DY270365

Overview
NameDY270365
Unique NameDY270365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1361
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_ECO24 (Glycogen synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.820e-11
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 3 
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDK-GVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            +HN+AYQG F       + LP      + F + +     G+ I+++KAG+  +D +  VSP YA+E+   +   G+E  L    R+  + G++NG+D + W+P TD  +  +Y   T+ D K   K  LQ  +GL VD  +P
Sbjct:  160 VHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNGQ-ISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED-KAENKRQLQIAMGLKVDDKVP 293
[Close]
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJB (Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.233e-11
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 3 
Query:  129 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL-PVDRNIPCHM 428
            +N+MK GI+ S+ V TVSP++A E+  G D G  L + +   +   +G++NG+D   WNP  D++I V+Y A T ++ K   K+AL+  + L  VD+ I  ++
Sbjct:  205 LNFMKGGIVFSNFVTTVSPNHALEVQFG-DYGYGLGHTLYLHRHKFRGVLNGIDYDIWNPEIDRFIPVRYTAQT-LENKAKNKKALRDRLLLQDVDKPIVAYI 305

HSP 2 Score: 30.4166 bits (67), Expect = 8.233e-11
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  418 PVICFIGRLEEQKGLH 465
            P++ +IGRL+EQKG+H
Sbjct:  300 PIVAYIGRLDEQKGVH 315
The following BLAST results are available for this feature:
BLAST of DY270365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
GLGA_ECO247.820e-1132.39Glycogen synthase OS=Escherichia coli O139:H28 (st... [more]
GLGA1_SYNJB8.233e-1136.89Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270365 ID=DY270365; Name=DY270365; organism=Citrus clementina; type=EST; length=1361bp
GTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGA
CTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGG
ATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAA
TATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAA
CTTGTTTCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAA
AACTGGCATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACC
CCTTGACTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATG
GATGCGAAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCC
TGTCGATAGAAATATTCCCTGTCATATGCTTCATTGGTAGACTTGAAGAG
CAGAAAGGCCTACATACTCTTGCCACTGCCAATCCCCATTATCATCAAAA
AAAAGTTCCCATAATACTACCCTTGCTCCTGGCAAACCAACCAATCGCAG
AACCCCCTAGAACAGTCGGAAGACACTGTACCACCTAGACACCACACAGA
CCTAACCGCGTTCCATAATCCCCACCGCCCATACAAATACATGACACTAC
CGAGTTTACATCTACGTAAGATCACAAACTGACGTTCCCAGTGACATTTT
ACCCCCCTCCCAACCGCACCACCTCCTTCTCCCTCCTCCTCCCTCCAGCC
CGCCGAACAAAAACACCACAAGAAAAACAATCACACCCAACCGAGTCCAC
TCCGCTCCCACCTCACGTACACCTCGCAGAGCACATTCAAACAGTCTCAC
CTATCCGACCTAACCCCTCTAACCCACACTCTACGACCGCCTCTTCCCAT
ACCTCAACACACTACACACCACATGCAGACAACATCTAAACCATATACTC
CCAATACTCGGCCATATAAAAATCTGTCAGACCAACACCACGCCCCCCCC
ATCTACCCCTCCCCCGCCCCACCCTCCCCGCCGACTCCCCTCCCCCTGCC
ATATATCCCCTCTAAAACTTCTAATAATACAACCTACCGTGACCCACTAC
GTCACCCCTACCATTACTGACCCTTTGCCTTCCATATTCATTACAACACT
ACGCCCACTGAACCATTACCCCCGACGCACCTTCCCACACCTCTCCCTTT
TTCACCACACTACATTTTCACCACATATTACCCTACATAATAATCGCACA
GCTCCACTTAACACTAATCCCATTCTTTTTCGCACACTACTCTACTCCCC
CCACAACTACATCAGATTACGCCATCTAACACTTATCAATCCTAAACCAC
TACATCCCACC
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