    +L   GY G+E+  TP+ T+III + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIRKLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.360e-21
Identity = 62/161 (38.51%), Postives = 90/161 (55.90%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +RKFVADGV    +   L  EL   GY G+++  TP+ T++ I A +   V+G+ G+ +R LT  +   +      +E+  ++V+N  L A   AE L   L  G   R+A    LR IM+SGA GCEV++SGKL   R +  KF +GY+  SG PVN  +
Sbjct:    4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVRTLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.388e-21
Identity = 54/161 (33.54%), Postives = 94/161 (58.39%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +RKF+A+G   A + + LT+EL   G+ G+++  TP+ T++ I A +   V+G+ G+ + +LT  + + +      +E+  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  +
Sbjct:    4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.667e-20
Identity = 57/161 (35.40%), Postives = 93/161 (57.76%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            ++KFV +G   A ++E L +EL   GY G+ +  TP+ T+I + A +   V+G+ G+ IR+LT  +++RF+     +++  + V    L A   A  L   L  G   R+A   +LR +M+SGA GCE+++SGKL   R++  KF  GY+  SG+P  E +
Sbjct:    4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIRKLTRDLERRFRLDNPQIDV--QDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.851e-20
Identity = 53/161 (32.92%), Postives = 92/161 (57.14%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            ++ FV +G+    ++E L +EL   GY G++V+VTP+ T +++ A R   V+G  G+ +R +T  ++ +F      VE+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+ + KF DGY+   G+P  +++
Sbjct:    3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHV 161          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 4.851e-20
Identity = 52/164 (31.71%), Postives = 98/164 (59.76%), Query Frame = 3
Query:   30 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            ++ +++F+ DG+   +++E    EL   GY G++V  TP+ T+I+++A +   V+G+ G+ IR++T+ ++ RF   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R++  KF  GY+  +G+P  E +
Sbjct:    1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.275e-20
Identity = 51/161 (31.68%), Postives = 93/161 (57.76%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            ++KFV DG   A ++E   ++L+  GY G+++  TP+ T+I + A +   V+G+ G+ IR+LT  V + +      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +
Sbjct:    4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.081e-19
Identity = 52/161 (32.30%), Postives = 90/161 (55.90%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            ++ FV +G+    ++E L  +L   GY G++++VTPV T +I+ A +   V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P  +Y+
Sbjct:    3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYV 161          
The following BLAST results are available for this feature:
BLAST of DY270350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_METJA8.841e-2237.8930S ribosomal protein S3P OS=Methanocaldococcus ja... [more]
RS3_METMJ1.508e-2137.1830S ribosomal protein S3P OS=Methanoculleus marisn... [more]
RS3_METMA1.970e-2136.0230S ribosomal protein S3P OS=Methanosarcina mazei ... [more]
RS3_METHJ3.360e-2138.5130S ribosomal protein S3P OS=Methanospirillum hung... [more]
RS3_METB64.388e-2133.5430S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_METTP1.667e-2035.4030S ribosomal protein S3P OS=Methanosaeta thermoph... [more]
RS3_METTH4.851e-2032.9230S ribosomal protein S3P OS=Methanobacterium ther... [more]
RS3_HALMA4.851e-2031.7130S ribosomal protein S3P OS=Haloarcula marismortu... [more]
RS3_METBU8.275e-2031.6830S ribosomal protein S3P OS=Methanococcoides burt... [more]
RS3_METST1.081e-1932.3030S ribosomal protein S3P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YF16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270350 ID=DY270350; Name=DY270350; organism=Citrus clementina; type=EST; length=1259bp
GTTGGATTCTGACTTACATGGCTACTCAGATTAGCAAGAAGCGGAAATTT
GTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAGA
GCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTGC
GCACTGAGATCATCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGAG
AAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCAA
GTTTCCAGAGAATAGTGTGGAGCTATATGCTGAGAAAGTTAACAATAGGG
GTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCGATACAAGCTTCTTGGA
GGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCTGAGATTTATCATGGA
GAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGGCTC
AACGTGCGAAGTCCATGAAATTTAAAGATGGGTACATGATATCCTCAGGT
CAACCTGTGAATGAATACATCCCACTCAGCTGTAAGACATGTTCTTCTTA
GACAGGGTGTGCTTGGTATCCAGGTGAACATCCTGCTTGGATGGGATCAA
AAAGGGCAAGCCAGGGCCAACCACACCCTTTGCCTGATCTGGGTTACCAT
CCATCCTCCTGAAGGAAAAAGTGTAGTTGTCCCCACCACCGGCAACCCAT
ATTGTACTTTTCAGTCACAAATCCCGGCGGCCGGATTGCGCTCCCCGCCC
CACCCCTCCCCGCCACCCAACAGATCATAATCCTTCGCTCCCTCCTTTTT
TTTTACCCACGGCAGCATCCCCTATACCCCATTTGGGTCTCTGCTGTGAG
GATCTCCATGCTGCCCTGTCGGGCTTATCCCGATCAAACGCTTCAGAAGC
ACGCTGCCAAAAACCCACCCCAACCATGCAGGATAAACGGACGCACTCCA
TCGTTTCATACCTTACATTTTATAAAAAATGAATACCCTCAGACAAACAC
TGACCCGCGCAATGCGCATGCCGACAAACAACTCTACCAGGCCGAGATCG
TACTTCCCGTCCCAGGGACACATCCTTCCTCCTCTAACCTAACACCCCAC
CCCTCGCCCTCCCGAATGATCACCTCACCCCCAGACCGAGACCTCAAAAT
AACTAACTGTAGTTCCGTATCCAGACTATCCAATAAAAAGTATAATGCTA
CACAATAAAAAAATCAGAACCCAACATAACGCATCCCAAATCTTAACCAT
TGTCACGCA
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