DY270350

Overview
NameDY270350
Unique NameDY270350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15245 contig Ccv1_Contig15245:42..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METMP (30S ribosomal protein S3P OS=Methanococcus maripaludis GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.662e-18
Identity = 50/161 (31.06%), Postives = 84/161 (52.17%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R FV + V    ++E    +L   GYS ++ + TP+ T I + A +   V+G KG+ ++ELT  +   +      +E+  ++V N  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALV 161          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.662e-18
Identity = 49/164 (29.88%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   30 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            ++ + +F+ +G+  ++++E    EL   GY G++V  TP+ T+I+++A +   V+G+ G+ IR++T  ++ RF   +  +++  ++V+   L A   A+ L   L  G   R+A +  +  I+ESGA G E+++SGK+   R++  KF  GY+  +G+P  E +
Sbjct:    1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIV 162          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.477e-18
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R F+A+ V    ++E    +L   GYS +E++ TP+ T I + A +   V+G KG+ ++ELT  + + +K     +E+  + +    L        +   L  G+  R+  +  +R +M +GAKG  +I+SGKL  +R+++ KF DGYM   G+P  E +
Sbjct:    3 ERTFIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELV 161          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.541e-18
Identity = 49/161 (30.43%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALV 161          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.930e-18
Identity = 49/161 (30.43%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALV 161          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.020e-17
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV 509
            K+ F+   +   +++E L  +    GYS VE++ TP+ T +II A R+  ++G +G+ I+++T V+++ F  P   V +   KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR +RA+  K+  G +  SG  V
Sbjct:    9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQV 163          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.196e-17
Identity = 47/161 (29.19%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            KR F+   +   +++E L +     GY+GV++   P+ T +II A R   ++G +G  IR+L ++ +  F    ++ ++   +V N  L A   A  +   L  G   RR    + R ++ +GA G ++++SGKLR +RA+  K + G + ++G  V EY+
Sbjct:    5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIRQLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQV-EYM 162          

HSP 2 Score: 26.1794 bits (56), Expect = 8.196e-17
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  529 AVRHVLLRQGVLGIQVNIL 585
            AV HV L+ GVLGI+V I+
Sbjct:  166 AVMHVTLKPGVLGIEVMIV 184          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.491e-16
Identity = 57/168 (33.93%), Postives = 87/168 (51.79%), Query Frame = 3
Query:   18 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            M T++ K   F+  G+   +++E L +   E GYS V+V  T + T I I A R   ++G +G  IR L  V Q  F  P   + +  E+  N  L A  QA  +   +  G+  RR  +  +  IM +GA G E+ +SGKL ++RA+  KFK G +  SG  V+E +
Sbjct:    1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELV 164          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.550e-16
Identity = 52/154 (33.77%), Postives = 85/154 (55.19%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG 500
            K+ F+   +    ++E L ++     Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  ++++ F    ++ ++    V N  L A   A  L   L  G   RRA +  +R IM +GA G EVI+SGKL ++RAK  K K+G +  SG
Sbjct:    5 KKYFLQRSMTKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIKQLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSG 156          
BLAST of DY270350 vs. ExPASy Swiss-Prot
Match: RS3_ARCFU (30S ribosomal protein S3P OS=Archaeoglobus fulgidus GN=rps3p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.249e-16
Identity = 54/161 (33.54%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   39 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 521
            +RKFV + +    + E +  E+   G+ GV++  TP+ T++ +   R   V+G+ GRRI+ LT   +K   F   + ++  ++V      A   A  L   L  G   RRA Y  L  IME+GAKGCE+ +SGKL ++RA++ KF  G ++ +G P    +
Sbjct:    4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMV 161          
The following BLAST results are available for this feature:
BLAST of DY270350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_METMP2.662e-1831.0630S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_HALWD2.662e-1829.8830S ribosomal protein S3P OS=Haloquadratum walsbyi... [more]
RS3_METVS3.477e-1830.4330S ribosomal protein S3P OS=Methanococcus vanniel... [more]
RS3_METM74.541e-1830.4330S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METM65.930e-1830.4330S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_IGNH45.020e-1736.3130S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]
RS3_HYPBU8.196e-1729.1930S ribosomal protein S3P OS=Hyperthermus butylicu... [more]
RS3_AERPE2.491e-1633.9330S ribosomal protein S3P OS=Aeropyrum pernix GN=r... [more]
RS3_SULTO5.550e-1633.7730S ribosomal protein S3P OS=Sulfolobus tokodaii G... [more]
RS3_ARCFU7.249e-1633.5430S ribosomal protein S3P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YF16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270350 ID=DY270350; Name=DY270350; organism=Citrus clementina; type=EST; length=1259bp
GTTGGATTCTGACTTACATGGCTACTCAGATTAGCAAGAAGCGGAAATTT
GTTGCCGACGGTGTCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAGA
GCTTGCGGAAGATGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTGC
GCACTGAGATCATCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGAG
AAGGGAAGAAGGATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCAA
GTTTCCAGAGAATAGTGTGGAGCTATATGCTGAGAAAGTTAACAATAGGG
GTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCGATACAAGCTTCTTGGA
GGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCTGAGATTTATCATGGA
GAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGGCTC
AACGTGCGAAGTCCATGAAATTTAAAGATGGGTACATGATATCCTCAGGT
CAACCTGTGAATGAATACATCCCACTCAGCTGTAAGACATGTTCTTCTTA
GACAGGGTGTGCTTGGTATCCAGGTGAACATCCTGCTTGGATGGGATCAA
AAAGGGCAAGCCAGGGCCAACCACACCCTTTGCCTGATCTGGGTTACCAT
CCATCCTCCTGAAGGAAAAAGTGTAGTTGTCCCCACCACCGGCAACCCAT
ATTGTACTTTTCAGTCACAAATCCCGGCGGCCGGATTGCGCTCCCCGCCC
CACCCCTCCCCGCCACCCAACAGATCATAATCCTTCGCTCCCTCCTTTTT
TTTTACCCACGGCAGCATCCCCTATACCCCATTTGGGTCTCTGCTGTGAG
GATCTCCATGCTGCCCTGTCGGGCTTATCCCGATCAAACGCTTCAGAAGC
ACGCTGCCAAAAACCCACCCCAACCATGCAGGATAAACGGACGCACTCCA
TCGTTTCATACCTTACATTTTATAAAAAATGAATACCCTCAGACAAACAC
TGACCCGCGCAATGCGCATGCCGACAAACAACTCTACCAGGCCGAGATCG
TACTTCCCGTCCCAGGGACACATCCTTCCTCCTCTAACCTAACACCCCAC
CCCTCGCCCTCCCGAATGATCACCTCACCCCCAGACCGAGACCTCAAAAT
AACTAACTGTAGTTCCGTATCCAGACTATCCAATAAAAAGTATAATGCTA
CACAATAAAAAAATCAGAACCCAACATAACGCATCCCAAATCTTAACCAT
TGTCACGCA
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