DY270353

Overview
NameDY270353
Unique NameDY270353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1133
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: KCNH5_HUMAN (Potassium voltage-gated channel subfamily H member 5 OS=Homo sapiens GN=KCNH5 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.226e-11
Identity = 39/180 (21.67%), Postives = 91/180 (50.56%), Query Frame = 3
Query:  132 YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK-AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            Y+S++Y+++T++TT+G+G++     VE +F +  M+    L A + GN+T +  +    T  +   +    +F+   ++P  L ++++ Y+   +  ++ ++  +++   PK +   IC HL      +   F+  S   +  L  + +  +  P + +    E+ D +  +VSG +E+I
Sbjct:  419 YVSSLYFTMTSLTTIGFGNIAPTTDVEKMFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEMLNNVRDFLKLYQVPKGLSERVMDYIVSTWSMSKGIDTEKVLSICPKDMRADICVHLNRKVFNEHPAFRLASDGCLRALAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVI 598          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: KCNH2_CHICK (Potassium voltage-gated channel subfamily H member 2 (Fragment) OS=Gallus gallus GN=KCNH2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.226e-11
Identity = 45/232 (19.40%), Postives = 104/232 (44.83%), Query Frame = 3
Query:   15 LVHCAGCLYYLLAD---RYPHKGETWLGSVNPNFTET----------SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK-AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            + H   C++Y + +    Y      WL ++     +           S+  +Y++A+Y++ +++T+VG+G++      E IF I  ML    + A + GN++ ++      T  +   +     F+  +++P  L++++  Y    +     ++ + +++  P  +   IC HL    ++    F+  SK  +  L  K K  + PP + ++   +    +Y I  G +E++
Sbjct:  263 IAHWLACIWYAIGNVERPYMEHKIGWLDNLGDQIGKRYNDSDLSSGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPDCLQADICLHLNRTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHYGDVLTTLYFISRGSIEIL 494          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.226e-11
Identity = 39/188 (20.74%), Postives = 94/188 (50.00%), Query Frame = 3
Query:  108 TETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRF-KAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            + T+ + ++   ++W +  ++T+G G   +    E++F I   +  L L A LIGNM   +   T R  E R     +  ++    LP  L++++  Y   ++ +   +++  +++ LPK + + I +HL L+ V +V LF ++ + ++  +  ++K         ++ + +  +++  I+ G +E +
Sbjct:  363 SSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESV 550          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: KCNH2_RABIT (Potassium voltage-gated channel subfamily H member 2 OS=Oryctolagus cuniculus GN=KCNH2 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.601e-11
Identity = 44/231 (19.05%), Postives = 106/231 (45.89%), Query Frame = 3
Query:   15 LVHCAGCLYYLLAD-RYPHKGET--WLGSVNPNFTET---------SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK-AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            + H   C++Y + +   PH      WL ++     +          S+  +Y++ +Y++ +++T+VG+G++      E IF I  ML    + A + GN++ ++      T  +   +     F+  +++P  L++++  Y    +     ++ + +++  P+ +   IC HL    ++    F+  +K+ +  L  K K  + PP + ++   +    +Y I  G +E++
Sbjct:  562 IAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQMGKPYNSSGLGGPSIKDKYVTGLYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKDCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEIL 792          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: KCNH2_HUMAN (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.601e-11
Identity = 45/231 (19.48%), Postives = 106/231 (45.89%), Query Frame = 3
Query:   15 LVHCAGCLYYLLAD-RYPHKGET--WLGSVNPNFTET---------SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK-AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            + H   C++Y + +   PH      WL ++     +          S+  +Y++A+Y++ +++T+VG+G++      E IF I  ML    + A + GN++ ++      T  +   +     F+  +++P  L++++  Y    +     ++ + +++  P+ +   IC HL    ++    F+  +K  +  L  K K  + PP + ++   +    +Y I  G +E++
Sbjct:  560 IAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQIGKPYNSSGLGGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEIL 790          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: KCNH2_CANFA (Potassium voltage-gated channel subfamily H member 2 OS=Canis familiaris GN=KCNH2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.601e-11
Identity = 45/231 (19.48%), Postives = 106/231 (45.89%), Query Frame = 3
Query:   15 LVHCAGCLYYLLAD-RYPHKGET--WLGSVNPNFTET---------SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK-AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            + H   C++Y + +   PH      WL ++     +          S+  +Y++A+Y++ +++T+VG+G++      E IF I  ML    + A + GN++ ++      T  +   +     F+  +++P  L++++  Y    +     ++ + +++  P+ +   IC HL    ++    F+  +K  +  L  K K  + PP + ++   +    +Y I  G +E++
Sbjct:  559 IAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQIGKPYNSSGLGGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEIL 789          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.601e-11
Identity = 39/188 (20.74%), Postives = 94/188 (50.00%), Query Frame = 3
Query:  108 TETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRF-KAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            + T+ + ++   ++W +  ++T+G G   +    E++F I   +  L L A LIGNM   +   T R  E R     +  ++    LP  L++++  Y   ++ +   +++  +++ LPK + + I +HL L+ V +V LF ++ + ++  +  ++K         ++ + +  +++  I+ G +E +
Sbjct:  369 SSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESV 556          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: KCNH2_RAT (Potassium voltage-gated channel subfamily H member 2 OS=Rattus norvegicus GN=Kcnh2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.091e-11
Identity = 45/231 (19.48%), Postives = 106/231 (45.89%), Query Frame = 3
Query:   15 LVHCAGCLYYLLAD-RYPHKGET--WLGSVNPNFTET---------SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK-AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            + H   C++Y + +   PH      WL ++     +          S+  +Y++A+Y++ +++T+VG+G++      E IF I  ML    + A + GN++ ++      T  +   +     F+  +++P  L++++  Y    +     ++ + +++  P+ +   IC HL    ++    F+  +K  +  L  K K  + PP + ++   +    +Y I  G +E++
Sbjct:  562 IAHWLACIWYAIGNMEQPHMDSHIGWLHNLGDQIGKPYNSSGLGGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEIL 792          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: KCNH2_MOUSE (Potassium voltage-gated channel subfamily H member 2 OS=Mus musculus GN=Kcnh2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.091e-11
Identity = 45/231 (19.48%), Postives = 106/231 (45.89%), Query Frame = 3
Query:   15 LVHCAGCLYYLLAD-RYPHKGET--WLGSVNPNFTET---------SLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK-AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI 668
            + H   C++Y + +   PH      WL ++     +          S+  +Y++A+Y++ +++T+VG+G++      E IF I  ML    + A + GN++ ++      T  +   +     F+  +++P  L++++  Y    +     ++ + +++  P+ +   IC HL    ++    F+  +K  +  L  K K  + PP + ++   +    +Y I  G +E++
Sbjct:  562 IAHWLACIWYAIGNMEQPHMDSHIGWLHNLGDQIGKPYNSSGLGGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEIL 792          
BLAST of DY270353 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.091e-11
Identity = 44/178 (24.72%), Postives = 84/178 (47.19%), Query Frame = 3
Query:  129 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFK-AESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEV 659
            ++    +W +  ++ +G     +    E+IF I   +  L L A LIGNM   +   T R  E R     A  ++    LP  L+K+I  Y   +++  + + +  L+  LPK + K I +HL L  ++KV  F+ +   ++  L A++K      +  ++ + E  +D+  I+ G +
Sbjct:  345 KFFYCFWWGLRNLSALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNL 522          
The following BLAST results are available for this feature:
BLAST of DY270353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
KCNH5_HUMAN1.226e-1121.67Potassium voltage-gated channel subfamily H member... [more]
KCNH2_CHICK1.226e-1119.40Potassium voltage-gated channel subfamily H member... [more]
CNGC7_ARATH1.226e-1120.74Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
KCNH2_RABIT1.601e-1119.05Potassium voltage-gated channel subfamily H member... [more]
KCNH2_HUMAN1.601e-1119.48Potassium voltage-gated channel subfamily H member... [more]
KCNH2_CANFA1.601e-1119.48Potassium voltage-gated channel subfamily H member... [more]
CNGC8_ARATH1.601e-1120.74Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
KCNH2_RAT2.091e-1119.48Potassium voltage-gated channel subfamily H member... [more]
KCNH2_MOUSE2.091e-1119.48Potassium voltage-gated channel subfamily H member... [more]
CNGC3_ARATH2.091e-1124.72Probable cyclic nucleotide-gated ion channel 3 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270353 ID=DY270353; Name=DY270353; organism=Citrus clementina; type=EST; length=1133bp
TTGTGACATTATTTCTGGTGCATTGTGCTGGCTGCCTCTACTACTTGCTA
GCAGACAGGTATCCTCATAAGGGAGAGACATGGTTAGGATCGGTAAACCC
TAATTTCACAGAGACAAGCCTCTGGATTCGATACATTTCCGCAATGTACT
GGTCCATCACCACCATGACAACAGTTGGTTACGGTGACCTCCATGCTGTG
AACACTGTGGAAATGATCTTCATCATCTTCTACATGCTCTTTAATCTTGG
CCTCACGGCTTACTTGATCGGAAATATGACGAATTTAGTCGTTGAAGGAA
CGCGTCGAACTATGGAATTCAGGAATAGTATTGAAGCAGCATCAAATTTT
GTAGGTAGAAATCGGTTGCCTCCAAGGCTTAAGAAGCAGATTTTGGCTTA
CATGTGTTTAAGATTCAAGGCTGAGAGTTTGAATCAGCATCAGTTGATTG
AACAGCTACCAAAGTCTATTTGCAAAAGCATTTGCCAGCATTTGTTTTTG
CATACTGTGGAGAAAGTCTATCTTTTCAAAGATGTCTCCAAGGAAATAAT
TGTGCTCCTGGTAGCAAAGATGAAAGCAGAGTACATACCACCAAGAGAAG
ATGTGATAATGCAAAATGAAGCACCAGATGATGTTTATATAATTGTATCT
GGAGAAGTTGAGATGATTGATTATGAAATGGAAAAAAGAGATTGCTGTAG
GGACTCTACCGACAGGTGACCTGTTTGAAAAAGTTGGTGCCCTTTGCTGC
AGGCCACAAATATATACATAATAAAACAAAAACCTTTCCCCGTCTCTGAG
GCTTAAAACCAGGGGTTTTATTTGAGCCATGCACAACCAAACAGAAAACA
ATGTTCCCCTTCAAAAAACTTCCTTTTCGCAAATAAGAAAATTTAAAGGA
TTCAATTTTTGGATATTTTAATAATCGGAAAACTTGAAAAAAAAAAGGGG
TACTCAAACATTTCCTCCCAACTTCCCTTTCTGTTTCAAAACCCCTAGGA
AATGCTTCTTTTCAAAATAAGACCATCTTGGGAAAAATGTGCACCCGCCA
ATCTATAACCCCCCAACGAAAAAAACCCCCATTTCTCCCCTATTTCCCCC
AAATTCGGATAGATGATAGTTTTTTTTTTTTAT
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