DY270365

Overview
NameDY270365
Unique NameDY270365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1361
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_STRGC (Glycogen synthase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=glgA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.786e-14
Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 3
Query:    3 IHNIAYQGRFA----FEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK-----INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHN+ +QG+F     +E FG+               GY +   G       +NWMKAGIL +D V TVSP YA E+ + E  G  LD I+R    K  GIVNG+D + +NP TD  +   +D S  +  K   K ALQ  VGLPV  ++P
Sbjct:  162 IHNLEFQGQFPDSMLWELFGV---------------GYERYADGTLRWNDCLNWMKAGILYADRVTTVSPSYAGEIRTPE-FGCNLDQILRMESGKLVGIVNGIDTEIYNPETDPLLAHHFDKSD-LSGKLENKRALQERVGLPVRDDVP 294          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_MYCMO (Glycogen synthase OS=Mycoplasma mobile GN=glgA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.786e-14
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 3
Query:    3 IHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 416
            IHN+ YQG F   +    LN   +  S    I      +     N+MKAGI+ SD+V TVS  Y +E +    +G+ L++++ K  + ++GI+NG+D   +NP  DKYI  KYD S   +AK + K ALQ E+ L  ++ I
Sbjct:  161 IHNLQYQGVFGASNVLKYLNEKERSNSLLSEI------ISNDIFNFMKAGIISSDIVTTVSETYKEE-IKQPMQGMGLESVLNKYNSKLRGIINGLDYDIFNPSIDKYIEAKYDVSNYKEAKLINKIALQKELNLEQNKKI 294          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_NITEC (Glycogen synthase OS=Nitrosomonas eutropha (strain C91) GN=glgA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.557e-14
Identity = 54/141 (38.30%), Postives = 76/141 (53.90%), Query Frame = 3
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            +HN+A+QG F  ++   L LP +   S    + Y        ++++KAGI  SD + TVSP YA+E +  E  G  L  ++ K    I GIVNG+D   WNP TD Y+  KY  S  + AK   K ALQ  +GL  ++ IP
Sbjct:  178 LHNLAFQGNFPSDEVAKLGLPDE-SFSMHGAEFYGN------LSFLKAGIYYSDHISTVSPGYARE-IQQEPLGFGLQGLLAKRSDDITGIVNGIDTAIWNPATDPYLVKKY-TSRNLSAKAANKLALQQTMGLENNQAIP 309          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_BACHK (Glycogen synthase OS=Bacillus thuringiensis subsp. konkukian GN=glgA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 9.869e-14
Identity = 55/142 (38.73%), Postives = 80/142 (56.34%), Query Frame = 3
Query:    3 IHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHN+ +QG F+ E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK   K  GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P
Sbjct:  162 IHNLQFQGVFSPEVMYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYDADSLYE-KNENKRALQRYFGLPEKEDTP 294          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_BACC1 (Glycogen synthase OS=Bacillus cereus (strain ATCC 10987) GN=glgA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.869e-14
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 3
Query:    3 IHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHN+ +QG F  E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK    + GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P
Sbjct:  162 IHNLQFQGVFPPEVMYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNGKLSGIVNGIDTSVYNPETDSYITAQYDADSLYE-KSKNKRALQRYFGLPEKEDTP 294          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_DESDG (Glycogen synthase OS=Desulfovibrio desulfuricans (strain G20) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.203e-13
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 3
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT--GIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL 398
            IHN+A+QGRF+   F    LP Q   S D ++ Y         N +K GI  +D V TVSP YA+E+ + E  G  L+ I+R+    + GI+NG D   W P  D+++   Y     +  K   K AL  E+GL
Sbjct:  169 IHNLAFQGRFSSRLFENCGLPPQ-AWSMDGVEFYGD------FNLLKGGIAYADKVTTVSPSYAREITTPE-FGCGLEGILRRRTHALHGILNGADYDIWKPEDDRFLPCTYSPDR-LAGKQRCKRALLDELGL 293          

HSP 2 Score: 28.1054 bits (61), Expect = 1.203e-13
Identity = 12/34 (35.29%), Postives = 21/34 (61.76%), Query Frame = 1
Query:  418 PVICFIGRLEEQKGLHTLATANPHYHQKKVPIIL 519
            PV+ FIGRL +QKG+  L        +++V +++
Sbjct:  301 PVLGFIGRLRDQKGIDLLIDNIAQLMERQVGVVI 334          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_SULSY (Glycogen synthase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.203e-13
Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = 3
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL 398
            IHN+AYQG F       LNL        + ++ Y+K      +N++K GI+ S  + TVSP YA+E+   E  G  LD ++RK   K  GI+NG+D   WNP TDKYI   Y   T+   K + K+    EVGL
Sbjct:  162 IHNLAYQGIFDKFAIERLNLGWDL-FHMEALEYYDK------VNFLKGGIVFSSAITTVSPTYAKEITFPE-YGYGLDGVLRKYSNKLYGILNGIDYDVWNPETDKYIYENYCVFTI-QKKSINKKLFLKEVGL 286          

HSP 2 Score: 23.483 bits (49), Expect = 1.203e-13
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  400 LSIEIFPVICFIGRLEEQKGL 462
            L  E  P+  FIGRL  QKG+
Sbjct:  286 LKDEAKPLYIFIGRLAHQKGV 306          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_BACCR (Glycogen synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glgA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.289e-13
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 3
Query:    3 IHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHN+ +QG F  E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK   K  GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P
Sbjct:  162 IHNLQFQGVFPPEVIYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYIKAQYDAESLYE-KSENKRALQRYFGLPEKEDTP 294          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_THIDA (Glycogen synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glgA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.562e-13
Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKS--SFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 380
            IHN+AY G F   DF  L LPA + S    +F  G++          +KAGI+ +D V TVSP YA+E+ +    G  LD ++R    K  GI+NG+D   W+P  D ++  +Y A  ++  K   K+AL
Sbjct:  167 IHNLAYGGHFPHGDFLRLQLPAHWWSHEGVEFHGGFSM---------LKAGIVYADAVTTVSPTYAEEICTPAF-GYGLDGLLRSRRHKLHGILNGIDSATWDPADDPHLRARYTAGRILPGKRRDKQAL 286          

HSP 2 Score: 25.0238 bits (53), Expect = 1.562e-13
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  418 PVICFIGRLEEQKGLHTLATANP 486
            P++  +GRL EQKG+  +  A P
Sbjct:  302 PLVGLVGRLVEQKGIDWVLAAMP 324          
BLAST of DY270365 vs. ExPASy Swiss-Prot
Match: GLGA_THISH (Glycogen synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.683e-13
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 3
Query:    3 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 419
            IHN+AYQG F    F  LNLP Q          Y       K++++K GI  +D + TVSP YA+E+++ + +G  LD ++  R   + GI+NG+D +EW+P  D+++  +Y A   +  K   K ALQ    LP    IP
Sbjct:  166 IHNLAYQGLFPRHAFDALNLPPQLWH-------YQGLEFHGKLSFIKGGIGFADHITTVSPSYAREILTPQ-QGFGLDGLLNHRAGVLTGILNGVDYREWDPGKDRHLVARYSADD-LSGKARCKAALQHHFKLPCHSGIP 297          
The following BLAST results are available for this feature:
BLAST of DY270365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
GLGA_STRGC5.786e-1439.33Glycogen synthase OS=Streptococcus gordonii (strai... [more]
GLGA_MYCMO5.786e-1436.88Glycogen synthase OS=Mycoplasma mobile GN=glgA PE=... [more]
GLGA_NITEC7.557e-1438.30Glycogen synthase OS=Nitrosomonas eutropha (strain... [more]
GLGA_BACHK9.869e-1438.73Glycogen synthase OS=Bacillus thuringiensis subsp.... [more]
GLGA_BACC19.869e-1438.03Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA_DESDG1.203e-1336.57Glycogen synthase OS=Desulfovibrio desulfuricans (... [more]
GLGA_SULSY1.203e-1339.55Glycogen synthase OS=Sulfurihydrogenibium sp. (str... [more]
GLGA_BACCR1.289e-1338.73Glycogen synthase OS=Bacillus cereus (strain ATCC ... [more]
GLGA_THIDA1.562e-1336.92Glycogen synthase OS=Thiobacillus denitrificans (s... [more]
GLGA_THISH1.683e-1336.17Glycogen synthase OS=Thioalkalivibrio sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YG08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270365 ID=DY270365; Name=DY270365; organism=Citrus clementina; type=EST; length=1361bp
GTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGA
CTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGG
ATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAA
TATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAA
CTTGTTTCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAA
AACTGGCATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACC
CCTTGACTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATG
GATGCGAAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCC
TGTCGATAGAAATATTCCCTGTCATATGCTTCATTGGTAGACTTGAAGAG
CAGAAAGGCCTACATACTCTTGCCACTGCCAATCCCCATTATCATCAAAA
AAAAGTTCCCATAATACTACCCTTGCTCCTGGCAAACCAACCAATCGCAG
AACCCCCTAGAACAGTCGGAAGACACTGTACCACCTAGACACCACACAGA
CCTAACCGCGTTCCATAATCCCCACCGCCCATACAAATACATGACACTAC
CGAGTTTACATCTACGTAAGATCACAAACTGACGTTCCCAGTGACATTTT
ACCCCCCTCCCAACCGCACCACCTCCTTCTCCCTCCTCCTCCCTCCAGCC
CGCCGAACAAAAACACCACAAGAAAAACAATCACACCCAACCGAGTCCAC
TCCGCTCCCACCTCACGTACACCTCGCAGAGCACATTCAAACAGTCTCAC
CTATCCGACCTAACCCCTCTAACCCACACTCTACGACCGCCTCTTCCCAT
ACCTCAACACACTACACACCACATGCAGACAACATCTAAACCATATACTC
CCAATACTCGGCCATATAAAAATCTGTCAGACCAACACCACGCCCCCCCC
ATCTACCCCTCCCCCGCCCCACCCTCCCCGCCGACTCCCCTCCCCCTGCC
ATATATCCCCTCTAAAACTTCTAATAATACAACCTACCGTGACCCACTAC
GTCACCCCTACCATTACTGACCCTTTGCCTTCCATATTCATTACAACACT
ACGCCCACTGAACCATTACCCCCGACGCACCTTCCCACACCTCTCCCTTT
TTCACCACACTACATTTTCACCACATATTACCCTACATAATAATCGCACA
GCTCCACTTAACACTAATCCCATTCTTTTTCGCACACTACTCTACTCCCC
CCACAACTACATCAGATTACGCCATCTAACACTTATCAATCCTAAACCAC
TACATCCCACC
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